RNA id: XM_026925230.2


Basic Information

Item Value
RNA id XM_026925230.2
length 4629
RNA type mRNA
GC content 0.45
exon number 17
gene id bpifcl
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19730623 ~ 19755646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGGGTGCGTATGGAGgcagggacaaaaagtcaattGGGAGGACCTCCTGGCTCTAGGGGGCGTCCCAGTAGAAGAGCAGCATAGAGTTTTGTGCATGTACTTTGCCCACAGGAGGTAGGTGCTCCAGGAGCTTGAGTTAGTAAATGCCTGGCAGCAAAGAGTTGTCTCCAGGTCCGGTTCAACCTCTCTTTTTGGCCATTGAACTTGGGATGGAAACCAGTGGAGAGGTAGGCCGACACCCTGATCAGCTGCCAGAACACCTGCCAGAACTGATAGGTAAACAGTGGCCCCTGATCAGACACTGGGACTTGTGGGAGACCATAGACTTggaaaacatacatacacattagtTCAGCAGTGACTTGAGCAGAGGGGAGTTTAGGTAAAGGGATCAAATGGCATGCTTTGGATAATCTATCAATTACCACAAGAATGACAGAATAACTTTGAATGGTGTGTAGTCCTGTTATGAAGTCTATTGATATGTGGGACCATGGTCTATTGGGGATGAATAGTGGTACAAGCAGCCACAAAACTCTGTGTATCTGCTTCCATGCTGGGCCACCAAAAGCACCTCTTGATGAAGTCTAGGGTCAGCGTAGCACCTGGATGACCAGTGAGGTGAGAACCATGCCCCCTTTGCAGTACCTGGGTGTGTACAGAGgcagggacaaaaagtcaattGGGAGGACCTCCTGGCGCTAGCTTTTGCTGCCTGGATGAACATCTCAATTCCCCAGCGAACTGGGGCTTCAGTGATGGAACTAGGGACAATGGGTTTGGGGTCTCAGGTTAGCTCTGGTGGTTGAAATAGTCTGGAAAGGGGTCCAGCTTGAGGTTCTTGTAACCAGGATGGTAGAAGAGGGTAAACTGGAATCTGTTGAAGAACAGAACCCACCTGGCCTGATGGGGGTTTAATCTCTTGGCCTGCTAGATATATTCGAGATCCTTGTGCTCAGTCCACAAAGTGAATGGTGTCAGTGAGACCAACCGCTGAGATAGCATCCCTCCAACACCCACCTCTGAAGCGTCCACCTCCACTGTGAAGGGGAGGGCAGAGTCAGGCATGACAATGACTGGAGCTGAAATGAAGCGCCTCTTGAGCTTGGAGAAGCCCTCCTCTGCTTTGGAGGTCCAGATGAACCTGGAGGAAGATTTATTAGTCAGGGCTATGAGAGGAGCCACTACAGAGATGAAACTGTGGATAAACTAAATTTGCAAAGCCCAGAAAGTGCTGAACTTCTTTCACAGAAGAGGGAGTAGTGCAGCCTCTGACTGCCTTAGTCTTCTTGGGGTCCATTTGGAGACTGTGTTTAGAGACAATAAACCCCAAGAGGGAGACCTCTGTGGCATGGAACTCACACTTCTCTGGCTATACATACAAGTGGTTCCTCAGGAGGTGTTGGAAAATATGAGGATGTCATCCAAGCATGTCACACAGGATGTCATTGATGAGTGCCTATAAGACCGACAGGGAATTTGTCAGGCTGAACAGCATGACCAGCTACTCACAGTGGCCTGCTGGGGTGTTGAATGCAGTCTTCCACTCATCTCCATCCTTGATGTGGACCAGGTGGTTGGAGTTACTGAGGTCCATTTTTGTATACACTGTGGCTCCTTGCAGTAGCTCAAAAGCTACGGAGACATGAGTGGGGATCCTACTCAAGCAATAACCCAGTGGACCACTCTATGTGAGGGTTATAGCAGCTTAGCCACAGGAGGCCCAGGACAATAGGAAACTCAGGAGAATAAATAAGGTGGAACTGCAACTTCTTTTGGTGGTTATTGATGGACAGGCATACAGGAGTGGTGAAGTGGTGGACACTACCATTGACCAGGGGTCTTCCATCCAGGGCAGTAACTGTTAAGAGCAGCTCAAGGTTGATCAGGGGGATTTGGAGATGGACAAGTCTATGAAGTTGCCGGTATGCCAGAGTCCTTGCTTGGCCAGTGCTGTCACGTGTCTTCCCATTGTGGCCTCTTGATTGGTCAATGCAATGTGAAGCCAATCGAGGACAGTGGTCTCTGGGGAGTTCTGCTCTGCTGGGTCCATTTTACTGGCTCTTGCCTTAAGGGTTGACGACCCTAGACGGGAATTGAACCCTGGTCAACAGATTCAcattcaaatgaataaaaaactaagGTGATCTGTGGAGCTGAGGAAGCCAATTGCGTTTTTGTGGCGTTCCACTCAAGCAGtgcaccttcggtgcttggcctcTAATACAAAGATTATGAAGCAAACTATGTTGGCCAAGCCAACATAACAGcaacacaacaataataaacaatcaCAAACTTGAatttactgtttctttttttttaaggtaaagGGAAGTCGCTGAAGTCAGTGTTGGGGACTGTGTCTAGATCAGCAACCCCAGATGGCTCCCCAGGATCCCCAATGCCATCCACTACAGCAGCAAAAATAACAATGTTCTCAGAATCCTCTGTCTCATCAGCCTCCTACCAGTGGCCTGGTAAAGCAGCAACTGCACTGGATACCACCATACCATAAGAATCTTCTGTAGATTCTgataaatGTGTAACATAAGGCTGGAATGGCAAAAATAAGTATGTGCTGGTAGCAAAGACAAGGGCCATTCAACCTCTATCTGGCATTTATTGTACTGTTCCAAACAGGCAGCTTAAAAGTGAGGTCCAGCAAATCAGTAGTCAAGGCCAAGATGTGGTTGGTTACTACTTTCCTCCTGATGGCTgtaacacagacacatgcagaCTATTCTTCATTGCAAGCTGTTCTGTCACAGAAGGGATTGCAAAAAGTATCTCACTGGATGACTGACTGGCTACAgaatgaaatgagtaaaattactCTCCCAGATGTCAGCGGGAGTGTCGATATTTTTTTGGGCTTGGTTCACTATGTCCTGCATGACATGCATGTCGTGCGCTGTGATTTGCCAGAACCCTCAGTAGCCTTTTCAGAGGGAACAGGTGTATCTCTGCAAGTGAACGGACTCTCCCTCGCCATCAATGGTCTCTGGAACACACAGTTTGGCATTATTCATGATTCGGGTTGGTTCGATCTGGCTATATACACCATCAATTTCAACACACTGCTGGAGTTTCAGAGCACTGAAGAGCACCTTTCCATTTCAAGTGTCATGTGTTCTGCTGATGTGGGAAGTGTTCAAGTACATTTCCATGGTGGTGCAAGTTTCTTCTTCCAACCATTTGTAGAAAAGTTCAGTGGACGCATTAAAAATATGATCCAAGAAAGGATATGTCCAGGATTTCAGGAAGGAATTGAAAATATCGACAAAGATCTGGCTGCATCTGATAACATAAAGATGGATCCTTACGTGTATTTGAATGTTTCTCTGACTGACTCGCCTGCTGTTTTTGACAACGGATTTGAATTGTATATAAAGGGCGAATTTTACAGTCTCAGCTCTCCTTCTGAGCCACCATTTTCACCCAACCATTTTGAGCTGCCATGGAAAGCAGACTACATGCTGTCAGTGGGTATGTCTgagttctgtgtaaactcagcAGCATTTGCCTATCTTAATTCTGGAGTGTTGAACATCACCATCACAGATGACATGATCCCCAAGTCCTCTCCCATCCACCTGAACACAAGCCAGTTTGGAAGCCTGATTCCTCAGCTCCCCAAGCTGTATCCAGACATGGAGATGGAAGTAGTGCTGTATGCCAGTGATACCCCTCTCATTTCCTTAAATCAAACAGTGATCAATGTTAACTTGTCTGCTTCAGCCAAATTCTATGCTGTCAAGACAAACACTGATTTAGTCCCCCTCTTCAGACTGGATATGCAATATTCTTTTAATGCTAAAGTCCGCATTGACGATCAGCTGCTGAAGGGTGTTTTGGAATTGAACAATTTGACCATAGTGCTTGGATCTACAGAGATTGACAAATTCGACACTACACCATTTCAGACTATGGTGAAGCTAGCATTGAACAGCTTTGTCCTTCCCAAGCTGAATGCCCAGTTGAAGGAAGGCCTTCCACTGCCACGTGTGAAGGGTTTCAGCCTGACTAATTCAGTGATGACCATTGAAAACGGATTTTTGGTTGTTGCAACAGACATCAGTAGTCCCTTTGACTTCCTGCAGTCAGACAAACTTTGACCTCTGGACATATTCGTATAATGATAAATAAGGCTTACCCGGTATCACTATCGTGAGGAGAAACATTCTTGAGTTTGCCGTTGATGTGGCAGCCAGGTTTCactttaacagtttttttttttttaataatttctgaAACAAATACACTGTCAAGTAATCATTTACAAACTAGTTTGCTGTATGCGTTGATTCTAAACTATTTTTTGATTATCCTTACGTGTCAAATCAGCCTGTTGAttctttagtgttttttttttttttatgctgtggACTGTTCAATCACAAGCTAGCCATAAATTGCTCTTTTAATTTCCAATTGGTTCATTGTTCTTtccattattcattttatatggTATGTTTTGTAAGGTGGACCAAAGATCCTCGATTATTGCCTATGACTATTTTAATGCGTGGCATAGTTATCCAAATTAATTGTCACTTGCTTGCAACTCAACTTTCCACAGAAATGAAATGCATGAATAACATTAAAAGGAATGTATCTATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160018 lncRNA upstream 13644 19716637 ~ 19716979 (+) True G135466
TU159931 lncRNA upstream 26156 19704262 ~ 19704467 (+) True G135393
TU159885 lncRNA upstream 31884 19625304 ~ 19698739 (+) True G135353
TU159884 lncRNA upstream 102795 19619315 ~ 19627828 (+) True G135352
TU159898 lncRNA upstream 114966 19614875 ~ 19615657 (+) True G135363
TU160034 lncRNA downstream 88299 19843945 ~ 19902367 (+) False LOC113533656
TU160085 lncRNA downstream 249473 20005119 ~ 20005708 (+) True G135524
TU160219 lncRNA downstream 256921 20012567 ~ 20012767 (+) True G135641
TU160221 lncRNA downstream 258876 20014522 ~ 20014770 (+) True G135643
TU160256 lncRNA downstream 425147 20180793 ~ 20185546 (+) False LOC113533164
XM_026925225.2 mRNA upstream 99 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA upstream 99 19724022 ~ 19730524 (+) False LOC113533240
XM_026925228.2 mRNA upstream 99 19724022 ~ 19730524 (+) False LOC113533240
XM_026925226.2 mRNA upstream 1319 19724022 ~ 19729304 (+) False LOC113533240
XM_026925147.2 mRNA upstream 47996 19671421 ~ 19682627 (+) True stac3
XM_034306574.1 mRNA downstream 70152 19825798 ~ 19853849 (+) True LOC113533656
XM_026925933.2 mRNA downstream 70165 19825811 ~ 19853849 (+) False LOC113533656
XM_026925932.2 mRNA downstream 106456 19862102 ~ 19928774 (+) True LOC113533655
XM_026925094.2 mRNA downstream 175733 19931379 ~ 19939003 (+) True LOC113533168
XM_026925086.2 mRNA downstream 295463 20051109 ~ 20171369 (+) True bsna
TU159806 other upstream 227980 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1268689 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1681734 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2433740 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2995288 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 466769 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 466769 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 466769 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 466769 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 466769 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile