RNA id: XM_026925197.2


Basic Information

Item Value
RNA id XM_026925197.2
length 1471
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC113533224
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22205877 ~ 22212021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGAGACAAAGTAAACAGATCTGAGGAAGTTCAATCAAAAGACAGAAAGGCTGTTGGACAAGGCTGTCACGTAACGCTTTTAAAGAATGGATCCGTCACGTCCAAAGCTTATTGACTTCCACGGTGTTTCTATGACACATATTTTCACGGACAACTGGGACAAAGTCCAGAACTTTAAAGCTAAACCAGACGACATTGTTGTTGCCACTTACCCCAAAGCAGGCACCACTTGGATCTGCTACATTCTTGACCTACTGTATTTTTATCAGACGTGTCCTGAGCGTGAAAAATCTATCCCTATCTATGACAGAGTGCCATTTTTAGAGTTGATATGCCCACCGTATCCTACAGGAACAGACATGGCAGATACACTGCCTACCTCTCCTCGCATCATCAAAACTCATCTGCCTGTTCAATTTCTACCCAAGTCCTTCTGGGAGCAGAACTGCAGGATTGTTTATGTTGCTCGCAATGCTAAGGATAATGTTGTTTCCTATTTCCACTTCGACTGCATGGAGAAAGGTCAACCAGAGCCAGGAGACTGGAGCAGTTTCTTACAAAGATTCAAAGATGGAAAGATGGTGTTTGGCTCCTGGTTTGACCATGTGTGTGGATGGTGGGAAAAGAAACAGACGTACTCCAAAATCCACTACATGTTCTATGAGGATCTGGTGAAGGACACTGGACGTGAGCTCAAAAACCTTTGCTCCTTTCTTGGTTTATCCACTTcagaagaagagaggaagaaaatcTTACAATGTGTTCAGTTTGATGTCATGAAGGCAAATCCTATGACTAACCTATCTAATGAGCCATCGCTAGACTTCAGTGTCTCTCAGTTCCTGCGTAAAGGTAAAGTCGGCGACTGGAAGAATCACTTCACCGTGGCTCAGAACGAGCAGTTTGATGAACACTACAAGCAGAAGATGAAGAACACAACCTTACAGTTCCACACAGAGATTTAGGGTGGTATCTGGAGAAAATCCCAGAGAGAAAAATCTAGTTGAAACAACAATGATTAGTTAAAAATCAGTAGTATTAAATCAACataaatttacaatatttatttataatcatctTTCACAGTGTATGAATGTTAATGTAACCAGACTACACTTgtgtaaaacataaaattgtgacataattgtaattgtaaaacaATCACTTATGGcctacaattattattattattattattattattattattattattattaataataataataataataatagaaaagaaagaaagaaagtatagctattttctaaaaatgtcaggaaatatGTCAGTCCATTGACTCCCTCCTCATGAAAGAAGAAGACCCAAAGTTCCAAGAAGTTccacagagaaaataaatgaagtggGTTAGAAAAACAAGTCCTCTGCCACATGAGCCATCTACTGACAACTGAAaagaatgaatcagtgaatgaactGAATAATGAATTATACCTAATGCCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01014 SULT1A; aryl sulfotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161800 lncRNA upstream 56100 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 82126 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 346209 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 366025 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 380555 21824989 ~ 21825322 (+) True G136532
TU161862 lncRNA downstream 92708 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 254746 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 256613 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 259020 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 297190 22509211 ~ 22509494 (+) False LOC113533405
XM_026925194.2 mRNA upstream 717 22196749 ~ 22205160 (+) True LOC113533222
XM_026925195.2 mRNA upstream 717 22196749 ~ 22205160 (+) False LOC113533222
XM_026925196.2 mRNA upstream 11153 22187820 ~ 22194724 (+) True LOC113533223
XM_026925368.2 mRNA upstream 24386 22174129 ~ 22181491 (+) True LOC113533311
XM_034306843.1 mRNA upstream 35130 22163978 ~ 22170747 (+) True LOC113533433
XM_034306976.1 mRNA downstream 40252 22252273 ~ 22266629 (+) True qars1
XM_034306526.1 mRNA downstream 55037 22267058 ~ 22359048 (+) True mtor
XM_026925220.2 mRNA downstream 55037 22267058 ~ 22359048 (+) False mtor
XM_034306527.1 mRNA downstream 60898 22272919 ~ 22359048 (+) False mtor
XM_026925730.2 mRNA downstream 148769 22360790 ~ 22376465 (+) True exosc10
trnaa-ugc_5 other upstream 515385 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 515781 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 516139 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 517286 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 517682 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1036327 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1302565 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1538396 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1799596 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1799596 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile