RNA id: XM_026925409.2


Basic Information

Item Value
RNA id XM_026925409.2
length 1400
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC113533337
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20736260 ~ 20739234 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAAGGAGCCATACAAAGCCAAGTCACACTTAAAGAAGGAGACCAAACGATATGATATTGCAAttattaatttacacatttcacTTGTGCATTAGTTTTAAGTATTTGCTGCTTTTATgataaagagtgagagagaatagGGGAaagagcaattttttttgtatcatagAAGAACTGCTTTAGCAGATTGGCTTTCTGTACTTGGAAAATGACACGCTCCTTGCAACAGTTGTTCAGAGACTACCTAGAAAAGTGGCACATTTACAAAAACCGTCTGGTAGCCAAAGACGGACACTGCAACATTGAATATGGCAACGTGGGGTACAGCAGTCGTTTTGCATATGTGCAGGACCTCTGGACCACCTTTGTGGAGATCCGCTGGcgttacattattttattatttgtggcCTCCTTCACTCTTAGCTGGTTCATTTTTGGACTTATTTGGTACTGGATTGCTCATGATAATGGTGATCTTTGGTGGCAAAATCCACCTTCAGACCACAAGCCATGCATATATAATGTGTTTGGCCTCACATCTGCCTTCCTCTACTCACTCGAAACACAGACGACTATTGGTTACGGTCTGCGAGTGCTCAGTCCATACTGCCCTGGTGCTGTCACCATAATTATTATCCAGTCCATCATTGGTTTACTGATTAACTGCTTCTGGTGTGGACTGGTTATGGCCAAAATCGCTTTACCCAAGAAAAGAGCCAAGACCATTACCTTCAGTAAAATGGCAGTCATTTGTCCCAAAAATGCTGCCCTCTGTTTGCAGATAAGAGTGGCCAACTTGCGTAAAACCTTAATGATTGGAAGCCAGCTATATGGCAAGCTGCTTAGGACAACAGTCACTCCAGAAGGTGAGACCATCATTCTGGACCAAGTCAATATTGATTTTATGGTCGATGCTGGAAAAGACAACCTCTTCTTCATTTGTCCGTTGACCTTGTATCATGTAATTGACAAGACAAGTCCATTTTTTAAGTTTGCTTCGGACACAATGCTTCAACAGGAGTTTGAGCTGGTGGTGTTTCTCGATGGCACAGATGAGTCCACCAGCTCCTCCTGCCAAGTCCGGACATCCTACATCCCTCAGGAGATTAAGTGGGGTTACAAGTTCCTCCCTATCATCTCCCGCAGTAAAGAAGGGAAATATTGTGTGGACTTTTCCAATTTTGACAGAGTGGAACCAATTCCAACTCCACACTGTGCTCACTGCTTCTACGATGACCAAAGCCATCATCACAGTCCCAAAAATGGCATTGATAACCAGGGTTTTGAAGTGATAGAAATTATTGATCAAGTCAGTGCTAATGAAATGTAAGATGAACCTCTTGATTCACCAAAAAGCTTATTTGCTCTATCCATTATGctctacagcaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04995 KCNJ1, KIR1.1; potassium inwardly-rectifying channel subfamily J member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160256 lncRNA upstream 550714 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 721490 20014522 ~ 20014770 (+) True G135643
TU160219 lncRNA upstream 723493 20012567 ~ 20012767 (+) True G135641
TU160085 lncRNA upstream 730552 20005119 ~ 20005708 (+) True G135524
TU160034 lncRNA upstream 833893 19843945 ~ 19902367 (+) False LOC113533656
TU160652 lncRNA downstream 197889 20937123 ~ 20939070 (+) True G136057
TU160650 lncRNA downstream 208070 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA downstream 217140 20956374 ~ 20965468 (+) True G136056
TU161105 lncRNA downstream 607611 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 621605 21360839 ~ 21361880 (+) True G136433
XM_034306776.1 mRNA upstream 3056 20704500 ~ 20733204 (+) True parapinopsina
XM_034306777.1 mRNA upstream 3056 20704500 ~ 20733204 (+) False parapinopsina
XM_026925411.2 mRNA upstream 3056 20704500 ~ 20733204 (+) False parapinopsina
XM_026925412.1 mRNA upstream 3056 20705014 ~ 20733204 (+) False parapinopsina
XM_026925410.2 mRNA upstream 176064 20547305 ~ 20560196 (+) True LOC113533338
XM_026925562.2 mRNA downstream 5346 20744580 ~ 20747651 (+) False selenok
XM_026925240.2 mRNA downstream 9745 20748979 ~ 20757581 (+) True actr8
XM_026925241.2 mRNA downstream 29816 20769050 ~ 20784068 (+) True chdh
XM_026925298.2 mRNA downstream 159242 20898476 ~ 20909749 (+) True dcp1a
XM_034306267.1 mRNA downstream 177589 20916823 ~ 20933688 (+) True tkta
trnae-cuc_20 other upstream 3789 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578533.1 other upstream 294069 20222415 ~ 20442191 (+) False LOC113533440
TU160573 other downstream 5405 20744639 ~ 20747856 (+) True selenok
trnaa-ugc_2 other downstream 948890 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 949286 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 950433 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 950791 21690025 ~ 21690096 (+) True trnaa-ugc_4

Expression Profile