RNA id: XM_026925133.2


Basic Information

Item Value
RNA id XM_026925133.2
length 4058
RNA type mRNA
GC content 0.47
exon number 8
gene id prickle2a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21276687 ~ 21314172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATGCTTGCTTCACATGCAACGTTcgtacaaaaacacacagacacacacacacacactcgttctcTCCACAGTCAGACGCAAGCTGAGCTGAGCGAAGCATAACAGAAGAAAAAGCCAGAACTAAAGAAAATCCTCTGCATCTCCCAGGAGGttgagagaagaggaagagttcagccatctctctttttccatctccctctctccaacTCCTCCCTGAATCCTGCCTGAGCCTGACagtcagaaagacagagaaagagtggtgggaaacagaaagagaaaaagaaagagaaaaagaagagTAGGGAGTGGTATGAGGCGGTGATGATGGCTTTGGACATGGAGAGGACGGTGTCTAAGCTCATGTTTGACTTCCAGAGGAACTCCACCTCCGACGACGACTCCGGCTGCGCTCTGGAGGAATACGCTTGGGTGCCCCCAGGCCTCAAACCTGAACAGGTTCACCAGTATTACAGTTTCCTGCCTGAAGATAAGGTCCCCTACGTGAACAGCATCGGCGAGAAGCATCGCATTAAACAGCTCCTACACCAGCTTCCCCCTCATGACAACGAGGTGCGATATTGTAACTCTCTGgatgaagaagagaagagagagctGATGATCTTTAGcaaccagagaaagagagataaccTGGGCAGAGGCACTGTCCGCCCTCTCCCCCTCACCATAACTGGAGCTGTTTGTGAACAATGCGGAGGCCAAATAAATGGAGGTGATATTGCTGTATTTGCCTCACGAGTGGGTCATGGATTGTGCTGGCATCCTCACTGCTTTGTATGCTGCATGTGTGCTGAATTGCTGGTGGATCTAATCTATTTCCATCAGGATGGAAAGATCTACTGTGGCCGCCACCACGCTGAGCGACTCAAACCACGCTGTTCAGCTTGTGATGAGATTATCTTTGCAGATGAGTGCACAGAGGCAGAAGGAAGGCACTGGCACATGAGGCATTTCTGCTGTTATGAATGTGAGGCCCCACTAGGTGGCCAGCGCTACATCATGCGTGAGGGACGGCCTCACTGCTGCAACTGTTTCGAGTCACTCTATGCTGAGTACTGTGATGCTTGTGGAAAACATATAGGCATAGACCAAGGACAAATGGCATATGAGGGTCAACACTGGCACGCCACTGAAGAATGTTTCTGCTGTGCTCGCTGCCGTCAGTCTCTACTGGGCCGTCCCTTTCTGCCAAAGCAAGGGCTCATCTACTGCTCTCGCCTCTGCAGCCAGGGAGATGAGCCTGATCTCTCAGACTCCTCTGATTCTGCTTTCCAGAGTGCTCGTTCACGCCAGTCACGCCGCAGTGCACGAATTGGCAAGCAGGGAGCAAAGAACAACAAGGCAGAAAGCGGCAGGCAGCCATCAACTGGCTCAGCATCTGCAACAGGTGAGCGGCTTTCAGTGGATGCAGATTCCCTTGTTGTGCAAATGGACCTACTAAGTGTGTCCAGCCCGGCTCCCAGTCGTACTCCAAACCGCACACCAACAAGAACCCCAAGTAGGACCCCAAGTCGTTCACCGAGCCTGAACCGCAAGCAGTCTGTCTGGATGAGCAGGGAGGAGCCATACTCCTATGAGTCCAATCAAAGAGATCCTTCCCCTTCCCCAAATCCCCATCAGCTACGGAGCCAATGTAGCATCCGGAGCCCATATCCTCCCTCTCCTAGCCAACCACCCAAAGTGGTGAGCCCTCCAGAGTCCTGGCACAAAGAGCAACCAGGGAATAATCCCAAGAAGCCCCCTGTTATGGCAGCCCTGAGAGGCCACTCTTTTAATGAAAATTGGATGCACCATGGGCAGGAATCTGAGTTCCATCCGCCCAAACTGAAGACACAGATGAGTTTCAATGAGGTATCTAGTCATGGGGCTGGGTTCTTAGACAAACgcagtgtcagtgtgcaagGCTTCCCCAGGGACATGAGGCCTCCACTTCTAAGGAGTAGACATCACATTGGCCCCAGCTTTGGTGAACTGACACCCCTTGAGCAGACACCACGAGGATCTGCAGACTCCCTGGCCCTTTCTTATGCCACAGGAAACTCTTTGGATGGGACTACAAGGCGCCAGGAGCACCTTTCCCGCTTCTCAATGCCTGACTTAAGCAAGGACTctggtgtgaatgtgtctgaGAAAAGTGCAATGGGCACCCTAAACTCATCCATGCAGTTCCGCAGCACTGAATCCCTTACATCAGTCCCTAGACCTCTTGCTGATCTGGGAATGCCAGTCAGACTGAGGTACCCACCACAACTCTACTGGAACTCTTCTAGAGGCCTCAGCTTTGAAGAGCCAGCCAAAGGTCGCATGGGTCTGGCAGGGAGCATGGGAAACGTTCATTCAGTGACACCACGACCACGACGAGCTAACACACAAGACTCTCCACGACAACAACGGCCAAGGCAACAGCACCATCGCAAAAGTCATAAGAGACACAAAGGCCACCATCGATCCCGCCGCTCACGCTCAGATAATGCCCTTCATCTGGCTGCTGAAAACCAGGGTTACCCTAGTGACCCTGTTCAGAGATTCCATGATGACTTTCAGCGGTTGCCCTCAAGGATGTCACGTGACACTTTTGGGGGAAATTATGCATGTAGGCAGCAGTTTTTCAGGCCTTGCCCTCGAACCACATCTGACTTGACCTTGCAGGACCCTGGAGGTCCAAGACTAGGCCAGTACCTGGGTAGGTATGGAGAGCTGGCAGAAGGTGATGATCACTTTTGCTCCACCTGCTCCTCTTCATCAGAAGCATCCGATGATGAAGGCTACTTTATGGGAGAGCCGATTCCTCGGCCAGTACAAGTGCGTTACCTTGACAACGAGGAGTTGAGGCAGCGTTATAGTCCCACTTTGATGGGTGGTCACTCCCAGCTACACACACGTAGACGCAGAAAGAGTAAGAATTGTATCATCTCATAAGAGAGAGTTTGTACCTGTGtgggtgttgtgtgtgtctctttgtgtctAGATTGTAACCTTATTGAAGCATGATCAAATCATAAACAAGAAAAACTTGATGATGTCCTCTGGATCTTATCTCCGCTGTTTACTGTGACAGAAGATGGCACAAAGAAATGCATCATCTCATAACGCAGgttctgtgtctgtcagtatgTCTGAGTATGTAACTTTATTCAAATAACTTACTTAATAGATTGTAATCTTACTTAAGCATGATCAAATCATAACCAACAAAACTTGATCATGTCTTCTGGACATTATATTCTCTGTTTACTGTGACACAAGATGACTTCATGTGTGAACAATTTGAATATTACATTAATCATTGTATATTCAAGAACACTTAAGTTCACTTGTAGAAACGTGCAATAAGGATGTGCTATGTACCGGTGGTTTGATAGGAAAAAATAGGAATGAGACTCAATGTGCACTGAAAGAACTGTTTAGAGTCAAGAATTGGTATTGGTGGGTTACCATGATAACTGGCTTTCATTACAATTGTATTCTAATCTTGTTTATTCAGAAATGTCTTAAACTTGTGTTACTGTACATGTAAGGAGTGAAAGATTGCTAGCTCAGTCATTGATCTGTCAATACTGATTATGAAGTCTGATAACGAAGACTGAGGGGACTTGGCTTTAAATGCAAATCTTATCTGCCCCAGCTTCAAGGTAaaatttctctcttctttttttgctctttaaatctgtctctctatcttttatTGTCTATTTGAGAGCCAGTTCATCTGGACCCATATACTAGTTATTGTTTCCATTGTTCTAATTGCTTGCACCCTGTTCTATCAATGACATATTAAAATAACTTACCTTTGCTTTTGAGAATAGCAATGTTTGGTATAGTCCTGTTTTAAAtgcaatataattttttttccaaagtccacattttaataatgttatctTTAAATTACATGTATGTACAGTGATTTTCAAAAGTAATATAAGTCATGGCTGTAGTattgtaaatgttatgtaaatatagtcttaaatatttctatattttgtaTCCTCAGAAGCATTATTTGTATCATATTGTAGAGCGTTAAATGCATGTAT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04511 PRICKLE; prickle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160650 lncRNA upstream 311219 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 311219 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 337617 20937123 ~ 20939070 (+) True G136057
TU160256 lncRNA upstream 1091141 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 1261917 20014522 ~ 20014770 (+) True G135643
TU161105 lncRNA downstream 32673 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 46667 21360839 ~ 21361880 (+) True G136433
TU161152 lncRNA downstream 360686 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 360686 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 483104 21797276 ~ 21797808 (+) False LOC113533123
XM_034306363.1 mRNA upstream 26062 21223634 ~ 21250625 (+) True LOC113533151
XM_034306364.1 mRNA upstream 26062 21223634 ~ 21250625 (+) False LOC113533151
XM_034306372.1 mRNA upstream 90763 21075827 ~ 21185924 (+) True LOC113533118
XM_026925859.2 mRNA upstream 216387 21034464 ~ 21060300 (+) True gabrd
XM_034306267.1 mRNA upstream 342999 20916823 ~ 20933688 (+) True tkta
XM_034306833.1 mRNA downstream 24254 21338426 ~ 21355283 (+) True LOC113533443
XM_026925485.2 mRNA downstream 54634 21368806 ~ 21394676 (+) True nadka
XM_034306716.1 mRNA downstream 54634 21368806 ~ 21394676 (+) False nadka
XM_034306717.1 mRNA downstream 69359 21383531 ~ 21394676 (+) False nadka
XM_026925521.2 mRNA downstream 102720 21416892 ~ 21433503 (+) False LOC113533389
TU160573 other upstream 528831 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 544216 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 834496 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 373952 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 374348 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 375495 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 375853 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 376249 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile