RNA id: XM_026925163.2


Basic Information

Item Value
RNA id XM_026925163.2
length 2310
RNA type mRNA
GC content 0.41
exon number 8
gene id vsig8b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18204157 ~ 18215143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACAATCCAGTAATGTTCAGACTTTTTATGTAAGGTTTGATGAGACTTTATGATTTCTGATTTGGCAAGCATTAGAGCAGTGGTGGGGATGATAACTTAGAATAATGGTGACCACCAATTTACAGCTACCATCTGAAGATCTCTGTGTAATTTGATTCCTAGCTATTGAAGATCCCATTCTGAGAATGAAGTTAATATCCCTGACAATGATAAAGCATTGTACTGGATTTAGAGTTTCCTTGGTTGTACTGTATGCTACAGCAGTCTATCTAAATTATGTGGTGGGCATACAGGTGACCTCCACAGGGCCACAGACAATCAAGAAAAGACAGGGAGCAGATATTATTTTGGGCTGTACCTACAGTGAGAGCCCATCTGACACTGGGCAGCTGGATGTTGAGTGGTCCATTGTCAGTCCAGACATGACTCAGAAAGACAAGTTGATCTTATCTTACTCTGGGGGGAAGGAGTACAACTTTGGTGACCCAGGCCTGATGACTCGACTAAAGTTTCTGGGTGACCCCAGCAAAGGAAATGCCACCATCACCATCTCTTCACTACGTGTCACTGATACAGGCACTTATGAGTGCAAAGTGAAGAAGCCACCCGGAATAGACTCACGGAAGATCACTTTAGTGATACTTGTGCAACCCTCTGTGCCCAAATGTTGGGTTAAAAATGGTGAGGAGGTAGGAGGTACTGTCTCACTGTGGTGCAAATCATCTGAGGGTTCAATTCCTCTAATCTACAAGTGGACAAAAGAGAATGGTGAGGCATTGCCATCCACAGCATTACAGAATCCTCAGACTGGAGAGCTGCTGATCTATAACCATTCACAGAGCTACACAGGCAACTATGTGTGTTTGGTCAGCAATGACGTAGGGACGGCGCAGTGCAAATACACATTGAAAGCATATAATCCAATCAATAAGGCAGGAGTAATTGCAGGGGCTGTGATAGGTGCATTGCTGCTTTTGCTCCTCCTCCTACTGTTAATCTGGCTTCTTGTATGCTGCTACCAGAAAAAACGCTACGAAAAGGAAACTGCCAATGAGATCAAGGAGGATGCTGCAGCACCAGAGAGTCGTCCTGGTAGCAGGTACTCTAGTTTCCGCTCCATCGTGGGTTACCACCCCCATCAGGGAGTCACCTACAGCTCAGTTAGGAGCAGTAAACCAAGAAGGGATTCAAACCGCAGAAGCTTCAATACCGACCAGAGTCAAGCACCTTCACAAGGCCCACTAACATACAACAGCAGATATGGGTATCCTGTATGAACACAGTCACCTTGCCAAGAATAGATCACTATGCTGAACAGATGGAATGCCACTTGGATTGAATACTGCTATGACATCAAGGATTTCCATGACATTGCTGGGTTTTCCCACTGTGTATTTCTCTGTGGCATCACCCAAAATGTCTGTGTCCTTTTGAAGTGATATTGAAACTGATGTATTTTGTATTAAGTCATTTAATGTATGCAGtcctgtgcaaaaaaaatggcCAAGCCCAAAGTGGCAAAACATAAAGCTTTTAATTGTCTTAACAAATCATTGGTTAGGAAATtagtagtaaataaacaaatagataaagtaaTTTAGGATGGAGCTTTTCATACTAAGATTTTtgctttgatttctttaaatcttAAAGGCTTGACCAGGCCAAAACATGAACCTGATGGACTTGTTCTCAAGCTACTTCTTGGTGTTCAGTGTGGGCAGGagcattgtcttgttgaaaagTGAGAACTGTACATTTCAGATGGTCATCCATGCATAATATGGCTTAGAGCCTTCCAGTTCCTTTCTTTCTAGTAACAACACCTGTTGTTTCAAAGCATTGTATCTTAGTAGCTGATAGAGAAATAGGGATTTTATCTACCTTTAGGATCTTGTGAATTTCAGAATAACTACAGTTGGCCTGACCAGCTATGTAATTTCTGATAGCAACCCTTGCATGATATTTTCTCACTCCTTTACCAAAATTGCATATATAGATCTCTCCCTGCTCTGTCACTCTTGGTTCTTTTTATGATTTCTGACATCAACCCCtgtatattttgctttttttggaGCAGATTTTCTCACTTCTTTACTGAAATTGTATATTGTAGCTCTCTCCCTGCTCTGCCACTCTTGGTTCTATTTATGAACTTGTTATCAGGGCTTTGTGGGCTGCATCGAGTGGGGCAGATATTTTTGGAACGTTTTGTACATCCAACTAGCAAGTGTTTACCTTACTCAAATTGAATTTTAATGTAtcttatgtttttatatgttcACTACAAGTCAGTGTTTTTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159097 lncRNA upstream 84261 18121879 ~ 18122161 (+) True G134655
TU159020 lncRNA upstream 121943 18074135 ~ 18084479 (+) True G134598
TU159027 lncRNA upstream 167116 18031925 ~ 18039306 (+) True G134604
TU158992 lncRNA upstream 258460 17947331 ~ 17947962 (+) True G134586
TU158963 lncRNA upstream 304517 17901705 ~ 17901905 (+) True G134557
XR_003403399.2 lncRNA downstream 55353 18270496 ~ 18271764 (+) True LOC113533180
XR_003403400.1 lncRNA downstream 56802 18271945 ~ 18272850 (+) True LOC113533181
XR_003403401.1 lncRNA downstream 57293 18272436 ~ 18272850 (+) False LOC113533181
XR_003403420.2 lncRNA downstream 180718 18395861 ~ 18416432 (+) True LOC113533555
TU159253 lncRNA downstream 221067 18436210 ~ 18444619 (+) False pbx3b
XM_026925247.2 mRNA upstream 14827 18144047 ~ 18191595 (+) True snrnp200
XM_026925786.2 mRNA upstream 88347 18087941 ~ 18118075 (+) True plat
XM_026925794.2 mRNA upstream 158101 18030975 ~ 18048321 (+) False vdac3
XM_026925795.2 mRNA upstream 158101 18030976 ~ 18048321 (+) False vdac3
XM_026925793.2 mRNA upstream 266727 17928821 ~ 17939695 (+) True polb
XM_026925385.2 mRNA downstream 26786 18241929 ~ 18251704 (+) True acaa2
XM_026925657.2 mRNA downstream 37603 18252746 ~ 18258724 (+) True rpl6
XM_026925112.2 mRNA downstream 58520 18273663 ~ 18275468 (+) True dgcr6
XM_026925166.2 mRNA downstream 76346 18291489 ~ 18297481 (+) True vgll4l
XM_026925843.2 mRNA downstream 221042 18436185 ~ 18681932 (+) False pbx3b
XR_003403426.2 other upstream 157533 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 909539 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 1471087 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1605837 16580453 ~ 16600585 (+) False mtmr3
TU158256 other upstream 1612019 16580453 ~ 16594403 (+) False mtmr3
TU159255 other downstream 221067 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1272344 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2007272 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2007272 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 2007272 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile