RNA id: XM_026925146.2


Basic Information

Item Value
RNA id XM_026925146.2
length 2516
RNA type mRNA
GC content 0.38
exon number 13
gene id stac3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19671421 ~ 19682627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaGACATATGCCTATTTTAACAATCAGGAGAACAACTGCGGTTTATAGTTCACATACAGTTAGAGGGATATTTACTGTTACAGCCACCACTGGACTGGACTTTAGGCACTTGATTATCTTGCTGTGGtacttttcataaaaaaaaaaacaacaaaaaaaaacttaatctGACGACTGGGGTTTAGTACCCCAGAAGCCACAGAGTCTGCTTACTACCAAAGTTCTTACAGGATTAAATACTGCACCATGGCTCAGTATGATCAaCTTGAGGATAAGGACTCTCTGGATATCCATGATAACCCGCCAGTACCTGATAACGTGGTCAAAGAGGATGACAACACTGTATATTTTCTGTATGATGAAGAGGTAGAGGAAGAAGAGGCTCCCCCTCCCCCGACTCCTGAGCCTGTGGTCCTAGTGAATGACAGGCCACATAAGTTTAAGGATCACTACTGCAAGAAACCCAAGTTCTGCGATGTCTGTGCTCGAATGATTGTCCTCAATAACAAATTTGCCCTGCGCTGCAAGAACTGCAAGACCAATATTCATCATGCATGCCAATCCTATGTGGAGTTCCAGAGATGCTTTGGCAAAATACCCCCAGGTTTCAGGAGAGCGTACAGCTCCCCTTTGTATGATCAGGAGATAAATAACCCTGgccaaCAAAATCGCACTGACCCAGTCTTTGACACTCTGCGAACTGGAGTTATCATGGCAAataaggagagaaagaaaagttcAGAAGATAAAAAGAATatgatgatgatgatgatggaggaagaagaggcTCAGCAGCCCAAAGAGGGTGAAGAGGGGGGTGAAGGAAAGCAGGATGCGGATAAAAAAGACAAGTCGGCTGCAGACGACAAGaataaaaagcagCAGCAGACTTTTAGTCAGACTCACTACTACCTGGCTCTGTACCGTTTCAAAGCAATAGAGAAGGATGACCTGGACTTCCATCCTGGTGATCGTATTACAGTGATTGATGATTCTAATGAAGAATGGTGGAGGggTAAGATTGGGGAGAAAACAGGTTACCTTCCCATGACTTACATCATCAGGGTGCgtgcaggagagagagtgtataaGGTGACACGCTCCTTCGTGGGGAACAGAGAGATGGGTCAGATCACACTAAAGAAAGAccagATAGTGGTGAAGAAAGGAGAGGAAGTGAACGGCTATCTGAAAGTCAGTACAGGCCGTAAACTCGGCTTCTTCCCTGCTGATCTACTACAGGAGATCTAAATGACAACAAAGCACTAGTACAATGTGCCTACATCAGCAAATAACAAACAATATGAACAAACCAATAAAATTAAGTTTGATTTTtcaaatatatagaaatatagtaGAATAGTAGCAAGGAAATGTTATGAAATGGTACCTCAAATATTTGGAATCATAACCATATTTGCTACAATATGGATATGATCCAAGCAACCcttggaacacacacacacacacacacacacacacacacacaccatcatcatcataaaaacAACATTTGTGGGAATATCTTATGGAAAAATGGTGTCTATTACTCCAGTACAGTTCTAGAGTATTGTAGAATTGAAGCCAAGGTGCTTTGATGCTGTTCTGGAGGCTCATAGTAGCTGAAACCCTCACTAAAATACTGTATGCACATCTAACAAATCatgtaaaagtttaaaaaataattaaatgaaagcttctaaatatctaaatattgcCTTGtgtataaaactgtataatttCTCATAGGTACACTGTAGTGCACATGTATAAGAAGGTGTGCCTGTAGGTTGTTCCAGAGGTGTTTAAGAACTTCCTTATGCATACTTTGGCTGTATCTTGCTTCTGTCCTTGCAGGGAAAGTCTGCCTTGATTATAGTTTTAACAGAAATATGGTCTGTAACTTAATATGGTCCATCAGTTAATACATGACaaggtttttctgtaacatttagttTTTAAGTAAATGTTTGGAACACTGTTTTTTCCTAATACTCAAGACATATAAAATCTTATaagataaacatttatatatacattactgTGCAGTGGCTCATGTTACTATTGTTGGTATAGAAATATACACTTATGTATCTTGATGATACTCTTTacacaatatatttaatattcaaaattGAGAAGAAAGTAAAGATGTGCAGAGAAACTGGGAAGAATTATAATTTATTCTTAAAAGCataatttatgtaatatttaaaataatttaattgccTAACGTAATCAGTATTTGTGGGGAAATAATCTATCTTAATAGTCATATTGTGTTGTGAACATCAGTTTTGACTAGAATTTAAGTATTTGTAACACTCTAAtaacattctgtttttatctggtATATCTACTGAGCATACTCAGGTCCTGACTTATTGGTGTCCTGCAAATTTTTTGAGAAAACTGACACAAAAATCAAAGATTGATGGCAGCTTATCTGCTTAGTTTCATATACTATACAGATACATTTTCAATTTCTAAATAAAGCAGCTATTTTTGTATCACA

Function

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159884 lncRNA upstream 44678 19619315 ~ 19627828 (+) True G135352
TU159898 lncRNA upstream 56849 19614875 ~ 19615657 (+) True G135363
TU159873 lncRNA upstream 113234 19558234 ~ 19559272 (+) True G135341
TU159824 lncRNA upstream 155761 19432632 ~ 19516745 (+) True G135294
TU159931 lncRNA downstream 21635 19704262 ~ 19704467 (+) True G135393
TU160018 lncRNA downstream 34010 19716637 ~ 19716979 (+) True G135466
TU160034 lncRNA downstream 161318 19843945 ~ 19902367 (+) False LOC113533656
TU160085 lncRNA downstream 322492 20005119 ~ 20005708 (+) True G135524
TU160219 lncRNA downstream 329940 20012567 ~ 20012767 (+) True G135641
XM_034306334.1 mRNA upstream 74450 19578002 ~ 19598056 (+) True map3k12
XM_034306808.1 mRNA upstream 169798 19501493 ~ 19502708 (+) True LOC117597842
XM_034306343.1 mRNA upstream 182948 19484175 ~ 19489558 (+) True LOC113533274
XM_034306355.1 mRNA upstream 252568 19418750 ~ 19419938 (+) True LOC117595725
XM_034306322.1 mRNA upstream 269489 19398738 ~ 19403017 (+) False LOC113533125
XM_026925225.2 mRNA downstream 41395 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA downstream 41395 19724022 ~ 19730524 (+) False LOC113533240
XM_026925228.2 mRNA downstream 41395 19724022 ~ 19730524 (+) False LOC113533240
XM_026925226.2 mRNA downstream 41395 19724022 ~ 19729304 (+) False LOC113533240
XM_026925230.2 mRNA downstream 47996 19730623 ~ 19755646 (+) True bpifcl
TU159806 other upstream 169863 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1210572 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1623617 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2375623 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2937171 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 539788 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 539788 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 539788 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 539788 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 539788 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile