RNA id: XM_034306776.1


Basic Information

Item Value
RNA id XM_034306776.1
length 1862
RNA type mRNA
GC content 0.44
exon number 5
gene id parapinopsina
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20704500 ~ 20733204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGCAGCGCCAAAAGAGCGCGCGAGAGCCAAACCAACTGGGGAAAGAGTGGAGGGGGGACATACACAGACGAAAAAGAATGACGGAGCTCGTCTAGTCGTTAGTTTATTCTTTCTTCGGTTACTGTCTCTCCAAGAATGATACAAACGACTCGggtatttatctttttttttacttcgaCTTCTGACGCAGCCGAGCCGTTGTCAGAAACGGGAAACTCGCTGGAGTGTATCGTCTCTCTCAGCTCTCATGATGACATGAGACACACTGGCGAAAAATGAGGCAAAAATTATGCTAACGTCTTGACCACTCACAACGAGACGCAGATTAAGGAAGGACAACGAACagagttaaaaatgaaatgtaaaaggCTTAACTAGAATGATAAAGCAATCAAGAAGAGTACAGTCATAGATCTCAGAAAGAATAAGCTGGTAGAATAATTCCATGGACAATCCGGATCTAAGGATTTTCTCTGCTTATGTCACATATGCTTAAAAGCCTTTTTTGGTGGAACAGTTGTCCATAAAAACCAAGGATGGATCCCATATGACCTCATCAGAGTAAGCTTATTATGGCACTGGCTGACAAACCCTGAACTACCAGATCTTTCTTGAGCTTCTTTGCTGtgaatcaaaaagaaaaaatggcatccattcatctatccaaCTTTTCAGAGGCTGACACAATGCATCAAGGCTCAGTAAATGATCACATCATGCCAAGAATAGGCTACACAATCTTGGCAATCATTATGGCTTTGTTCTCTACTTGTGGCATCATCTTGAATATGGTGGTGATTATTGTGACAATGAGGTACAAACAACTGCGTCAGCCACTAAACTATGCTCTGGTTAATCTAGCAGTGGCTGATCTTGGTTGCGCTGTGTTTGGGGGGCTACTCACGGCAGTCACCAATGCCATGGGCTACTTCAGTCTTGGCAGGATAGGATGTGTTTTGGAAGGCTTTGCTGTTGCCTTCTTTGGTATTGCTGGTTTGTGCTCAGTTGCGGTTATCGCTGTTGACCGCTACATGGTGGTATGCAGACCACTGGGCACAGTGATGTTCCAAACCAAACATGCCCTGGCAGGTGTGGTCTTATCCTGGGTCTGGTCTCTCATTTGGAACACGCCACCACTGTTTGGATGGGGCAGTTACGAACTGGAAGGGGTGATGACCTCCTGTGCCCCCAACTGGTATAGCAGAGACCCAGTCAATGTCTCCTACATCCTGTGCTACTTCATGCTCTGTTTTGCTCTGCCTTTTGCCACCATTATCTTCTCTTACATGCACCTCCTTTATACCTTACGACAGGTGGCTAAGCTGCAAGTGGCAGAATGTGGAAGCACGGCCAAGGCTGAGGTTCAGGTGGCCCGTATGGTGGTCGTCATGGTCATGGCCTTTTTGCTTACATGGCTGCCATATGCAGCCGTTGCCCTGATTGTGATAATTGATTCCAACATCTACATCAACCCAGTGATTGCCACAATACCAGCCTACCTGGCCAAGAGCAGCAATGTCTTCAACCCcatcatttatatattcatgaaCAGACagTTCAGGGACTATGCTTTGCCTTATCTCTTCTGTGGAAAAAACCCTTGGGCATCCAAAGAAGAAGGAGAATCAGGCATCAATACGTTAATTACTACAGTCAGCAAGAGCAGCTCAGTGTCACCATTATAACCATAAATATCAAAGTATTATAAcctaaaataatcaaatactcaattattttctttgttgtatGTATAATGTTTGTGAATATTTGGCAGTGTAGTTTACGTCTGGAATTTATtttggctggatatttttgATGAATAGTTTAGTTTCTGCTACACTTTTATCAGAAATTGGCAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160256 lncRNA upstream 518954 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 689730 20014522 ~ 20014770 (+) True G135643
TU160219 lncRNA upstream 691733 20012567 ~ 20012767 (+) True G135641
TU160085 lncRNA upstream 698792 20005119 ~ 20005708 (+) True G135524
TU160034 lncRNA upstream 802133 19843945 ~ 19902367 (+) False LOC113533656
TU160652 lncRNA downstream 203919 20937123 ~ 20939070 (+) True G136057
TU160650 lncRNA downstream 214100 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA downstream 223170 20956374 ~ 20965468 (+) True G136056
TU161105 lncRNA downstream 613641 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 627635 21360839 ~ 21361880 (+) True G136433
XM_026925410.2 mRNA upstream 144304 20547305 ~ 20560196 (+) True LOC113533338
XM_026925728.2 mRNA upstream 237074 20455304 ~ 20467426 (+) False wnt5a
XM_026925729.2 mRNA upstream 237074 20455305 ~ 20467426 (+) False wnt5a
XM_034306869.1 mRNA upstream 237074 20457206 ~ 20467426 (+) True wnt5a
XM_034306870.1 mRNA upstream 237074 20457563 ~ 20467426 (+) False wnt5a
XM_026925409.2 mRNA downstream 3056 20736260 ~ 20739234 (+) True LOC113533337
XM_026925562.2 mRNA downstream 11376 20744580 ~ 20747651 (+) False selenok
XM_026925240.2 mRNA downstream 15775 20748979 ~ 20757581 (+) True actr8
XM_026925241.2 mRNA downstream 35846 20769050 ~ 20784068 (+) True chdh
XM_026925298.2 mRNA downstream 165272 20898476 ~ 20909749 (+) True dcp1a
XR_004578533.1 other upstream 262309 20222415 ~ 20442191 (+) False LOC113533440
TU160573 other downstream 11435 20744639 ~ 20747856 (+) True selenok
trnaa-ugc_2 other downstream 954920 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 955316 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 956463 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 956821 21690025 ~ 21690096 (+) True trnaa-ugc_4

Expression Profile