RNA id: XM_026925407.2


Basic Information

Item Value
RNA id XM_026925407.2
length 4928
RNA type mRNA
GC content 0.52
exon number 16
gene id brpf1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21743942 ~ 21766390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCCGCGTTGGCAGATTCGTTTGGTATTTTCGTAAATAAACGGAAATATGTAGGGACGACGAAACTGTTCTGTTTTTAACTATGACTAACTATAACGTGAAACGATCACCACCAAaatttatatacagaaaaatacTTGCGAAAAAATATAAACCTATATAGCAATGTGAAAGTCTCTGCCTAATTCGCAAATCGGGTAGAGTTCAAAACAAGAAGGAAGTAGTCGCAGTTTTATCCTGCTTGTGCGTGGATCACTTTTCATCTTTTATAAATAGTATCCTTCTATAATAAAAAGTGAATTTTATATCATTAGAGAGAGAGTTTTGTCGCTAATTCGCCAGAGGCCATGGTGTTGTAATGGCGAATGTGCCGACACGCGCCCATGGCACCCAGAGTAGCCCCTTTTGTTCGCCATAGTCAGTTCCTGGATTATTCACTTTACAGTTAAATAACCCGCGttgctttttttcttatatttttttcctttttaaaataacagttatTTCAACCACCTTTGACCAGATTCACAGATACACACGGAAGCGACCTGAATGTACATTTCTTTGTGATTATCCTTGGTCGGAAGTGGCGACTGGAGCTCGCGCTGTGCTCGGTGACAAGCGCCTGGAGTAATGTAAGCTGAAATAACGTGCGCCAACAGCATGGGGCTGGACTTTGATGTGAAAACATTCTGCCACAACTTGCGTGCCACCAAGCCACCGTACGAATGCCCGGTCGAGACGTGCCGCAAGGTGTATAAGAGCTACAGTGGTATCGAGTACCACCTGTACCACTACGACCACGACAACCCACCTTCTGCTCAAGGAACGCCGCAGAAGAAGCGCAAGGGTCGCCCAGCTCGTTCCTCACTACCCACGTCAGGAGATGGCTCTGAACTTGGTAACGCCCACACTATGCCTGGGCACGGTGGAATGCCGGGTAGCCCAGCAGATAACTCTGACCACTCACATTCTCCTGGGAGAGACACGATGACCTACGCTCAGGCTCAGCGCATGGTGGAGCTGGAGATCCATGGCAAAGTGCACCGCCTCAGCATCTTTGAGGACCTCGATGTGGTGTCTGAGGAGGACAGTGAAGCTGATGATGGACTAGGCGGGTCCACAACATGCAATGGTGAGAATGGGGTCAGTGAAGGTGGGACCAATGGAAAGGACAGACCTGACACCCCTGCGACAGCCAATGGGGGTAAAGGAGCGGGGGCAACACCCAAAGCAGGCAAGCACAAgagcaaagaaaagaagaaggatGGCATGCATCATCATGGAAATCCACCAGGGCCAGCTGTCAAGCTACCTGAGGCTGTGTTTCGAGAGCTGGACCAAGACAGGCCTGATGCACCACCAAGACCAACATCTTATTACAGGTACATAGATAAATCTGTGGAGGAGCTGGATGAGGAGGTAGAGTATGACATCGATGAGGAAGACTACATCTGGCTGGACATTATGAATGATAAACGGCGTAGCGATGGAGTGACGCCGATCCCTCAGGAGGTGTTTGAATACCTGATGGATCGGTTAGAAAAGGAGTCCTACTTTGAGAGCCACAACAAGGGCGAGCCGAATGCACTGATCGACGAGGACGCTGTGTGCTGCATTTGCAATGACGGCGAGTGCCAGAACAGCAACGTTATCCTGTTCTGCGACATGTGTAACCTGGCCGTGCACCAGGAGTGCTACGGCGTTCCTTACATCCCAGAGGGTCAGTGGCTTTGCCGTCGCTGCCTGCAGTCGCCCTCGCGTGCCGTCGACTGTGCTCTATGCCCTAACAAGGGCGGAGCCTTCAAGCAGACCGATGATGCTCGCTGGGCACAtgttgtgtgtgcattgtgGATACCTGAGGTATGTTTTGCCAACACAGTCTTCCTGGAGCCAATCGACAGCATTGAGCACATCCCGGCGGCACGTTGGAAGCTGACATGCTACATATGTAAGCAGCGTGGGGCTGGCGCGTGTATCCAATGTCACAAGGCCAACTGTTATACGGCTTTCCATGTGACGTGTGCACAGCAAGCCGGGCTCTACATGAAGATGGAGCCTGTGCGCGAGACTGGCGCCAACGGCACCTCGTTCAGTGTGCGCAAGACGGCTTACTGTGACGTTCACACGCCACCTGGCACGGCCCGTCCGCTGGGGGGCGGAACCGGGAGTGGCTCCTCTCTCAGTGAGGCAGAGGACGAAGACGAGGAGGACGGTGGTGGAGTCGGAGAGGAGCGGGCCAAAAGGGCAAAGGCCAAATCAAGACGGAAGCTAAAGAGGGCAAGGAAGATCCTAGCAGAGAAGAGGGCGGCTGCACCTGTGGTGTCTGTGCCATGCATACCACCACACAGGCTGAGCAAGATCACGGCCAATCTGACAGTACCCAGGAAGAGTCAGTTCATGCAGAGGCTGCATGCCTATTGGACCCTGAAGAGACAGAGCCGCAACGGCGTCCCTCTGCTGCGTCGCCTTCAGACACACCTACAGTCCCAGCGCAATGTCGAGCCTGTTCCTTCTATAACCACGGATGGCGAGGAGAAGCACACAGCGCTGAAAGAACAGCTGAAAGCATGGCAGAGACTCAGGCATGACCTGGAGAGAGCCAGACTCCTGGTGGAGCTCATCCgcaagagagagaaactcaAGAGGGAGGCGCTTAAGATTCAGCAGTTAGCCTTGGAAATGCAGCTGACGCCGTTCCTGGCGTTGTTGAGGAGTACACTGGAACAGCTGCAAGAGCGAGACACCAACAATTTCTTCACTGAGCCTGTGCCACTGAATgaggtCCCCGACTACCTGGATCACATTGAGCGGCCCATGGATTTTCAGACCATGTGGACGAGTCTGGAGTCTCATCGCTATCTTAGCTTTGATACGTTCGAGTCCGACTTCCTGCTCATCGTCAACAACTGCCTCAAATACAATGCCAAGGACACTGTGTTCTACCGGGCAGCATTGAGGCTGCGGGAGGCGGGCAGTGGCATCCTGCGCCAGGCTCGGAGACAGGCCGAGCGAATTGGCTATGACTTTGACACAGGCATGCACCTGCCCCGAGAGCCCAGCCCCGAATCCccacgtgagagagagagggagagagaaagagaaaggcagcgggagaaggagagagagcgagagcaggacagggaaagagagaggtcCCCTTCTGTTAATGAAGATGAGCTGCGTCGTTTGCCGCTGGAGGAGCAGTTACGGGTCTTGCAGGCACGTTTCGATGACGTCAGCTCGGGAAAGCACAGCATCGGGCGCTCACGTCGAGCCAAAGCTCTGAGGAAGGAGATGACGGTCATTAAGCGCAAACTAGCGCATCAGCGGGATGGCGGGTCCAGCGGGGGCAACCGAGAATCAGGGGCATCTGGAGAGCGTGGTTCTAATCTTGCACATCATGCTTCAGGAACCACATGTCATGACGAGGGAGGGGAGAGCAGCAGCCAGGAGATTAGCGGAAAAGATATCACCGCTACTGCCTCTACACTGGCATCTGAAGTGGGCCGCCGAACCTCAATCCTCTTCTCCAAAAAGAACCCAAAGGCCACAGGACCTCCGAAGCGTCCAGGCCGCCCCCCTAAAAGACGTGACGCAATACACAACTCTGGAGCGATGAGCTCCAGTCCTGTAGGACCTCCACAGCTCCCTCTGATGACCACAGCACGCCAGCGCAAGAGACCACGAAGCCCTCGCTCCAGTTCCAGCTctgagagtgagagtgacaATGATCACGTGGACCTTGGTCTGCCTAGCAATGGTTTCGATGGCGGCAGTAAGCCTGTGACTGAGAGTTTCCTGGTATACAGGAACGAGCCACGCTATCCCCGCTCCAGCTCTGACTCAGATTCTAcaaccagcagcagcagcagtgccGCCTCTGACAGAacaagTACCACTCCTTCAAAGCAGGGCCGTGGGAAGACTTCATTCTCACGCTCAACATTTCAGGAGGATAGCAGCGAGGAAACCTCTGGAACAGAGAATGACTCCTATTCAGTGGGAGGAGCCAGAGGGGTTTCACACTTGATGCGAGGCCGGAGTAGGTCAGGTTGCTGGATGGGCTCAACGGACTACACCACCTTAGATGCCCTCGATCTCGTATGGGCCAAGTGTCGAGGATACCCCTCTTATCCTGCTCTGattaTCGATCCCAAAATGCCACGGGAGGGTATGTTCCATAGAGGTGTGCCAATCCCTGTTCCCCCTCTGGAAGTGCTCAAGCTGGGGGAGCAGATGACCCAGGAGGCACGGGAGCATCTGTTCCTAGTGCTGTTCTTTGACAACAAGAGGACTTGGCAATGGTTGCCGCGCTCAAAGCTCGTACCGCTGGGTGTGGATCAGGATCTGGATAAGGAGAAGATGCTGGAAGGCAGGAAATCCAACATCAGGAAATCGGTGCAGGTGGCGTATCATCGCGCCATGCAGCACCGTAACAAAGTACAGGGTGATCCCAGCAGCGACACAAGCGAcagtgactgaaacacacacacacatacaagcataCACAAATAATGTTGAGAAAGCATGCATGAACACCTGATATGATTAACTATTTACACGGATGTGACATGCATCACTGATGCACACACAAAGATGGTATGTGTATCTAGGTTTACGCTGATGGATGtcatagacacacacaaacacacaaattccAACACAGTAATCCATCTCTCTGGTGCTAAATAACTTTGGGCATGGTGTTcggtgtgtattgtgttttgtCAAGTCTCTAGGCTGtatgtgtttaaatatataaactggTAGATTTTGTAGAGTCTCTTCTCCacgccaggaaaaaaaaaaaagtgaacggaaacacactcacacacctcacctcacaCTACACTGTTCAGTCTAAACTGGTGAACATGCCTGGACATTGATAGTTTAATGATGGAAATAAGAGTTATCATGAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161153 lncRNA upstream 50240 21674858 ~ 21693702 (+) True G136466
TU161152 lncRNA upstream 56513 21674858 ~ 21687429 (+) False G136466
TU161109 lncRNA upstream 382062 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 396781 21346845 ~ 21347161 (+) True G136429
TU160651 lncRNA upstream 778474 20956374 ~ 20965468 (+) True G136056
TU161219 lncRNA downstream 30886 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 30886 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 58599 21824989 ~ 21825322 (+) True G136532
TU161246 lncRNA downstream 73242 21839632 ~ 21839852 (+) True G136544
TU161242 lncRNA downstream 76797 21843187 ~ 21859668 (+) False LOC113533434
XM_034306635.1 mRNA upstream 1381 21694034 ~ 21742561 (+) True LOC113533227
XM_026925206.2 mRNA upstream 56502 21674736 ~ 21687440 (+) True LOC113533228
XM_034306537.1 mRNA upstream 71517 21623985 ~ 21672425 (+) True fgd
XM_026925264.2 mRNA upstream 127859 21567910 ~ 21616083 (+) True LOC113533260
XM_026925442.2 mRNA upstream 181372 21498208 ~ 21562570 (+) False mib2
XM_034306993.1 mRNA downstream 14833 21781223 ~ 21797769 (+) False LOC113533123
XM_034306992.1 mRNA downstream 14834 21781224 ~ 21797769 (+) True LOC113533123
XM_026925798.2 mRNA downstream 41631 21808021 ~ 21824844 (+) True wu:fl23c11
XM_026925800.2 mRNA downstream 41631 21808021 ~ 21824844 (+) False wu:fl23c11
XM_034306994.1 mRNA downstream 41631 21808021 ~ 21824844 (+) False wu:fl23c11
trnaa-ugc_5 other upstream 53450 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 53846 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 54204 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 55351 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 55747 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1481958 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1748196 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1984027 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 2245227 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 2245227 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile