RNA id: XM_026925267.2


Basic Information

Item Value
RNA id XM_026925267.2
length 1826
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113533263
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23490838 ~ 23495877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGCCTGAAGGCGGAAGTCCGAGCATCAACAACCCCTAcgtcagtgatttttttttttaggagacagACGTGAACGTTGTTGAGgttaatttgtgtgttttaaacagaaacCTCTAGCTGCCATGTCTTTGTTTGGGAAGTTGTTCGGGAGCGGGGGGAAAGGGGACAAAGCCCCGAGTCCTCAGGATGCGATCCAGAAACTCCGCGAGACGGAGGAGATGTTGTCGAAGAAGCAGGAATTTTTGGAAAAGAAGATTGAGGCGGAACTGCTAACAGCGAAGAAGAACGGCACGAAAAACAAACGAGCTGCCCTCCAGGCCCTGAAGAGGAAGAAGCGTTATGAAAAGCAGCTGGCTCAGATCGACGGCACTCTGTCCACCATTGAGTATCAGCGAGACGCTTTGGAGAACGCCAACACTAACACAGAGGTGCTCAAGAACATGGGCCTCGCCGCCAAGGCCATGAAGAACGCTCACCAGAACATGGATATAGACAAAGTGGACGAGCTCATGCAGGACATCACAGAACAGCAGGAGCTGGCACAGGAGATCTCCGATGCTATTTCAAAACCAGTCGGCTTTGGAGAAGAGTTTGACGAGGATGAATTGCTCGCTGAACTGGAGGAGTTGGAACAGGAGGAATTGGACAATACCCTGCTGGAAATTGGTGGCCCAGAGAATGTCTCACTGCCCAGCGTGCCTTCAACCTCATTACCTTCCCAACCAGCTAAGAATAGAAAggaagaggatgaagatgatATGGAGGAGCTGAAAGCTTGGGCAATGTGAACCAAGCCCAAACATCCGGACTGTCTAATCACTCGCTGTGGTGGACTGATGTTCAGAGTCGACTCGAACACCTTCGGAGAGTTAACGTTGCAAAAACAATTGTCTAGGAAATTGTAGCTCCAATTAATGGCTTAGGtccagaaacaaaacaaacaaacaaacaaaaaaaactgtccatAGGGATGTAAAGGAGGctatgaaagcaaaacaaacaatcaGATGAAATTTTATTCGTGAAACAATTTGGCTAAGGTTTGTTTATGGATATTTTGATGTTCTTCTCCTATTGTTGCTCATTTTCCCTTTTGAAATTGGAATGTAATCATACTGAACCCACTTAGACATCTACCTCTATCTGTTTATTAAACACCTACAGCAAGTGGGATTCATGTCATCCCCATAGTCTGTTTGGTAAGTATCAGGATTACGCCAATCCACTCATAGCTTTGTGTTTTCATGGTGATGACATCACTTGTGTATATACAAGCATCGCGTCTTTTGCATGCTTGATTTGAGAGCCTCCATTTTAAAGCATCTCCACTGACTGTTATGATACAGGGAATAGTTTTGGGTCTGATAATATTCTAAGGTTGATCTCAAAGTGCTTTTGTTTTAGAAGCTTTATTTAAACATCCAGAGTtgttttgatatatatatattttttttatatttcattgaTCATAGATTCTTACatcaaaaaaagatttaaaaaatgcatcacAAATAGTTACAGCCCACAATTTCTTCACTGACATCTCAACAAAGTGCTGTATCTTACCTGAAACTATCCTGCTGAAATCTCAAAGCACGTCAATCTGATGTATCACTTTTCATTAGGGTGGAAGGGTtataaagttggaagcaaacTCTAAAgctaatttgtttatttgaaaaGATCCCTAGGAATACATGGACTTACTATATCTTTTGTAAAGAACCTGAAATGTAACAGCAAGGTGTGTCATGTGTACATTTGTATGTTTGAGATTATTCAGATAAGACTTTTATTTGAGAGATCATTAAAATGTTCGATTCTT

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162558 lncRNA upstream 228847 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 230141 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 233440 23248597 ~ 23257398 (+) False tprg1l
TU162543 lncRNA upstream 331331 23095798 ~ 23159507 (+) True G137650
TU163000 lncRNA downstream 251586 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 394553 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 494021 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 625733 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 867072 24362949 ~ 24363761 (+) True G138280
XM_026925371.2 mRNA upstream 5972 23478294 ~ 23484866 (+) True LOC113533314
XM_034306900.1 mRNA upstream 29412 23437236 ~ 23461426 (+) True LOC113533316
XM_034306591.1 mRNA upstream 74475 23407805 ~ 23416363 (+) False LOC113533315
XM_026925372.2 mRNA upstream 74475 23407809 ~ 23416363 (+) True LOC113533315
XM_026925374.2 mRNA upstream 86845 23398609 ~ 23403993 (+) True LOC113533317
XM_026925266.2 mRNA downstream 754 23496631 ~ 23503510 (+) True eif2s2
XM_026925124.2 mRNA downstream 9207 23505084 ~ 23509854 (+) True LOC113533186
XM_026925780.2 mRNA downstream 14313 23510190 ~ 23513559 (+) False LOC113533564
XM_034306466.1 mRNA downstream 14318 23510195 ~ 23513559 (+) True LOC113533564
XM_026925106.2 mRNA downstream 18709 23514586 ~ 23524705 (+) True pabpc1l
XR_004578647.1 other upstream 231385 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 1800346 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1800742 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1801100 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1802247 21688520 ~ 21688591 (+) True trnaa-ugc_3
XR_004578528.1 other downstream 18709 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 254540 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 515740 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 515740 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1775732 25271609 ~ 25271680 (+) True trnae-cuc_21

Expression Profile