RNA id: XM_034306691.1


Basic Information

Item Value
RNA id XM_034306691.1
length 2058
RNA type mRNA
GC content 0.51
exon number 16
gene id rbm39b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23642841 ~ 23651142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTTGTATACATAAGGTGAACTTATAAACAAGTCTAGCTAGCAAACTACCTCAGATAGCTAGCGTAATTCTGTTGCAGAGTGTgaagaataataacaatatttttgtttatagtttgTGTATTTGGTGTTTAATAATTACAGCTAAGAAAACGTAGATTTACCGGACTTTGAAGAGCCTAAGTGAAGAGGAAACGATAACTAGTTACATAGCTAGCATTATTTGTCTTGTATGTTGCTAGCGAGCTAGTTCGCACCAATACCGCATCGCGACGATTTCTACAGACACAACAGCAAGCGTGCAGGTCTCCAATGGCAGACGACTTTGATATCGAGGCGATGCTTGAAGCGCCTTACAGGAAGACTTGCCTAATGATATCTCATCTCTACTTCCCTGAATACACCTTTGATTccagtgtgaagtgtgaaaaaaGGTGACAGCAAATCCTATAGTGCAAACGGCTATGAAGAGCACAGCAGGAAGAAAAGGCACAGTCGGAGTCGCAGCCCAAGTGCAGAACGCCGCAGGAGTAGGAGCAGAGAGCGCAAGAAGGGCAGAGACAAGCGTAAGAGCCGCAGCCGGGAGAAGAAGAGATCGCGTAGCAAAGAGCGCCGTTCTCGAAGTCATGAACGGCATGGACGTTATCGAGGTCACAGAAGCCCCCACCGCAAACGCTCTCGAAGCAAGAGCCCGTTTAAGAAAGAGAAGAGTCCAATCAGGAAACCTATTGATAATCTTagtgcagaggagagagatgcCCGCACAGTATTCTGCATGCAGCTGGCTGCCAGAATCAGACCCAGAGACCTAGAGGAGTTCTTCTCTGCTGTGGGCAAAGTGCGTGATGTGAGGATGATTTCAGACAGAAACTCTCGCAGATCTAAGGGTATTGCATATGTTGAGTTTGTGGAGGCCACCTCTGTGCCCCTGGCTATTGGACTGACAGGACAGAGGCTGCTGGGAGTGCCAATCATTGTTCAGGCCTCGCAGGCCGAGAAAAACAGAGCAGCAGCGGCAGCAGCAGCCCTTAACCTGCAGAAAGGCAGCGCGGGGCCAATGCGGCTCTATGTGGGCTCCCTGCACTTCAACATCACAGAGGAAATGCTCAGAGGCATATTCGAGCCCTTTGGGAGGATTGAAAGCATCCAGTTGATCATGGACAGCGAGACAGGCAGGTCAAAAGGTTACGGCTTTATATCGTTTGCAGATGCTGAATGTGCAAAGAGGGCCTTAGAGCAGCTGAACGGATTTGAGCTGGCTGGCCGGCCCATGAAGGTGGGTCATGTGACAGAGCGCTCAGACGGCTCATCAGCCAGTTCCTTCTTGGACAACGATGAGCTAGAGAGAACCGGCATCGACTTGGGTACCACGGGCCGCTTGCAGCTGATGGCTCGACTTGCAGAAGgtaCAGGGCTACAGATTCCTGCAGCTGCAAAGCAGGCTCTGCAGATGAGCGGATCCATGCCATTTGGTAACCTTCCTGGAGTGATCCCTGCACCAAGCATGAACCAGGCCATGAACCTCCCCACCCAGCCCCTGGCCACTCACTGCCTACAGCTCTCCAACATGTTCAGCCCACAGTCAGAAAACGAGCCTGGCTGGGATATAGAGATTCAGGATGATGTCATTGAAGAGTGCAATAAACATGGAGGTGTTGTTCACATATATGTAGACAAGAATTCTCCCCAAGgtaatgtgtatgtgaagtGTCCGTCTATCCCGGCCGCCATGGCTGCCGTCAGTGCCCTACATGGACGCTGGTTTGCAGGCAAAATGATCACCGCTGCCTACGTGCCCCTCCCAACCTACCACAACCTGTTCCCTGACTCAGTCACAGCCATCCAGCTGCTGAGACCCACACGCCGGTGATCCACACTCCTGCTGCCCAGTCCAATTCTTctgactctctctgtgtctctgcatATCCCAGAGATGCAGACGTCACCCTGCCCTTTTAAGGACAGCTGCTGTCTGTCCCTGGAGGTCCATAGCACATTGTAGATCTCAGACACACAGTTGCCTGAGGGTGTAGATGAAAGCTGGCTGGtctaggtta

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13091 RBM23_39; RNA-binding protein 23/39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162558 lncRNA upstream 380850 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 382144 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 385443 23248597 ~ 23257398 (+) False tprg1l
TU162543 lncRNA upstream 483334 23095798 ~ 23159507 (+) True G137650
TU163000 lncRNA downstream 96321 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 239288 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 338756 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 470468 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 711807 24362949 ~ 24363761 (+) True G138280
XM_034306881.1 mRNA upstream 2616 23573322 ~ 23640225 (+) False slc12a5b
XM_026925612.2 mRNA upstream 11403 23573322 ~ 23631438 (+) True slc12a5b
XM_026925085.2 mRNA upstream 96183 23534596 ~ 23546658 (+) True eif2d
XM_034306308.1 mRNA upstream 97115 23534596 ~ 23545726 (+) False eif2d
XM_026925106.2 mRNA upstream 118136 23514586 ~ 23524705 (+) True pabpc1l
XM_026925424.2 mRNA downstream 31115 23682257 ~ 23703120 (+) True zgc:162200
XM_034306861.1 mRNA downstream 54926 23706068 ~ 23711315 (+) True si:ch211-218o21.4
XM_026925663.2 mRNA downstream 60500 23711642 ~ 23720857 (+) True renbp
XM_026925053.2 mRNA downstream 215715 23866857 ~ 23877386 (+) True gpkow
XM_026925566.2 mRNA downstream 232009 23883151 ~ 23889055 (+) False timm17b
XR_004578528.1 other upstream 118865 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 383388 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 1952349 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1952745 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1953103 21689667 ~ 21689738 (+) True trnat-cgu_3
TU162995 other downstream 99275 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 360475 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 360475 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1620467 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 2258433 25909575 ~ 25916798 (+) True LOC117597866

Expression Profile