RNA id: XM_026925237.2


Basic Information

Item Value
RNA id XM_026925237.2
length 5415
RNA type mRNA
GC content 0.44
exon number 13
gene id crb2b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17411108 ~ 17449062 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTGTAAGGCCCGTCCGAATACACTGCTGCAGCATGggacactcacacacccacaactTCTGTTCCCTGTAATAAAGACTGTCGGAACGACCCAAGGAGATGCTGAGGAAACATTTTGAGCACTGGAATTATTAGAAGTGGAAGTCAGGAATCTCAGGAGGCGATGGAGTTGGGCCGATCTTATTTCAGAAGGTCCAGAGCGCTGCTACTCACCATGATGATGTTCAAATGGGGAATATTCTGCACAGCGAAGGCAGACATATGTTTGTCTTCCCCATGTCAGAATGGAGGCACATGCATAGAAGCGGTGGGTGACTATACATGTTTATGCCCAAAGGAACCACTTATCTATGTGGGTAAAGACTGTGAGCTACTGTATGATGCTTGTGCCCATGTCAACTGTCATAACTGCATCAGCACTCTAGGAATAGATAACTACTTCTGTCCATGTCCAGAGGGCTTTGGAGGCCCTGAATGTACTCATAACTTGGACAAATGTAAGAGCAACCCATGCACTGGAATAAAGAACCGCTGTGTGGATGCTGTTAATGGATATTCCTGTCACTGCCCTAGCGGTTACAGTGGCGAGGACTGCCAGACTCATGTGATGGACTGCTCGGATAATCCCTGCTTTAACAATGCAACCTGCATACAGGTCTCACACGGCTATGAGTGCAAGTGTGGTCGTGGCTTCCAGGGTAACTACTGCGAACATGACATTGACGAATGTCTGTCTCAGCCTTGTCAGAATGGTGCCATCTGCCTTGATGGTATAGATGTGTACCACTGTTTCTGTGTGCCTGGATTTCAAGGTTACAACTGTGAGATAGACATTAATGAATGTGCATCCCAGCCCTGTGAGAACAATGGAAAGTGTAATAATGGGAAGGACCGTTACATCTGTGAGTGTCTGATAGGGTTCACAGGAGTGAACTGTGAGGTCGAGATCAATGAGTGTGAGGAGACTCCATGTCAGAATGGTGCTACATGCCATGACTATGTGGGGCTATACACATGCGAGTGTCTACCTGGGTTTGAAGGCATTAGCTGTGAGGTGGATATCAATGAGTGTATCAGTGTGCCATGCCTCAACAATGGCTCATGTATTGATTTGGTGAACAGGTATAAGTGTGACTGCAGTGGGACAGGGTTTGCTGGGCCAATCTGTGAGGAGGAGATTCTCGAGTGTGCGTCTGAGCCCTGTCAGCATGGAGCCACATGTCATGAGGGAATTAATCAATACATCTGTCAGTGCTGGCCAGGTTATGAGGGGAAGAACTGTGAGATGGATGTGGATGAATGTGAGGCCCAGCCTTGCGAGAATGGTGGCAAGTGTTTCCAGCGCTCTGACCAGAGACATTATGGGGTCTTGGCGCAGCTGGACATGTCTTTCAGCTATGATTATGCTGCCGGGTTTCTGTGCAAATGCTTGTCTGGCTTTAGAGGTGAAAACTGTTCAGTTAACATAGATGATTGTGAATTTGCACCATGCCTAAATGGCGGAAGCTGTGAGGATCTAATTAATGCATATCAATGTTTTTGCTCTCCGGGGTTCACAGGGTTCATATGTGAGGTGAACATTGATGAGTGCAAAAGTGCACCTTGTCAGAATGGTGCCTTGTGTGAGGATGTAATTAATGACTATGTCTGTCACTGCCCTATATCTGTACCTGACCAGCTGCCTTGGGGTGGCCGTAACTGTGACATTGCTTTGACTGGCTGTGTGGATGAGCCCTGCAACAATGGAGGCATATGTGAGCCTTTCCTACATGGAGACAAACACCTTTTTAGGTGCAGGTGTCCTTCTGGCTTCTACGGTGACAACTGTAGCATTCCCACCACTTTCTCATTCTCTAAAGCAGCCTATGTCATGGTGGATGTTCCTTACAATAAGACTTATGACAGTGAGGCAACCAGTGTTTCACTGCGGTTCAGGACAACTTTACCAGATGTAGTGCTATTCTTCAGGGGAAATGCACAGCATTTCTTCACACTGGAGATGATTGGTGGAAATCTCCTTGCTACAGTAGAATCAGGGGACTTAAAGCTGGTGGTGGAACTTCCTGGGAATTTTAACAATGGATTGTGGCATGCAGTGTCTGTTTCTGTAGATGAGATGCTGGTTCTGAGTTTATTAGATAAGAATTACACATATAGTGAGAAGACACATCACAAtcaccatcttttttttcctccacattGTCTGGAGAAAGTCTACATTGGTGGGGTCCCACAAGATTATCTGAAGAAAACAAAGACGCGGACAGGATTTGTTGGTTGCATGGAGGACTTTGTCATCAGTTCTCAGCTTATTCTGCCCCATAATTTCTCCCAAGAGAATGTCATTTACATCCAACTGGGCTGTGAAAAGCCTGAATGGTGCCATCTTGATTCATGCTCTCATCAAGGACAGTGTGTAGACCTTTGGACTGAATACAAGTGTGACTGCCACAGGCCATTTTATGGAAACATCTGTTCCTATGAGTACCCTTCATGGACATTCAGCCATGAGCATAATAGAAGCTTTGCTGCATTTCCCATAACTCGGAGCCACGCTGGTAACATCAGTGTATCATTTTTATTGCGAACACTGAAAACCAGTGGCCTTATTCTCCAGTTGAAACGAGGGAATCAGGCATATTTCTCAGTGTTCCTGAGGAGAGGCACAATAAATGTTGCTGTGTACTCTTCTATTAGAGAGAGTTCTACATTCATCGCAGATGGGGAGAAGGTACTGATTACTATTGATGTCCACGGAGGATTTTTATACTTCAATCACGCAGAAATACTTTTTAGACCTGCGACTTTTCCTGAGCTTGAAGTGCAGGCAGGAGATGTGGTATATCTTGGTGGACTTCCTGAAGAAGATGATACAATACCTTGGGGTGGCCATTTCAAAGGTTGCCTACAGGACGTACGTCTGGATGACACTCAGCTCTACATGAGcttaaacaaaataatcaaaatacaTGAACAACCAAGCTACTTagcagatatttcacataacTTGCTGGAGCACTGTGTCAGTGACGAAGTATGTAAGGGGACACCGTGCTTGAACGGAGGAGAATGCATGATTAAGTGGAATGACTTCATCTGTTTCTGTCCACTAAACTACACTGGAAAGACATGTGACATTCAAGTGTGGTGTGCCAGCAATCCATGTGTTATGGGTAGCCAGTGTGTGGACCTGCCTGATGGATATGAGTGCTTGGCCAATGCCACATTTGAAAACAATGCTTTGACGTACAGTGCCAGCGGCACGTTAGCTGCTCCTGTGACATTGGTTTCTGTGAAACTACGGACTCGTACAGAGAATGGCACACTTCTTCGTACTTCCAATGGCCTAGAGTTTTTTTACATGGGCCTCCTGAATTCCTTCATACTGGTCAAGATCCGTAATAGCAAAACCCAGGAGGTGCTGGCTTTCTACAGTGAGGTGGAGGTTTCAGATGGAGAATGGCACCATGTGGAGCTCAGGAAGACAGGTTCACACTATGCTTTGTCTCTTTGGAACCTCACTGTCGATGGGCAAGTGGCAGGTTTGAGCCAAGCATTTGGTGACAactttgatttctttaaccATTCTACCGTGTGGTTGGCGGAGAATTTCACCGGCTGTCTTGGTGAAGTCAGGATAGGGGGAGTGTATCTGCCACTGGTGGGGGGCATTCATGAAGAAGCACCTCAGTTTTCACAATTTATCCATTATGGCAGCACAAAGGAGCCACTAATTGGGTGTAGTGGTGCACCCTTGTGTCTCCTGCATCCTTGTTTGAATAACGGCTCATGCCAAGATCTCTTTAATCACTATAGCtgtgactgtgccccaggctgGCAGGGTGAAAACTGCCAGGATGATGTCAATGAGTGCATCTCTGGGCCTTGTGTCCATGGGACCTGCAGGAACCTTCCTGGGGAATACCTGTGCCAGTGTGCCCAGGGCTACAGGGGAAGGAACTGTGATGAGGATGTGGATGAGTGCCAAGTGCTGCGTTGTGAGAACACAGGGTCCTGTGTGAACACTGTGGGTGGATACACTTGCATCTGTCCACCAGCACACAGTGGTCCACTCTGCCAATGGAGCTTCCCTCCACTTCAGTGTGGAGTAGATGTGCAGTGTACTAATGGAGGAGTCTGTATGGATGGACCCTGGGGGGCCAACTGTACCTGCAATCTTGGATACGCAGGAGAGAGATGTGAAATGGACATAGATGAGTGTGAGTCCAACCCTTGTCTCAATGGAGCCACCTGCATAGATCAGCAGAATCAATACCTTTGTGAGTGCTTGCCAGGTTTCAGTGGAGATAACTGCGAGGCTCCTAGGCAGCAGAAGAAGGAGAGCATCCCCTGGCTTGTAGTGGCAATCCCACTGATATGTTTGGCTGCTTTGCTGGTCGTGGCAGGTTTGGGTTGCATGATGCTCACTGCACGTAGGAAACGGCAATCTGAAGGCACCTACAGCCCCAGCCAACAAGAGGTGGCAGGAGCTCGTCTCGAGATGGGCAGCGTACTTAAAGTGCCTCCTGAGGAAAGGCTGATTTAACCTTTAACTTTAATTATAACAAAAATGTACTTAAAGGATTAACCTAATATGTAGTTCCCTTGATGCCAAGCAGTATTTGAAATCACTGTGATCATCACTAGGCCTTGTGACAAAAAACACCTAGGGGGTGTGTCAATATATGAGGTAAAATAGCACAAGCACTCTGAGTAAGTAACTGAAATCCTAAgacttttttaatattcatactGTGTGGCATAGTTGCTAAAACATTTTACCAAAATTTTACCTATAACTACAAAAAGAATGCAGTTTCAAGACTCATTGATGCGTGATATgcatatattttgtaaaataattgtaaCTCCTCCTTTTTGTGCAtttgatttgcatttttaaagattttttcaggtatataaaatatagattatgtgttcaaatttttgtattttttttcatttaactcAAAATCTCAATgcagaatgtatttttatattattcatttgGTGAAAGCCAGCTACAGCATTCCACTGCCACATCGTTTCTTTGCTTTAATCCACACTGTAATATCTGTGAATAGTGGTTTACATTGTACTCATATCCTGAACAGCATAtactagctaacattacataaatttttttttattatttagtattttttagaattatttaatAGTATAGTTTCTTTTCTCACCACCTTAGTCTAAAGACACTGTAAATATtgggtttttttaaacactggactatttttttctatttataatgTCACATTCACTGGAAATCTTTCGGAAATACACAATCTATAATGAAAATGTGATTATTGTGCCTGTATATTTTGATTGTTATTATCTTTCTTGTTTAGTATGCAATGGACATTACAGTGGATATGTAAATTATATCTATTAATCTA

Function

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0003094 glomerular filtration biological_process
GO:0048793 pronephros development biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K16681 CRB; protein crumbs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158788 lncRNA upstream 12737 17386264 ~ 17398372 (+) False LOC117597787
XR_004578546.1 lncRNA upstream 20381 17386300 ~ 17390728 (+) True LOC117597787
XR_004578638.1 lncRNA upstream 32873 17376303 ~ 17378236 (+) True LOC117597877
TU158714 lncRNA upstream 55449 17298168 ~ 17355660 (+) True G134344
XR_004578574.1 lncRNA upstream 80446 17312899 ~ 17330663 (+) True LOC117597810
TU158861 lncRNA downstream 161791 17610853 ~ 17611055 (+) True G134466
XR_003403395.2 lncRNA downstream 250341 17699403 ~ 17714824 (+) True LOC113533142
XR_003403396.2 lncRNA downstream 250341 17699403 ~ 17714824 (+) False LOC113533142
TU158921 lncRNA downstream 287325 17736387 ~ 17736771 (+) True G134516
TU158926 lncRNA downstream 289888 17738950 ~ 17739247 (+) True G134521
XM_026925931.2 mRNA upstream 58519 17349316 ~ 17352590 (+) True seta
XM_034306703.1 mRNA upstream 329159 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA upstream 329159 17061061 ~ 17081950 (+) False LOC117597835
XM_034306615.1 mRNA upstream 360829 17037821 ~ 17050280 (+) True LOC113524948
XM_026910769.2 mRNA upstream 543934 16859976 ~ 16867175 (+) False gucd1
XM_026925239.2 mRNA downstream 162324 17611386 ~ 17621646 (+) True lhx2b
XM_026925790.2 mRNA downstream 456742 17905804 ~ 17916639 (+) True enkd1
XM_026925789.2 mRNA downstream 456744 17905806 ~ 17916639 (+) False enkd1
XM_026925792.2 mRNA downstream 479362 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA downstream 479759 17928821 ~ 17939695 (+) True polb
TU158711 other upstream 114226 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 675774 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 810524 16580453 ~ 16600585 (+) False mtmr3
TU158254 other upstream 816706 16580453 ~ 16594403 (+) False mtmr3
XR_003403426.2 other downstream 581913 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 987148 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2038425 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2773353 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2773353 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile