RNA id: XM_026925298.2


Basic Information

Item Value
RNA id XM_026925298.2
length 3097
RNA type mRNA
GC content 0.46
exon number 10
gene id dcp1a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20898476 ~ 20909749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGCCTTGGTACAACCCGGAGAGAAACATGAATTGGTGGTGTCCTCGGAATTTCTTCCGTGCTGCCGTATGCTAGCGTTCAAGATGGAGTCCGTCAACAAAGCTGGACATCTGATGAGTCTAGCGGCTCTGCAGCAGTATGACCCTTATATTAACAAGCTGCTCGATGTTACCGGGCAGGTAGCGCTGTATAAATTCAACTCAAAAGCAAACGAATGGgaaaaaacTGATATTGAAGGCACCTTATTTGTGTATGCCAGGTCAGCATCACCACATCACGGTTTCACTATCATGAACCGTCTAAGCACGGAGAACCTGGTGGAGCCGATTAACAAAGATCTGGAGTTTCAGCTTCAGGATCCTTTCCTCTTGTACCGGAACGCCAGCTtgGGAATCTACAGTATCTGGTTCTACGACAAGGCCGACTGTCAGCGCATAGCACAGCTGATGGTACAAATAGTGAAGCAGGAGACACTGAGGGCTCAGCAGGCCTCTCCAGATCGAGGCCGAACGAATGGTTGTGTTGAGACGAGACCAATGGATATCCTGGAGCTGCTGAGCAAAGCCAAAGAGGAGTACCACAGGaGTCAGTCTAATGATACCGAGTCGCAGGTAAACACAGACGTCACTCCAGCTCCAGACCCAGTTAAAGTAGAGAGCATGAAGCCCACGGTTATTGCTGCTCAGCAGGAGAAGCAAACACACGGTGTGGTGAAGCAGATCACAGTGGAGGAGTTGTTCGGCAGCTCTTTACCCAAAAACCCAACCCCTCCAGCCGAATCGATTTCTGGCGAGAGTTTCCTGCGTGGAATGAGCTACGGCCCTCCTCCCGTACCCCTGGAGCCCATCCTCACACAGTGTCTGTCAGCCAATCCCCTGCTCCCTCAGCACTCCATCTCTCCTGGGCTAATGGCTCCAAGCGGGGCCGAGAACGTTCCAGCACTTGGCGGGCATCGTGGGCAGACTGGGCCTCAGGCTGCGCCTCAGTATATAAATCCACTCAAAAATGATGGCCACGGGATCCCCAAGCCGACAGCAGTGCCAGGCTTCATGCCCAGCACGTTGGTCACGCCACAAAGTTTCCGAGAACCTACTCCCAAAGCACCAGCAGTTTTCACCAGCAAACCCGCAGCATCTGCACAAACTAAAGAAGCTGGTACTTTTGCACAGCCACAAGCCCCGAATCTTGTCAAACCTATTCCAACCAAGGCGGGGCTAGTTGTGCCAGGGGCGGAGCCGTCATTGCTACTTTCCCCCAGTGTGTTCCAGCAGTCCACTACAAAAGCACCAGAGCTGCCGAGAAATCCTGCTCCTCCGCCATCACCCCCTGCCTCTCTGGGGGCTGGAGAGCTTCCCTCAACAGTGTACAGCAAGGCACAGCTACAAGACGTTCTGATACATTTGATAAAGAACGATGCCCACTTCCTCAGCACAATCCACGAAGCATACATGCAGAGCCTCACCAAAGACCTCAGCAATGTCAAACTATAGCCACTGACCCCAAACTCCCAGACTGAGTGCTCTTTCTGTCAGCCCAGGGGGCTGTATTAGGACAAAACCACCACATACTGGTGCACTGGTTCTCTCACTGTATCTTAGTCACAGAGGGATGAATCCAAAGGCACACATCACTCCTTTCTTTCAGCGCTTCTCTGCAAGAACGCAAGCTTCAGGATGACTACATAGCCATGGTTGCCCCACATCTGAGCCCCGGCTATTCTAAATCATGAGGGGGAACACTTACTTCTTTTGTCTAATCGTTGTCCGTCTCATCCTGTCTGGTCCCTCATTGCCCTGTCTGTTATTCCATCTCTAGCTAATAGTTATGGCTAAGCTTATGAAAGCAGGTGCAatactggcattttttttttttttttaaaccttttgtaacagtcatgtttagggatgcattgataccgttttttgtttttcagattgaGAACATATGTTTTTTGTCAATAACAATACTGATGTTAAAATGAGAAACCTACTTGGTATCAATCAGTGACGTTGTGGAactttttatttagctctatTTATATTGGTTGCTGCCGCAATGAACTCCTCATGCTCAGTTTTATGTTTGAGATGTTATGGTGTTAAAACAATATCTTTAATAGAACGCATCAGCAGCAGACcagagcagtatcagcgagCGTATTGAAATGCACCTTGCTGTGAATTGCACCTTGACTCACAAGCAAAGTACAGACCCTAAGCACAaggtgctcagtgctcgcacaTTTGAAATGCTTTCTGATGCGAGGCAGTTCCTCTACATGTTCCCTTCACTAGTCCACCTCAATAACTGTGTGCGTCCAATTCACAGCACActgcactcatttttaatgctCGCTGACATTGCTCTGCTCACTCGCGTAAGACATTTTATCAGGatacttgtattgtaggaagttGCTGTAGTAGCtcttcttgatattttcacagagcactgATGTATGTCCACATCGCTTTCATTTTGTGCCATCTGTTCATTAGCGTGACAATATACACTAGGCTTACATCACACAGTATGACGTGGTATCGGATGTTGGTATTGGAGCGTGTTTACAAGTAAATGAGGATGTTATCAGACCCATACCCAATACCAGTATCGTATCGCTGCCTCCCGACTAACCATGGCTCTTTCTTATAACTAAAATAATGCCCCACGATTAAGTTTTGAACAGGTACCAGAGGGAAGACCTGCACTTTTTCTTGAAGTAATATTTGGACCCAGGTCTTGAAGTGACATGTGGTAACCTTGATGGATTACACTAGTGCTCATGATGCATTTTAAACTGCAGTAGTGTTACTGCAATAAGCTTTATTTGCACTGGACAATAGGAGTACAACTGCTTATTATATATTGATAAATTAGTTTGAGTATAAATAAGGTGTTATGAGTTATGAAGTACCTTTTGAGTTCTTGGATATGTTGGGCATCTTTCATATTTCAGTCGCCAAATTTACTCTGCAAGTTTAGGATGAGTGTGAGGTTTTGCCGATTTGTGATTTGGGATAGCTTGCTTAATAAGCACAAGAACAAGACTGTCAAGATGAGCAGGTCATTTAAATAAAGTGGATTTGCATAAAC

Function

GO: NA

KEGG:

id description
K12610 DCP1A; mRNA-decapping enzyme 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160256 lncRNA upstream 712930 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 883706 20014522 ~ 20014770 (+) True G135643
TU160219 lncRNA upstream 885709 20012567 ~ 20012767 (+) True G135641
TU160085 lncRNA upstream 892768 20005119 ~ 20005708 (+) True G135524
TU160034 lncRNA upstream 996109 19843945 ~ 19902367 (+) False LOC113533656
TU160652 lncRNA downstream 27374 20937123 ~ 20939070 (+) True G136057
TU160650 lncRNA downstream 37555 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA downstream 46625 20956374 ~ 20965468 (+) True G136056
TU161105 lncRNA downstream 437096 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 451090 21360839 ~ 21361880 (+) True G136433
XM_026925241.2 mRNA upstream 114408 20769050 ~ 20784068 (+) True chdh
XM_026925240.2 mRNA upstream 140895 20748979 ~ 20757581 (+) True actr8
XM_026925562.2 mRNA upstream 150825 20744580 ~ 20747651 (+) False selenok
XM_026925409.2 mRNA upstream 159242 20736260 ~ 20739234 (+) True LOC113533337
XM_026925411.2 mRNA upstream 165272 20704500 ~ 20733204 (+) False parapinopsina
XM_034306267.1 mRNA downstream 7074 20916823 ~ 20933688 (+) True tkta
XM_026925859.2 mRNA downstream 124715 21034464 ~ 21060300 (+) True gabrd
XM_034306372.1 mRNA downstream 166078 21075827 ~ 21185924 (+) True LOC113533118
XM_034306363.1 mRNA downstream 313885 21223634 ~ 21250625 (+) True LOC113533151
XM_034306364.1 mRNA downstream 313885 21223634 ~ 21250625 (+) False LOC113533151
TU160573 other upstream 150620 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 166005 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 456285 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 778375 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 778771 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 779918 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 780276 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 780672 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile