RNA id: XM_026925442.2


Basic Information

Item Value
RNA id XM_026925442.2
length 5274
RNA type mRNA
GC content 0.50
exon number 19
gene id mib2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21489384 ~ 21562570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAATGTCATTTCTGAACGTTTGTCCTATTTTCAAGTGATACATTTCGGTCCAGAAGAACACAGTGTCCATCACTGAACAGAGAGCAAAGttcacccaaaaaaacaaacagtcatGGACGAACGCAACAGGCTGAGAGATTTCACGAGCCAGAGCTCACTGACACACCACACTGAGAGCGAGTCAGAGAAGAGCGAAGTTAAATGTCTAACTGGAAATTAAACCATCGAAGATGCTCAGATCACAGAGGATGCTCACATTTGAGGTTCATGTGGTTCACCCCTGACCTGTCTCCGGAGAGCCCCCTACTCGGCACCCTCCCGCTGCCACCAGCTCGCTCACGCACTAGCGGCCCCAGCAGCGGCGCCACCACCCACCCCCCCGCCGAGCTGCCTGCGCGACCCCACCGGAAGCGCAGCGGCGAGGCCGGAAGCGGCAGTGCCAGCCCACCTGTCCGCGGCGCCATGGAGGTGGGTATGCGCGTGGTGCGTGGCGTTGACTGGAAGTGGGGCAACCAGGACGATGGTGAGGGCCATGTGGGCACAGTGGTGGAAGTGGGGCGCCAGGGCAGCACCAGCACACCTGACAAGACAGTTGTGGTGCAGTGGGACAGCGGCACTCGCACCAACTACCGCACCGGCTACCAGGGTGCCTATGACCTGCTGCTTTATGACAACGCACAGATTGGTGTCCGCCACTCGAACATCATTTGCGACAGCTGTAAGAAGCATGGCATCATGGGAATGCGTTGGAAATGCAAGGTGTGCTTCGACTACGACCTGTGCACACACTGCTACATGAACAACAAACACGACCTCTCGCACGCCTTCGAGCGTTACGAGACAGCGCACTCACAGCCAGTGATCTTGACACCGAGGCAAAACCTGTCACGGATTATCCTTAAGGGAATCTTCCAGGGCGTAAAAGTCGTGCGTGGACCCGACTGGGATTGGGGCAACCAAGACGGAGGAGAGGGGAAGATCGGGAAGGTGGTCGATATCCGAGGTTGGGACCAAGAGTCAGGCCGCAGCGTGGCCAGCGTCACCTGGTCCAACGGCACCACCAACGTCTACAGGATGGGCCACAAGGGCAAGGTGGACCTCAAATACGTCTCAGACGGCCAAGGAGGCTACTACTACAAGGAGCACCTGCCCAAACTAGGTGAACATGCAGAACTGCAGAGGCAGGAGAGCGCTGACGGTCACACGTTCCAGCAGGGGGATAAAGTAAAATGCCTGCTGGACGTGGACATCCTCAGGCAGATGCAGGAGGGACACGGAGGCTGGAATCCTAAAATGGCAGAGTACATCTGCAGAATCGGGACCGTGCACAGGATAACGGACCGAGGGGACGTCAGAGTCCAGTACAGTAACAACATACGCTGGACTTTCCACCCAGGCGCTCTGACTAAAGTGCATACGTTTGCAGTAGGTGAGTTGGTGAGGGTCCTGGATGACATCGAGACTGTGAAGAGGCTACAGGCTGGCCATGGAGAGTGGACTGACAGCATGGCACCTGCCCTGGGCCAGGTTGGCAAGGTTTTGAAAGTGTATGCGGATGGTGACCTGCGCGTGGCATTTGGAGGACAGACGTGGACTTTTAACCCTGCGTGTCTCTCTGCTCAGCCTGGCGAGGTGGACGCCAATCTGATGACGGCTGAGAATCCAAGTGAATCAAGAAccACAGTCATTTCAGTCCTGGAGAAGTTGTTGTCTCAGTCCACGGAGCAGGATAACCCCGGGCGCCTGGTCATCGAGGCTGCTCATGGCAGCGCTGCTAAAGTCCGCGAACTAGTGCAGAAACATCCAGACAAGGTGGATATAAAGAACCAGGGGAAGACGGCGCTCCAGGTGGCTGCTCATCAGGGCCATATGGAAGTAGTGAAGGTCCTGCTGCAGGCCAACAGCAGCATTGAGGCCAAGGACGAAGATGGAGATGCAGCGCTGCACTACACAGCATTCGGgaACCAAGCCGAAATCGCACGCCTCCTCCTGAGCAAAGGGGCCAGCGTCAACCTGCTGAACAACTCCATGTGTACAGCGCTCCACATCGCTGTCAACAAGGGCTTCACTGACGTAGTGAGGGTACTTACCGACCACTCTGCCGACGTCAacctgcagGACTCATATGGGGACACACCTCTACACGATGCCATCGCTAAGGACTTCAGGAGCATCATTGAGATCCTGACCGTGGTGCGCAACATTGACTTTACACAGCAGAACAACCGTGGCTTCAACCTGCTGCACCATGCAGCCCTGAAGGGCAACAAACTTGCAACGGAGATGATCCTGGCACGTGCCCGGCAGCTGGCCGACGTGAAGAAGGAAGACGGCTTCTCCGCTCTTCACCTGGCCGCTCTCAATAACCACTACGAGGTGGCCGAGATCCTTATCAAAGAGGGCCGCTGTGATGTCAACATCCGCAATAACCGTGGTCAGACGCCTCTGCAGCTGGCAGTCACGCAGGGCCATATGCAGCTGGTGGAGCTTCTGGTGATGGAGGGAGCCAACGTGAACGCCGAGGACGAGGAGGGAGACACAGCCATGCACACGGCCCTCAGCCGCCAACAACTCACCACCACcctgagcagcacagagagagatgcctcaaacctctacagccGACTGAGTGGCTCAGGGCTGTTGGGGAACACAGAGCTGAATGTTGGGGCTGCTATTGCCTGTTTCCTGGCTCAAGAGGGTGCTGATATAAACTACGCCAACCATAAAGGCAAGAGTCCACTGGACTTGGTGACAGACAGCATCGTGTTGCAGCTGATCAGAAGCTTCTCCGAGAAATACCGACTGCAGGCCGGTACGTGTGGGACGGGTGGCAGCGGGAGCAGTAGCAGCAGTCTGAGGCGGGTTCACACCACACCCAACACCATGACCAACCTGGTCATGCCCAGTGCACCAGGCCCCAGCGAGTGCCTCATCTGCTCCGAGCTCGCCCTGCTTGTGCTCTTCTCCCCATGCCAGCACAGTGTCGCCTGCGAGGAATGCGCTCACAGGATGAAGAAATGCATCAAATGCCAGGTCACCATCACCAAGAAAATACGACAAGACCAAACAGAGGTAGACAGCAGTCCAAACTCGGAGAGCTCGGAGCAGCACCACCTGCTGGAGCAGCTGCAGTCGCGCTACAGGCAGATGGAGGAGCGCATCACTTGCCCCATCTGCATCGACAACCACATCAAGCTTGTGTTTCAGTGCGGCCACGCCTCCTGCATAGACTGCAGCGCCACCCTCAAGACCTGCCCCATATGCCGCCAGAGCATCCGCGAGAGGATCCAGCTCTATGTCTGATGTgtgcacactcactcacacatacacacacacacacacaagagtgtGTCGTGGCTTACTGTTAGATGGCGAGTAAGGGTGGGTAGGATGGGCAGGGGTGGTGTGGGGCGGGGTTGGTGTAGGATGTGCTGTATTTAATCAATCAGTCTGACTTCTCCATCATCATTGTCCAGATGCAGGAAGCCAAGCCCACTCCTGTGGACTCCACcattcatcatttttttgtgtgcGTGCATATGGGGACGTGTGTACACCTGCTTTTTCAGTTTATCAGAAAGAAAATGCAGACACGCAATCCTCTGGGTCAAACAAAACACCAGTCATTTCCACTGCGACTTATCAACTGCTTTCTGTGAGATTTACTCctcttttgatttttaattatttgctgACTCACTGTAGCTCTGAGATGTTTACAGACTTACACTATTGTTGGATTCTCTGTGAAAAACCATAAACCTCTCCATGGATGTAGAATCATTACAGCTGGATGCACAGCAGTGGATGGAGGTGGGCTATTTTCATACAGTCATACAGACTGCAGCTTTAAGTTTCACATTGACACATTGATACAGCGCCTCTCCCAGTCCCTCCTAGTAGACCCTGAAAAGCTTTCCACAAGCGAAGGATATACAATGCATGCTGATATGCATATTATCTATATGATATATTGTGACATGGATTACATTTGTGGTGTTCTAAGGCAAtcagtcttttttatttatgcgTGAAAGCATCCTGTAGCCTCGAGGGCTAGTGAAGGGGGCCGAGCAAGGAAACTCGCAGCACTACTACGTATTAATTTATTCGTTATGGTCAAAGAATGGATaacttgtaaaaaataaataaataaaaggtcatTTACTTTCTTAGGGGTCAGTTTACAAAAGGAAGTTTGCTTAAATAGAGCATGAGACACTAAATTGAAGGATAACACAGTCTAAAAGATGTCAAGCATTAAAATCTAAACGATCGAACATGTTCCTTTTGTAACCTTTACAAAGGGAAACTGAATGAAATTTGATTGATGAGCCACCTCATCCCATTTTGAAAGTGTCAGCTCTCTGGATTGACATCTCCTATAATTAATTTCCTTTGTGCTAGTGTGGTTTGAGGTAAAAATGGTGATCAGAGATCAATTTTTGGCTTTTGTGTCATAATCAGTACGATTAAAACATTAATCTAGGATAAGCTGATCCTAGATCTGAGCTGGGACTTTtcagcaaatctttttttttttttttttcattacacaaTTCAAAGTGGGAAGATTTTTCCCTGATCTAATTTTGTACATTGGCTGTTGAAGACTGCTGCTTAGTTTTCTGATGCATTATGGCGAGGAACTGTCCTGTGCTTTTGCTGTTTACTAAACAGGGCAAACACTATACTACGCCTTCACACTTGGATATTAGTCAGTATCCGACggttattttctttcttttttttttctcaaagtgttaaaatgttaattgcatctgaatggcaaaaaaaaaagtgtgcacatTTGTCAATAAGTGTCTTACCATTGTCAGTCGCTACCTAAATTTCCCTAACCTAAGCTGAGCATTCAAACCACTTACATGTTTTGTTCCAGAAGGGCTCACTGTATGCATCgaaaaaattctattttaattGTTAcgatttcattcattttgtattatattCCATGTCAAACAAAATGGGGTTTTGTAGATTCCATGTTTGGGCTTAAAATACTAAGATGTACATATATTGGAATGTCAGTTAAGAGatcctgctgcatcacagcttgAGCATGCTAGCAAAGTAAAATGAATATCAGTGCCAAATTTAACATGTCCAAAAAACAGTCATTAGTTCTTCATACAAGATATGAAATCTTGTGATCTTCTCATGGATTCTGAGACATCAGTATTTGTTTGTGATTTCACAAAACTTGAATTTGAGTTTTTCCCCTTtcagttcttaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0002090 regulation of receptor internalization biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161109 lncRNA upstream 136328 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 151047 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 532740 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 532740 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 559138 20937123 ~ 20939070 (+) True G136057
TU161152 lncRNA downstream 112288 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 112288 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 234706 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 234706 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 262419 21824989 ~ 21825322 (+) True G136532
XM_026925096.2 mRNA upstream 13251 21481381 ~ 21484957 (+) True ubiad1
XM_026925622.2 mRNA upstream 41485 21438251 ~ 21456723 (+) False cdk11b
XM_026925264.2 mRNA downstream 5340 21567910 ~ 21616083 (+) True LOC113533260
XM_034306537.1 mRNA downstream 61415 21623985 ~ 21672425 (+) True fgd
XM_026925206.2 mRNA downstream 112166 21674736 ~ 21687440 (+) True LOC113533228
XM_034306635.1 mRNA downstream 131464 21694034 ~ 21742561 (+) True LOC113533227
XM_026925406.2 mRNA downstream 181372 21743942 ~ 21766390 (+) True brpf1
TU160573 other upstream 750352 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 765737 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 1056017 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 125554 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 125950 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 127097 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 127455 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 127851 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile