RNA id: XM_026925504.2


Basic Information

Item Value
RNA id XM_026925504.2
length 4615
RNA type mRNA
GC content 0.43
exon number 11
gene id kank3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22685502 ~ 22706507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCTCAGTCCCTGCTCCAGCGCTTCAGCTGAACTTATTCCTGATTGGATCTTCTTTCCGTCTATCACAAGCCTATAATCAACACAAACGCTACTTGTACGCCTAATTCCCGTCTGGaaaaagccaaaaacacacatttagtCTGTTTTTTAAGACGAGACACGACTCACACTGTGGGTCCTGAACTGACTTCTGGGGGGGCACCAGAAAATTCCAAAAGATGACACAGTCTGTGCACATAAGCCCCAAATTGAATCTGGGTTCCCCTTTTCATTGTGCCACTCAAGACGAAATGGATCATGGTGCATCCTATTCTGTACAGACTCCATATGGATTCCAGTTGGACCTTGATTTCCTTAAATATGTGGAAGAAATAGAGAGTGGTCAGACTTTCCGCCGAACAAACATGAGCCCTCGGAGAGGATCACGTAGTGACAGAGTCTCTCAGAGGAGTGTAGGGGGTCGCACTAGTGGCTGGACTTCTACTGAATCACTGGCATCAACAACCAGCGAAGATGGACGGTCTCTTCCCCCACCTGTTCCTCGAAGCCATGTTACATCAGCCAGCAGGTCACAGCCACTTTCACCATCTTTGGCGATCAGTCCCACACTACCATCTTGTTCAAAAATGCCACCTGCCCCACCACCACGTAACCCCAGGGTAGAGAGAACATTACTAGAGACGAGCCGTCGTCTACAGCAGGAGCAGAGTCTATACCCAAATGGTTTAAACTCTCCTCTTTCAGACCTTCCTAAGGAGGGTGTCAAAGATTGTGGATCAAATAGCAGCTTTTCAGTGCCTTCCCAGATGGCTACAGATGGTCACCTACTACAGATTTCATCAGCTGTTCAGAATCCCTCTACTGGTGGCTGGACCAGATTTAGTCCTCAGAATTCTGGGAGGAGCACCCCAGCCTCCAGCTCTGGAACGTCTTCATTTCCCCCAGGGCAGCTTCAGACAGTACGAGAACAGATGGCCTTAGCCCTTAGACAGCTCAGGGAGATGGAAGAAAAAGTAAAGGGAGTACCAGCACTTGAAAGAGAAGTGTCCATGCTGCGTGATGAAAAGGATAGGCTGCTTGTGGCCCttcaaaagaaaacagaagaactTAGTGCTCTGATCAATGCAAAAAACTCTGCTATGGTAGATCCTGCACACTTATCATCTTTAGATCCCAGCAGTGCAAGTCAAGAGAAGAGATCtggtgaaaaaggaaaagaaccTCCTGTTCTGGTGATAGAAAAAAGATCCATAGCTGTAGGTAGTGATGTTCCCCTTAAAATTGTGGTGGTTCAGGATGCAAAAGATGCAGCCGTAGAAGCTGCTGTTGATGTCTGTCACAGAGGTGTGGAAACTGAGCCAGTGACCGTCTGTGATGAAGAAGTTCAGGCCAAAGTCCCAACAAATGAAGTGGCGGTCTGGGTAATGGAATCATTACTTGGGCTGTCAAGTGAGACTGAACAAGAAATAGACAGCCTGCAGGAGACCATTAAGTGTCAGCAAGAGTCAGTCCATCTCCTTGAGAGAAGATTAACCCAGGCCAATCAGGACCTTGAGGAGTTAAGAGCTCTGGAGATGGCAAGAATGTCTAAGATCATGATAGAAAGAGAAACACTTGTCAAACCAGAAACAGCTGATGTGCTAGTGGAAACTGAGCTTTGTTCCAAAACCTCTGTAGGAGTTGGGGTTTCCGGTGCAGACTTTCCAGCAATGAAAACTGATCAAAGCATTCAAACGGACTTTGTGGAAGCATCAAATAAAAAGATGGCTCTAATCCAGGTCAACAGAGGTATTCAGTGGGAAGATCTTTTTAGCACTGGCAAAAAAGACAATCAGGAACAGTCTGTCTCTGCTGATGGTCCCCTGAAATCCATCATGAAGAGAAAGGATGGGAGTGGCTCGAGTGGTGCTTGCAGCAGTGGCAAGAAAAGCTTAAAATTTGTAGGGATTCTTAATGGAGGCTATGAGTCAACATCTAGtgaagaggaagatgaggaggatgaaggaaGCTCCTCTGATGAAAGTGCAACTGGCAGGTGCTCAGACAGCAGTGAGGAAGAGGCTGCAGCTCTAGAGGATACTTCTGATGAAGAAAGGAACATTAATTTGGATGACAGTGATAGTGATGAAAACATACCAGCTGTAACAGATGGTGTTAAGGAACAGGCTGAAGTACTAAAGGAAAAGTTTGAACTGAGTTCAAAAATGCGTGAGGCTTGCCTCATTTTAAAGAACCATCTTAATGATGGTGCCAAAACAGCAAAGAGTAAAGAACTGCTCTCCAGCACCCATACCGTGCAGCTGGAATGGTTCAGAGTGTCCAGTGCTAAGACAGCACAGCCGTCCCGAGTTTCCAACTACCTGATGGCTTTCTCTGAGCTTTCCCCTGCTCTGGTGCGGCACGTAGTCAACATGACCGACGGCAATGGCAACACAGCTTTGCATTACAGTGTCTCCCATTCCAACTTCACCATAGTTGGACTCCTACTTGACACAGGTGTGTGCAATGTGGATAAGCAGAACAAGGCAGGATATACTGCTGTGATGCTGGCAGCATTATCAGCAGTGAAAGAAGAGGAAGACTTGTTGGTAGTCAAGAAGCTATTCAGTCTGGGCAATGTCAATGCCAAGGCAAGCCAGGCTGGTCAGACGGCACTCATGCTGGCAGTGAGCCACGGAAGGCAGGAGATGGTGCGAGCGCTACTTGAGTGCGGTGCCAGTGTGAACATACAGGATGACGAGGGCTCCACAGCCCTCATGTGTGCCAGCGAGCATGGGCGTGCCGAAATCGTCTCTCTTCTGCTTGAGCAGCCTGGCTGTGACATTGCCATTGTAGACAACGATGGCAGCAATGCCCTGTCTATTGCCCTGGAGGCTTCCCACAATGACATTGCAGTGCTACTTTACGCCCACATGAACTACTCTAAAGCTCAGACTGATgtGTCCCCCAGAGCAAACCCTCGGAGTCCATCCAGTCCTAGAAAGACATGGCCCTCTGAGTGATGAGCTACTAGCTCTAAAACTGGCAAGAAGTGAATATTAGAAGCATAAACTACCTTTACTGAAAAACTAACATCgttcacatcacaggtttatatgtaATAATGTTGTTTGTTCCAGATATTCCATTTACATACAGTGTTATGTCATTTAATGCATTATACTAcagttattatttgtattattggGTATGAAAGACATCAGTGGATGTTAGATTTTTAGTCTTGTGCAAAGAGGACAATCAAGACCACTGTTGCTCATTTTAAAGATGTGAGTCACTGATTTGAGAAGCAAAAAATGTCTTAGCTAAGACTTTCATTGAATGATGTTAGGTTCATCAGATTCTCAGAGTGGATTGATGTACAGGCCAAAGTGAGCTTTGATTTGTTCAGACTGAGCATGGCCATTGTCCATTTAGAACTCACAACAGACTGTAGCTTTAAATCTGCATTATCTCACAGTATTTCACAGTGTTCTGTTTTTGGGTTCTTACAATGAAACCTAACAAGCAACACAGCACTGACTAGCTAGAAAATGACATGTTTGTAGACTTACCTGATCTGGTGCAATGTTTCCTTCTAGCAACCACACCAAACTTacaaacattatatttacaacTGAACTGTAtctattcttaaaaaaaacacagagcgCCTTCATAAAGGCAAGGGTGATTTTTAATGCAAAGTATATTTTTAGACTTAAAGTAAAACGTGCATTCactttttagaattttttaagAAACCTAACCCATGTGggcaggttaaaaaaaaagccgaCTTAGAAAACACTGTTCTAGCctggtatgattttttttgtacttttttttgtccagaAATTTAGTAGTAATAGATATGTGCTATTACGGAGAATTACGGAGAAAAACAGGCCACAAATAGCAAACATTTTCTTACAATATTTAAGATGTCTTGGTGGATGTGGCCCTTTGTATACAACTGACTTACTGTTGCTGTATAGGTTTATTTAGGGAGCACAGGTCCTATATCAATACTAACTCCAGACTATTTAgctaaattacaaataataccCAAAGTACAATCTGCTCAAAATGCACATTTGAGCATTGCAGGAATCATAGAGTTAGAACCAGTTCCCAGATGGTCAAATCATAAAATGTTGCTCCTTCTTGGGAATTCATATCACGGTAAGGTCGATACAAACCTGTAACCGCAACATCTGAGGGTTGCACTTTGAGCAGAGATAATCGTCAGTCCACTTGGTTAGTTTGTGCCACCTAGAGGTGAACATGCACATGAATCCTGGGAGATGTGGAATGGAAAAGTTGGTAACCTTTGCTTGAAATAGTAGTGTTGCTTACTGCGCTCTCTACCTACACTGCAGTGTAATTCAGCTAGACAACTGCAGGATACTTCAACTACTTAACTGTTAGTCATTAATGTTcacagggtttaaaaaaaagaaagctgcaAGCAGTAGAAGATGctgcatacattttttttttaaatgttaaagattGTACCAAAGATAATTTAACATGGCTCTTTAAGGTATTTTCCCCAATCCTAAAGGCTTATGCAGGAGACAGATGGATGctttaaccaaaaaaacaaacaaacaaacaaaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162220 lncRNA upstream 1471 22681865 ~ 22684031 (+) True G137371
TU162078 lncRNA upstream 48513 22635664 ~ 22636989 (+) False LOC113533432
TU162079 lncRNA upstream 48615 22635664 ~ 22636887 (+) False LOC113533432
TU162073 lncRNA upstream 92234 22592233 ~ 22593268 (+) True G137232
TU162068 lncRNA upstream 174326 22510905 ~ 22511176 (+) True G137229
TU162259 lncRNA downstream 18655 22725162 ~ 22730142 (+) True G137401
TU162351 lncRNA downstream 210757 22917264 ~ 22919033 (+) True G137486
TU162496 lncRNA downstream 245458 22951965 ~ 22953295 (+) True G137613
TU162497 lncRNA downstream 245600 22952107 ~ 22953295 (+) False G137613
TU162511 lncRNA downstream 256624 22963131 ~ 22963354 (+) True G137626
XM_034306780.1 mRNA upstream 48528 22594534 ~ 22636974 (+) False LOC113533432
XM_026925582.2 mRNA upstream 48528 22594535 ~ 22636974 (+) True LOC113533432
XM_026925584.2 mRNA upstream 48528 22594535 ~ 22636974 (+) False LOC113533432
XM_026925541.2 mRNA upstream 101661 22512072 ~ 22583841 (+) False acot7
XM_026925542.2 mRNA upstream 101661 22513000 ~ 22583841 (+) True acot7
XM_026925118.2 mRNA downstream 155819 22862326 ~ 22867020 (+) True pex10
XM_026925506.2 mRNA downstream 192497 22899004 ~ 22915980 (+) True clcn6
XM_026925507.2 mRNA downstream 192497 22899004 ~ 22915980 (+) False clcn6
XM_034306280.1 mRNA downstream 256995 22963502 ~ 22975156 (+) False plod1a
XM_026925883.2 mRNA downstream 257002 22963509 ~ 22977089 (+) True plod1a
trnaa-ugc_5 other upstream 995010 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 995406 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 995764 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 996911 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 997307 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 541841 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 808079 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1043910 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1305110 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1305110 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile