RNA id: XM_026925262.2


Basic Information

Item Value
RNA id XM_026925262.2
length 5606
RNA type mRNA
GC content 0.45
exon number 6
gene id rab11fip1a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24693337 ~ 24712086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGCTAGTAGCTTCGGTGGTGATTAGCGGTTGTGCTAGCTCCCGACATCACAACATTGGAAGGTTGCGAGAAAAAGTTTGCGACGGAGTTATAAAGGGCAGTTTAGCAGATTTTCGGGCAGTCAAGGAGAACAAAACGGCGCAGAAAGGCGGAATTAAAGAAGCGTCCATATCAGCTGGGGGCGTggcttgtgtgcgtgtgtggggaTATAGCAACCGCCACAGGAACCATGTAAGAAGTTTGTGAGGACGCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCGCTGTCTGAAACAGGAGCCGCTGTCTGAAGCAGGAGCCGCTGTCTGAAACAGGAGCCGCTGTCTGAAGAGCGAGGGAAAAAGTCAGCCGTGGAGTGTTGGATACAGTGTCTGAGAGCGATACACGTTGAGTAGTGAGCTAAGCTACTATGTATTGAGGCGTAGGCAGGGTTTAGGAGGTGTTGGTGTAGCATTGGGGTGGAGGATGTCTCTCGCCGAGCAGAGCCAGCAGTGGTACCCGACCAGCGTCCAGGTGACGGTGCTTCAGGCGCGCAAGCTGCGGCTCAAAGGCAAGAATGGTACGAATGACGCGTACGCCATCATCCAGGTGGCCAAGGACAAGTTTTCCACCGCGGTGGCGGAGAAGTGCGTGGATCCTGTGTGGAAGGAAGAAGCCAGCTTCGACCTGCCGCTGTTCCACCGCGGGAACGCCGAGCGCTGCACCCTGTACATCGTGGTGATGCACCGCGCCCTGGTGGGCATGGACAAGCTGCTGGGCCAGGCAGTCATCAACCTGCTGGACGTGCACGACAACAAGGCCCGGAAAAACACCGATTGGTACAAGCTGCTGGATAAGAACGGTAAAGCAGACAAGGAGAGAGGCGAGGTTCTCCTGGACATCCAGTTCATGCGGAACAACATGACAGCCAGCATGTTCGATCTCTCCATGCAAGACAAGCCTCGGTCTCGTATCTCCAAGCTCAAAGATAAGGTCCGGGGCAAGAAGAAGGATGGACTCTCTGACTCCGCTTCCGCTATTGTTCCTGCCACAGTTAGTCAGGTCCTGACAGACAGCGAGGGGGAAGAAGAGGGAAGCACAGACTCTCCAAAATTGAAGAAGTCATCTAAATTTAAGTCTCTTTTTGGATCAAAGACAAATCTCCACAGAGGCGTGTCCCAATCCATGTCCACCCTCGGTACGCTGCCTGAGAAGAACAGCTCGCTGAGCAGCAGCCGATCCTCAGGCCTCAATGAAGAATCTGCTGAAGGCAAAAACAAGTTTAAGTTTTTGGGCCACAAGAGAAACAGTAGCACTGACAGCAAAATATCTCTAGGCCCTTTCACCCTGCTGAATCGCTCCAAACAGAGCACTCCTGAACAGAGCAACCTGTGTATCAATGGCAGTCATGTGTATGCTGAGGATCAAGAGACCAAGCCGAATTCTGGTTCCTCCCTCAGCCTGAGTGGCTCTGCAAAAGGTTCCATAGAAGACCTGCGGAAATACCACGAACGAAAACCATCTGCTGGTTCCACTGACTCGTTCAAGGGCCTCAGTATTCCTAGTTACAAGCCTGACTCAACAGACAGGGAATTCCAAGTCCAACAACGCCCTCAAGAGGATGAAGAGAAGAAGCACAAGAAGACAGAAGGACGCCTGCAGGAGCTTTTGGATGAgcaggagagaaagaggcagcAAGAGCAAgatgagagatggagaaaacTGGAGGAAGATGAAAGAAAGATGCAGCAGGAACGAGAGAGGAAgcggcaggaggaggaggagcagcaaaGAAGGAAGCGTGAAGAAGAGGCAAGGAAAGCAGAGGAACAGAAACGCCAAGAGGAGTCCAGAGTGACTGAGCGGCTCACTTCTCTTTTCGGCCTAGGGCGGAAGAAAGAGGAGCAAATTTCTCCAGCAGTGGAGAGTCCTAAACAACTGGAAGTACCAGCCTCCACAAACCCGTTTGAGGAAATTCCACTTGGCTCAGACAGCCCAAATCCTTTCCTAGAGGAGAAGCCAGCAGAACCACAGAAAGAGGTGCGAACTGCCTTCACTCCAATGCCACCTTCCAGCGGCTTTCCAGCTCGTACAGCCAAGGTTTCTGCAGTCAAgccaagATTGACTCTCAGTCAGAAGACTGAAACAGATAATACTGATTCCCTTGCCTCCCCTGTCCCCTCAGACATCCAGAACTCTGTTCCTGCTTCTACTTTTTCCCCTGAAGCATCACCTTCTAGTGATTCTTTTGAGTCTTTTGATATGTTTtctaacctccactcttctatgGCACCTCCTAAACCCCAGAGAACCTTTTCAGACTCGTCAAGAGGCAGCATGGAGAACCGTTCAGGAGTTGATAATGCCACTAACTTGTCTGAGAAAAAGTACAGAGCCGCACAGTCACCCAGCTATCCTGGGGATCCattcaaaaatgaaaagcacCATCTAAAAAATGGCGTACAGGTTAGTCCACCAACCTCGGAGAAAACTCAAAAACCTTCACTTCCTCCTCCTGACTATGAAGCTCTTTTTCCCAAGAAGAGACATGGTGTAATGACTGACACCCGTTGGGAACACATTATTGCTGAAGTGAACCAGAGAAAGATGAATTTTCAGGATGGTGAAAAAGAAATGAGCGTAGATGGTCCTGATGAGCCCATCTCAAACAAATCTTCAATTTTAAAGGAAAGGAATACATCAAGCCTCAACCAGCATCACAGGGATTATCAGGCGGTGTCCTCTGCCCCCACAAAGGGAATGGAGCCTAAGCCGGCTCTAATTCCACCCAAACCAGCTAGTTTGgcaacaacaaaacagcagcGTGAGGCTAATTCTGAGCAAGGCCATACCCATAAACAATTATATTCTGTACATGGTGAAAAGACCAAAACAGATTTGGGAAGAAACCTGGGACCATCAGGCCAGAGTCAGCAAGACACTCGGATGAATGTAAAGGGAGCTTCAAACCCCATTCCTGACCCCACACTTGGTCAAATCTCAGAGCCAAAAATGGAAAAACCAACACCAACAGCCAGGAGTATAAAAAAGCCAACTTCAAGCAGTGATGTTGATACTACAGGGTTGCCTCTAGCCAAACATAGGAAAGGAGCTCCAAGTAAAGAACCTGTCATACAGGTTCAACCAGAGCAAAGTATGCTCGCTTTTACATCCTCAGCAAGTTCTCAAgtggatggaaaaaaagaaggttCCAAGACAGCTAAGAGTTTGTGGGAGAATTTAGGCTTTGCGGAAGGAAAGCCTACCCCTGTAAATAAAACTGCTAAAACGGTTAACATACCAAAAGAACAACCATTTACAAATGTCACAAGTGCtcctgagaaaaaaatgactgaagtTGACCCTTTCCCAAGTGATAAACTAATCTCTCAAGATCCCTGGGCTTTACCACAACAGACCATGGATCAAGATGACTTTTTCACTGGTGGTccgaaggaaggaaaaaagccTGAAGATCAGAGATTATCCTCAGATGACTTTGATAACATATTTGGATCTGGTGCATCTAAAAATGAAATGGATCCTTTCTTTGTGCCCAAAGATAAAGCAAATATTTTCTTTGAATCTGTGGCCTCTAAAAATGAAACAGATTTGAAAAAATCACATAACTCAAGCCCTTCCTCCCAGAAGGTATactcacaaaagaaaaaactagcACCTCCACCCCCTGAGAAGCCTGTAATGGGGAAAGATACCATGGACAAACCAGTCCTTCAAGAGGCTGATGATGTTGAATTAACTGTTACTAGTCTTGCTGAACCAAAGGGTGGTGAAACTACAGAAGCCACATCAAAAGCTAATTTGGATCCATTTACATCCCTGTCTTCAGCTATTCCAGAACTCCTGTCTGGAAGTGCATCTGGGGGCAAAAGCACACTCTGTGCCTGGGTATCACCCTCTGAGGTTCAGTCAGGCCCTTCACAAAGCAGTGGAGGTGGTGTGGTATTTACCTCTCGCAGACCACACCCAGTGAAACCGATGAGTCCCTATGAAAGCCAGTCTCCTGGTAGTATTTCCTCGGGAAAAGATTTGAAGATTCCAACGATCCGAGAAGTGGCTGAAAAATCAAAGTCTGTAGAGTGTGGCCCATACACCCAGCTCACTCAGGAAGAGTTGATCACCCTTGTGGTGAAGCAGCAAACTGAGCTATCCAAAAAGGATGAGAAGATTCTTGAGCTGGAAGATTACATCGATAATCTGCTCGTGCGTGTCATCGACGAAAAACCCAGCATCCTGTTGGCCCTAAACGCCAAGGTTTAGGGGAAGAAGTTCTTCACTATGACACTATGAGGTGGAAGATAACTGAACCTACTACACCTACACCACAGTGTAACATAATGTTTTGATGAGATGTGCTTCCTAGGAACCAAACCTTCCAAAATGATAACTTTTGTTATAGACACAGGCTATACTCTACGGTTTcacattcaggttttttttttagcttgattTGGTTGAGCTGCATCAGACAGGTGAAAGAAAGTGTTCAATGAGTGAGATAGGACATCTGTTGCTCTGGACTAATATCTGTTAAGTCTCAAGATGAAACCAAGGAAGGTCTTTTTTTCACTATTCATAAAACGGTGACATGAAGGATTAACAGTTTTATGCTGGGATTATTTCttaatgtgttgttttatgtgttATGTCTACAAAGTGTGTCTTCAATAATGGACAGATGAAATGTGTTGAATCATTGTAGCATTGTATTTATCTGTGGAATGATTCGAATTTTTTGTCACTGaatgatagatttttttttcttaacactGAACTACATTTGACTGGTGTCTGGGTTGTTTTAATGTAACAGTGGTGTCACAGGTACATTTTACTATCTGCATTTCTGTGTCTGATATTTGTATCTGTTGCATTTTGTTGCCCCATACCTCACACCATTAACACTAGATCTTCCCATGTTATCTGGCTTTTGCCTGACCCCTGCTATAGGTTATACTCATTCTTGTTGGCTGAAGATTAGAATTAGTTCAGACCTGCCCAAAATGTGCACAATGTTGTTCCACAGTGTCTTCATTCATGCTTTAAGATATTATGGcattaattgttatttttcttgGCTGCTGTCTTCAAACTTTAAATGCTCATTtaagaaaagacatttttaatgatctctgctgttaaaatatttattttcctaacTATATTTTGAAGAAAATTGCTTTGTGTACTAATATGGCAACTCTCAGGCCACATTCTGGTACTATGACATCATTACTATATAACACTATTTCTATGTTTATCAGTGTGACCTAATCATGAGTCAGCTATAGTGGTGCTTCACCACTTCCTGATTGATACTTTAAGATCAACTGCAATAAGACtatcatttattttgtatacCTGTGCCTTCTTGTGTCCTTTATGCATAACAATTTCTTTCTACATTCcaatgataaaatatattttggataAATTATGTATATTCAATAGATAATTTTTTATGTGTATTGCATTGAGACAATagttaatgtacatttattctGCTATATGAAAGTGAATAAAACTATTTATACCACAGG

Function

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163649 lncRNA upstream 45886 24646779 ~ 24647451 (+) True G138578
TU163604 lncRNA upstream 190966 24502086 ~ 24502371 (+) True G138535
TU163307 lncRNA upstream 329576 24362949 ~ 24363761 (+) True G138280
TU163261 lncRNA upstream 568768 24121610 ~ 24124569 (+) True G138239
TU163191 lncRNA upstream 703240 23989898 ~ 23990097 (+) True G138176
TU163669 lncRNA downstream 18901 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 39954 24752040 ~ 24754872 (+) False LOC113533328
XR_004578578.1 lncRNA downstream 40455 24752541 ~ 24783425 (+) False LOC113533328
XR_004578577.1 lncRNA downstream 40583 24752669 ~ 24754872 (+) False LOC113533328
XR_003403403.2 lncRNA downstream 135982 24848068 ~ 24849544 (+) True LOC113533216
XM_026925600.2 mRNA upstream 1897 24632224 ~ 24691440 (+) True adgra2
XM_034306727.1 mRNA upstream 69181 24561931 ~ 24624156 (+) True pdlim2
XM_034306723.1 mRNA upstream 69181 24562377 ~ 24624156 (+) False pdlim2
XM_034306725.1 mRNA upstream 69181 24568287 ~ 24624156 (+) False pdlim2
XM_034306724.1 mRNA upstream 69181 24568447 ~ 24624156 (+) False pdlim2
XM_026925769.2 mRNA downstream 166700 24878786 ~ 24925439 (+) True vps13a
XM_026925772.2 mRNA downstream 166700 24878786 ~ 24925439 (+) False vps13a
XM_026925771.2 mRNA downstream 166700 24878786 ~ 24925439 (+) False vps13a
XM_026925775.2 mRNA downstream 166700 24878786 ~ 24925439 (+) False vps13a
XM_026925774.2 mRNA downstream 166700 24878786 ~ 24921273 (+) False vps13a
TU163200 other upstream 679611 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 679611 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 936223 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1169361 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1433884 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 559523 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1197489 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1204004 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1742386 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1742536 26454622 ~ 26457276 (+) False car15

Expression Profile