RNA id: XM_034306716.1


Basic Information

Item Value
RNA id XM_034306716.1
length 3046
RNA type mRNA
GC content 0.42
exon number 11
gene id nadka
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21368806 ~ 21394676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGCAACCGGACTGGCTAGTCGAGTAGGTTTCTTGAGCAGCAGATGACAGCTCGGAAGCTGCCGCTACACCGGCCCGCGTGCTATTGGGATAGCAACAGAAACAGGCGGAATGTCATCGTGAGAGAATAGCACCGCGTATGGAGAAAGACAGCTAATCACTTATTCATGGCGGTGCTGTGAGCCGTACAGCGCAGCGGCCAGCGAGTTTCTTGAATTCCCGCTTCCCTGCAGGTAGCTGCGTGTAACCGCGCAGGATCAGGCCAATGCGGACCCAGTCACTGCATGGACCAAGTCCAGTGACCACATTTGGGCCCAAAGCTTGTATGATGAAGAACCCAAAAGCAGTGATgCATATTCAGGACCCAGCAAGTCAGAGGTTGACCTGGAACAAGCCACCCAAAAGTGTCCTTGTAATTAAAAAGATTCAGGATGTCAGTCTTCTGCAGCCTTTTAAAGAGCTTTGCATCTTCCTCACagagcagaaaaaaatgatcGTTTACGTGGAGAGGAAAGTCCTGGAGGACCCCGCCATTGCTAACGACGAGAGCTTTCTGGCTGTAAAAAAGAGTTTTTGCACTTTTAGAGAAGATTATGATGACATCTCCAATCGGGTAGACTTCATCATTTGTTTGGGAGGAGATGGAACTTTGCTGTACGCTTCCTCCCTCTTCCAGGAGAGCGTTCCTCCAGTTATGCCCTTCCATTTGGGCTCTCTGGGCTTTCTGACACCTTTTAACTTCGACACCTACCAATCTCAGGTTACACAGGTTATTGAAGGCAACGCGGCCATAATCCTGCGGAGCCGGCTGAAGGTAAAGGTGCTGAAAGAAAACTGGGAGAAAACCAGATCAAAGGAGAAAAATGCGATCATCGCAAATGGGGAAGCTGAGTCTAGCCGCAAAACTATGCAATATCAAGTGCTGAATGAGGTCGTTGTGGACCGAGGTCCCTCCTCCTACCTCTCTAACGTTGATCTTTTCCTGGACGGTCACCTGATCACCACCGTACAAGGCGATGGAGTGATCGTGTCAACTCCGACAGGCAGTACTGCGTACGCCGTGGCAGCAGGAGCCTCCATGATCCACCCCAACGTCCCAGCCATCATGATCACCCCCATCTGTCCTCACTCGCTCTCTTTCAGACCCATAGTTGTCCCTGCTGGCGTCGAGCTCAAGATTATGCTATCACGTGAGGCCAGAAACAATGCATGGGTTTCCTTTGATGGGAGGAAACGGCAGGAGATTGGACATGGAGACAGcatcaccatcaccacttCGTGCTTCCCTGTCCCATCCATCTGTTTCCGGGACCCAGTGAACGACTGGTTTGAAAGTCTGGCTCAGTGCTTGCACTGGAACGTGCGCAAGAAGCAGAGCCACCTGAGCTCAGAGGAAGAGGAGTTTTGAGTATTTGCTCGGAAGCACTTTGTTTCattgttcttgttcttctttttatgCCTCTCTGGGACACGCCGTCCCACTTTTGACCACAGACTTTTGTGAAGCCGTTGCTTCTTGGTCAATTTTGTGTGTTagtaacaatttttaaaaaaaaaaaaaaaaaggaagaagaataATTCCAATTTGTAGATAGTGTATGACAACTGTCATAAGCTGCCAGGAATATTACAAAGTAGTTTCATGACAACACAGTATGAGGAGTTTGAATGAAACATCAGGTATTGTTAGCTCGTGCATGAGGAGCATTTAAGCATCACAGCAATAACTGGATATCAATCAAATCGTGCCTTAAATTACATAGAATGTTAGAAATCCTTAATGGGGCGTGTAACGACGTCTTATATTTGTGTATCATAGTTATACatattctataaataaatgtcaggCCAGAGGGACTCATTTGTGCAGGGCACTGCGCAAAAAAGCTAgtacatacatatttttttttgtctaggaAACTACTGTTTAATTTTAAGAGTCTTACAGGCAAACAACCACCATAAAGTATTTAATTCCTGAGATCACATAGTTCATTCCAGGTCTGTTGGgaccactgatttttttttcccccctatatTTAAGGTTTTGAGCAATATTTTATTAAGGAATTACGATTATTGGTTATTGTTTCCCCATTCCATCACCTTTCGGagtttataattatgtatattGAGTGTTGAAGTAAGTATATGGAGGCCGTGTGCAGTTTCAAGTGTCCTTCTCACTGAACTTTAGCTTTACGTCTCAAAATGTTTAACAGGCTTCTCTACCACATGAAGACTTATCAAAAGGACCTATTTTGTGTTACTACATTGTGCTTCGTCTTGGTCTAGTTTACTACTATATTATGGCTATCAAAGGTCAATTCAGCCACCTGTGCCCTGTTCTAGAAAAAGGAAACGAGGAAAAATCTGTTTACATTCATTCTCCCTCTCAGACATgactgatgtttttatttaatctttgttCAGGTAATGTACGAAAAAAATTGCATTGTcattaataatgtcatttatGTACTCTACCTGTTAACTAGCTTAGGTAAGTAATGCTGTTGTCCTGGCTTATGTTACTTACGAGgcaccctcttttttttttttttttttttttaagcttattatatttaatgaatCCTTGTTCTCAGACGTTTTTGATTTAATGTACATCCATGTGAAGTAGCTACTATTTTATGAAACCAAAATAACCAGTCTTAATTATTCTCACTGACATAATTAGATAGTCATTTGTGAGTGACAAGATAAGATGCTCAGGAGAGAATGAATTTGCGTGCAGGAATTTCTTGGGGCAGAGCCGAGCTTGCGTTGTAATGAGGTGTCTCATTCTTTCAAATCTGCTTCAGACATAACTAATTAAaaattttcatgtgtttttgttggAATTGTCCGATCTTTTCACACAAAACTTTTCATCATGTttctttggggtttttttttgtttgtttgtttgtttttaaattttacacacaagTTTTTTGTAATGTATCTTTTCAGAACATACTCTAAATGGTTCTTGAATTTTTTACATAGCACTTTAATAAATGATCCACAGCTGATCAAACTATCA

Function

GO:

id name namespace
GO:0006741 NADP biosynthetic process biological_process
GO:0019674 NAD metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0003951 NAD+ kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161109 lncRNA upstream 6926 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 21645 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 403338 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 403338 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 429736 20937123 ~ 20939070 (+) True G136057
TU161152 lncRNA downstream 280182 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 280182 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 402600 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 402600 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 430313 21824989 ~ 21825322 (+) True G136532
XM_034306833.1 mRNA upstream 13523 21338426 ~ 21355283 (+) True LOC113533443
XM_026925133.2 mRNA upstream 54634 21276687 ~ 21314172 (+) True prickle2a
XM_034306363.1 mRNA upstream 118181 21223634 ~ 21250625 (+) True LOC113533151
XM_034306364.1 mRNA upstream 118181 21223634 ~ 21250625 (+) False LOC113533151
XM_034306372.1 mRNA upstream 182882 21075827 ~ 21185924 (+) True LOC113533118
XM_026925521.2 mRNA downstream 22216 21416892 ~ 21433503 (+) False LOC113533389
XM_026925520.2 mRNA downstream 22218 21416894 ~ 21435953 (+) True LOC113533389
XM_034306733.1 mRNA downstream 22755 21417431 ~ 21435953 (+) False LOC113533389
XM_026925626.2 mRNA downstream 43574 21438250 ~ 21456723 (+) False cdk11b
XM_026925622.2 mRNA downstream 43575 21438251 ~ 21456723 (+) False cdk11b
TU160573 other upstream 620950 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 636335 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 926615 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 293448 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 293844 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 294991 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 295349 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 295745 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile