RNA id: XM_026925239.2


Basic Information

Item Value
RNA id XM_026925239.2
length 3051
RNA type mRNA
GC content 0.45
exon number 5
gene id lhx2b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17611386 ~ 17621646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAGGGGGCTGGcaaaacacagccataatagaCACACATACGCATACCCCAAAAGTGCACTCAACTCCTCCTCGTCAGTTACTTACATTTGGCTGCGACTACAGGAGGGACACATCGCTTGCGAATAACAACAGCTCCTTTTCAGAGAATATGTGGCTATAAACAAGCACTTGGCATTAAAGTAGCCATCGTTAAAGGCGTCGATATGTTAGTGTTTATCATTCACTGGAGCCTTCTGTCGTGCTGAAGTTGGACATCTTTTGAAATGACAAAGCGCCGCAGAGGAAGCGAAAACACGACGAAGATGCAAACACTAGTAAAAGTCGAAAGGTTGAAATTGTAGTCGAAATTTCCACACTATTCAGGATTAATTTTTATTCGGcgatgagaaaaaaatggattttcGGTGAAGTACGCCTGCAACCTCCTCCATCCTAAGAACCGAAAAGAAAAACCGTCTTGTTCAGTTTAACAGTGTGATGACACACGTCTGTCCAACTGAAAATTGCCCACGAAACACTTCAGACGAGCATTACAAAAGTGGCCTCCGTTGTGGTACGTGCTCAAAGCTCCGGAATGCACCGACATCCGAGTGTGTGCGTTCTGTGTGCCGTTGATGTGTGTGTCTAGGTCCATTTACCTACACTGGATAAAAGGCAGTAACGGTAAAAGAACAGCAAAGTATTAGCTTCTGATTAGGAGTCCTATAACGGCGCGTTCATGAACGAAGTCATATGAACCGCAAAGGGCCAGGTCTGTATCTTACTGAAGCAAACACGTGCTTTTCGCTCCCGTCCGCGATGCTTTTCCACGGCCTGCCCGGAGGCGACATTCACGGCGTGATGGAAGAAATTGAGCGCAGAGGCAAGAGCGACTCGGCTGCTATCAGCTCGGCAATAGATATGGGCGAAAGAGAAACGAGCATGCCGTCGATGAGCGGTGAGCGTGTGGCTCTGTGTGCTGGCTGCGGGGGGAAAATATCCGACCGCTATTACTTGCTTGCCGTAGACAAGCAGTGGCACATGCGCTGTCTGAAGTGCTGCGAGTGCAAACTCAACCTGGAGTCCGAGCTCACCTGCTTCAGTAAGGATGGAAGCATCTACTGCAAGGAAGACTATTACAGAAGGTTTTCGGTGCAGAGGTGCGCGCGCTGCCATCTCGGGATTTCAGCCTCGGAAATGGTAATGCGAGCTCGGGACTTGGTTTACCACTTAAACTGTTTCACGTGCACGACGTGCAACAAAATGCTGACCACTGGCGACCATTTCGGCATGAAGGACAGTCTCGTGTACTGCCGTTTACACTTCGAGACGCTCGTGCAGGGGGAGTACGGACACTTCAATCACACAGACGTGGCTCCAAGTAAAGCGCTGGGTACAGCGGGGGCGCTCGCGCTCTCCTACTACAATGGAGTTGGCAGCGTACAGAAAGGACGCCCGAGGAAAAGGAAAAGCCCCGGGCCCGGAGCAGATTTGGCCGCTTATAACGCAGcacTAAGCTGCAATGAAAATGATGGGGATCCCATGGACAGAGAATCTCAGTACAGTTCTGGTCAGAAGACCAAGAGAATGCGAACTTCCTTCAAGCACCATCAGCTGAGAACCATGAAGTCCTACTTTGCCATCAACCACAATCCTGATGCCAAGGATTTGAAACAGCTGGCACAGAAAACAGGTCTTACAAAGCGTGTACTTCAGGTCTGGTTCCAGAATGCCAGGGCCAAATTCCGACGAAATCTTCTGCGTCAGGAGAACAGTGGAGTGGACAAGGCTTCAGATGGGTCAACTCTAGCTGGTGGAACCCCATCTGGTCCTGCATCAGAAATTTCGAATGCCTCTATGAGCCCGTCTAGCACTCCAACCACACTCACAGACCTCACTAACCCTACCATGCCCACCGTCACCTCTGTACTGACCTCTGTGCCAGGCACCTTGGATGTGCGTGAATGCCGGAGTCCTTCTCAGACCACACTTACCAGTCTCTTCTGATGCCTGCCACTCAGCGATAATCACCACTGACTCTTATAGCTGTGTAATTACAGAGCACATCCTGTTTTCTGATCTAAGTTGTGAAGGAATCCGTTACTGGTTCACTTTACTTGGACACCACATAACGTCATAACACCATTCCTAGCCCCGATGCTTACAGGTGCTGTTTGTAAAATGGTGTGATAATGCAGCTGTGATTAGTGGCACAAAACTTTGTAACTGTACAAGTCACAGATGTTCCAGCCTGGGCATTGTTTTCAATAGACCCAACAAAATGCAAACTTATGGTCATGCCAGCTAGAACCAGAGACAATTAAAAGACTGTTAAATTACACAAAGTAGGgggaaagacaaaaacaaacttgAAATtggttaaaaagtaaaaagcttTTGTTTGATCTTGAGCCTCTTTCAGAGTATTGCATAGAGGCAAGCATGCCTCAGTGAAAGGATATTGacgtttttgttgttgtttttggtctTTGATGGAATTGAAGAgaaattatttgaatttttatttccttcttatATAACTATGTTTACAGCACAAGACTGAGGATAAAAGTGCTCACATCATATGGGAATTGACTTCTTTCTTCAGccttttatttatgtaactgCACACAGGGGTCAATGTGAGGAAAATGGattataatatgaataattttgagATGAAATTCATAAACAGTAAAATCCTGACTGTCACGTGCCTTATGCTGCATTTTAGTAACCCTATACAAAGTCCATTTCTCACTgctaaaaatgaattgaatttgaatatgTGTATTTTATCCATTGAGAGGACAAGGGTTGGTAGCTCTGCATAAACATGAGCATTAAATGCAGGTACATaccctctctttccttctctccctctctccctcccttttgctctctctcttgccttttatctctttctcttctaagagaaacttaaaaaaaatgaaatatcatgTAAATGATCTTAACTCAACATCTTACCTCACTAAGAATCCACTGGAAATAATAGAACAGCAGCTAAAACCTTAATACACACTTCatcttagcaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0021537 telencephalon development biological_process
GO:0021554 optic nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043010 camera-type eye development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0071632 optomotor response biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09373 LHX2_9; LIM homeobox protein 2/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158861 lncRNA upstream 331 17610853 ~ 17611055 (+) True G134466
TU158788 lncRNA upstream 213014 17386264 ~ 17398372 (+) False LOC117597787
XR_004578546.1 lncRNA upstream 220658 17386300 ~ 17390728 (+) True LOC117597787
XR_004578638.1 lncRNA upstream 233150 17376303 ~ 17378236 (+) True LOC117597877
TU158714 lncRNA upstream 255726 17298168 ~ 17355660 (+) True G134344
XR_003403395.2 lncRNA downstream 77757 17699403 ~ 17714824 (+) True LOC113533142
XR_003403396.2 lncRNA downstream 77757 17699403 ~ 17714824 (+) False LOC113533142
TU158921 lncRNA downstream 114741 17736387 ~ 17736771 (+) True G134516
TU158926 lncRNA downstream 117304 17738950 ~ 17739247 (+) True G134521
XR_004578603.1 lncRNA downstream 235480 17857126 ~ 17861186 (+) True LOC117597839
XM_026925238.2 mRNA upstream 162324 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA upstream 162324 17411109 ~ 17449062 (+) True crb2b
XM_026925931.2 mRNA upstream 258796 17349316 ~ 17352590 (+) True seta
XM_034306703.1 mRNA upstream 529436 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA upstream 529436 17061061 ~ 17081950 (+) False LOC117597835
XM_026925790.2 mRNA downstream 284158 17905804 ~ 17916639 (+) True enkd1
XM_026925789.2 mRNA downstream 284160 17905806 ~ 17916639 (+) False enkd1
XM_026925792.2 mRNA downstream 306778 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA downstream 307175 17928821 ~ 17939695 (+) True polb
XM_026925794.2 mRNA downstream 409329 18030975 ~ 18048321 (+) False vdac3
TU158711 other upstream 314503 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 876051 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1010801 16580453 ~ 16600585 (+) False mtmr3
TU158254 other upstream 1016983 16580453 ~ 16594403 (+) False mtmr3
XR_003403426.2 other downstream 409329 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 814564 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1865841 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2600769 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2600769 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile