RNA id: XM_026925228.2


Basic Information

Item Value
RNA id XM_026925228.2
length 2533
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC113533240
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19724022 ~ 19730524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacactcgtgcgCAACTGGCATTTGGCACACTGATGAGTTGGTGCGCGTCTGCTACTGCACtagatggaaaaagaaaactaGTGAAGTAGGAATCTTTTTGTATTGGATTACTCAATTTATTCTTGGATGTATTTCAGAAAGAAAAGACCAGCACGGATTATTTGAAGAGAAAAGACATTCAAGGGAATATGCAACAGGAATGATTCGTGTTCGGTGATCTGCCTCGTTTACgcacaaaaaaaagtgatcatTTCATTAATTCTTCAACATCCGATCCTAGACAGTTTAATAATCATGGCTCATCTCATACAGCACAAGATTTCCAGTAAAGTGATGAGTATAATGAGCAGCGCGTCTCAGAAATCCGAGGTGAAGGTGAGCCGGGTGTTTGCGCGCCTCGGCTTCCAGGCGGCCACTGATGAGGAAGCTCTGCCTTTCGCTGATCGTGATGGCCTGGATTACGATTACAGACATGGCATGAGAATGGACGAAGTCAGGACGAGCGGGGAAAGAGATGGAATGGTGGCGGAAGACAGTCATTACCAAAGACACGACACCAGCCCGTCAGGATCCCGGAGAAACAGCGAGGCGCACGGAGCGCAGGACAAAGCGAAAATCACAGCATGGGATGCGGGCTGGAACGTCACCAATGCGATTCAGGGTATGTTTGTCTTGGGCCTCCCCTATGCCGTCCTGCACGGTGGCTACCTGGGCCTCTTTCTCATCATCTTCTCCGCTGTGGTGTGCTGCTACACAGGCAAGATCCTCATTGCGTGCCTCTATGAGGAGAACGAGGAAGGAGAGCGTGTACGCGTGCGTGACTCATATGTGGACATCGCGAATGCTTGCTGTGCGCCACGCTTCCCTGTGCTCGGTGGCCATTTTGTGAATGTGGCGCAAATCATTGAGCTGGTGATGACATGCATCCTTTATATGGTCGTCAGTGGCAACCTGATGTATAACAGCTTTCCGGGCTTGCCCATGTCACAGAAGGCATGGTCAGTGATTGCCGCGGCAGTGCTCATGCCGTGCGCCTTCCTGCGCAACCTGAAGGCTGTTTCCAAGTTAAGCCTGCTGTGTACAATTGCACACTTCATCATAAATGTGATGGTGATTGCCTACTGCCTGTCACACGTGCAGGACTGGGCGTGGGACAAGGTCAAGTTCTACATTGATGTCAAGAAGTTCCCCATTTCTATTGGCATTGTTGTTTTTAGCTACACATCACAGATTTTTCTGCCCTCACTTGAGGGCAACATGCAGAAGCCTGCTGAGTTCCATTGCATGTTGGAGTGGACACACATCGCTGCATGCATCCTCAAGGGCCTGTTTGCCCTTGTAGCCTACCTCACATGGGCCGACGACACAAAAGAGGCCTATATGATGATGAAGcagctccttcttcttcttattaacaacaacaacaacgacaataataataataataacaataataataataataataataataattattattattattatttgcttatCTTCAGTAAGATCTTTTTATCTTGTTTAGGGTCATtctggatctggagcctattccaggaacactgtcagcgaggcaggaatacactgtGGCTGGAACACCAATCCAtagcagattattattattattattattattattattattattattattattatcatcttgTCTGTTtgttatattacatacatgtgtaaCATGTATTTCAATCCATGCAGGCCTAAAATATGTATGGACTTAACTTAGGCTGAGGACACATGGGATACTGGTGACACATCCTCACCACCTTTAATCACAGCTTagtcatataaaaaaaaaattatactattGCAGCTCGCAGCAGAAACAGATCCAAATGCTttctaaaaatatcagtttagcCCTACTTGCTGTGTTTAGcttagtttggtttggtttggtttaacTTAACACAGCAAGAGCAAGTTTCTAGTAGGTTTGCTGCCAACCTGTactgtgaatttatttatagaaagttACAATTGTTATCTTGTGGCATATATGCGAGTGAAGCTCTGTAACAGCTCTAGCAATCATTATATTAGCCAATCTAATCAGCATAAGAAATCACACTCTTGGTGtatcttcatttcatttgaatttcATTTTCTGTGAAGTTTGACAGCAACTTGGTAAGTAGAACATTTCGTGCTAGTAAGTTTATTATCTCATAATAGTTTTATGTACACATGGGCTATAACTTTCTATTAAATTTCTTGTTTTAAGGGTTGGTGATCTTGGACAAGGATAAAACCCTGGCCGTGGTGGTGATGACCCAACAACTTAACCACTGCTCAACAGGCTAGGCAGGACTCAATTGCAGAGAAACTCCTGGAGACAGAGATGggggaataaaacagaaaaaaatctttacttcAGAAAGAATCACCAAAAAAGCAAACAGAGATACAAAGACAGACCAACAATAAAACAGATTTGAACAACAAATCAGGAGCAGGTGAAAACAATAACAAAGGTTAACAggcaaatgagaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160018 lncRNA upstream 7043 19716637 ~ 19716979 (+) True G135466
TU159931 lncRNA upstream 19555 19704262 ~ 19704467 (+) True G135393
TU159885 lncRNA upstream 25283 19625304 ~ 19698739 (+) True G135353
TU159884 lncRNA upstream 96194 19619315 ~ 19627828 (+) True G135352
TU159898 lncRNA upstream 108365 19614875 ~ 19615657 (+) True G135363
TU160034 lncRNA downstream 113421 19843945 ~ 19902367 (+) False LOC113533656
TU160085 lncRNA downstream 274595 20005119 ~ 20005708 (+) True G135524
TU160219 lncRNA downstream 282043 20012567 ~ 20012767 (+) True G135641
TU160221 lncRNA downstream 283998 20014522 ~ 20014770 (+) True G135643
TU160256 lncRNA downstream 450269 20180793 ~ 20185546 (+) False LOC113533164
XM_026925147.2 mRNA upstream 41395 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA upstream 41395 19672506 ~ 19682627 (+) False stac3
XM_034306334.1 mRNA upstream 125966 19578002 ~ 19598056 (+) True map3k12
XM_034306808.1 mRNA upstream 221314 19501493 ~ 19502708 (+) True LOC117597842
XM_034306343.1 mRNA upstream 234464 19484175 ~ 19489558 (+) True LOC113533274
XM_026925230.2 mRNA downstream 99 19730623 ~ 19755646 (+) True bpifcl
XM_026925229.2 mRNA downstream 4352 19734876 ~ 19755646 (+) False bpifcl
XM_026925232.2 mRNA downstream 8524 19739048 ~ 19755646 (+) False bpifcl
XM_026925231.2 mRNA downstream 8530 19739054 ~ 19755646 (+) False bpifcl
XM_034306574.1 mRNA downstream 95274 19825798 ~ 19853849 (+) True LOC113533656
TU159806 other upstream 221379 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1262088 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1675133 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2427139 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2988687 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 491891 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 491891 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 491891 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 491891 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 491891 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile