RNA id: XM_034306733.1


Basic Information

Item Value
RNA id XM_034306733.1
length 3967
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113533389
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21416892 ~ 21435953 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATAGTCAAACTCTCTGTTTGACTTGTGTTGGATCTGGACTGTTGATGATTAGATCATGTCTTATCTCCTCTGAGTGCTTTATTCTTTCACTCTTCACTAAACTGCACGTCTGGAAACGCCTCAAGAACTTTAAGACACTTTTTACACACAGGAAACTACTTTGTTAAGGTTTACTTTTCACTGGTTACAGACTACTGTCAACTTGTACATTTACACATCCAGAGGGATATTTAAAGAAGCCCAATAACTCCAAAAAAATCCAGAGAACGTCCGACTTCCACCACTAGACTCTTCAACATGTTTCCACGTTTTCCTTTGAGTGACATTATACCCTCTGCCATGGTGTAGATCTGTCGCTTCACTTTCTTCCCCTGCGTCCTGAAGAGTGGGTGCTGCTTGTAAGCCCCACACTCACTACGTGCGCCATGCCGAGCAATGGCCGAGTGGGGAGATCCATGTTCTCGAAGCTTCTTTTGCCGTTCAGGAGGCCGCGTCAGGAGAGGGTGATCTTGGCGCGCAGCGAGAGCGTACCCAGCGAGCATGTCTTGAAAGTCACCATTACCGAGACGACGGTGATCGAAGCCGACTCGGGTGTGTGGAATTCCAGATCGCTGGCATACCTCGGCTTGTGGTACTTCTTCAGCTTCTGTACACTCTTTCTCAACAAATACATCCTGTCTCTGCTGGAGGGAGAGCCAAGCGTACTGGGTGCTGTACAGATGCTCTCCACCACAGTGATTGGCTGTATCAAGATGTTTGTGCCTTGTTGCCTGTACCAGCACAAATCCCGTGCTGAATACCCACCCAACTTTCTCATGATCATGCTCTTCGTGGGATTAATGAGGTTCACCACTGTGGTGTTGGGGCTGGTTAGCCTGAAAAGCGTAGCCGTGTCGTTTGCTGAGACGGTGAAAAGCTCAGCGCCCATCTTCACCGTCATAATGTCCAGACTGATACTGGGGGAGTACACAGGTCTTTGGGTGAACTTGTCTCTGTTCCCGGTAATGGCCGGTCTAGCTCTCTGTACAGCCACTGAAATCAGTTTCAACATGTTAGGCTTCTCTGCTGCTCTCTCCACTAACATCATGGACTGCTTACAGAATGTATTTTCTAAGAAGTTGCTAAGTGGAGACAAATATAAATTCAGCCCTCCAGAACTGCAATTCTTCACTAGTGCAGCTGCAGTGATCATGCTCATTCCTGCCTGGGCCTTCCTCATGGATATCCATTTGTTTGGAAAAAGTGGGCAGGGCTTAAACCTGACCCAGGACATTGTGGTGCTGTTGCTGTTTGACGGAGTCCTGTTTCATCTGCAGAGCGTTACAGCCTACGCCCTCATGGGACGCATATCACCTGTCACTTTCAGTGTGGCAAGCACAGTGAAGCACGCTTTGTCCATCTGGCTGAGCATCATCGTCTTCAGTAACCCCATCACACTGTTGTCTGCAGCGGGCACCGTAATGGTGGTTGTGGGCGTTATGCTGTACAACAAGGCCAAACAAGTGCAGAGAGATACTCTGCAGGCTCTCGCCCAGTCAGCAGATTCGGACCACAGACCCTTACTTCAAGAGTCCAACATGAAAGCAGCTGATTGAATCAGATGGGACTTAAATCCTACGAGGATagaagtttttatatttatttcagttttccaAGAGATGGAGAAAAGTATTATTCCAACTATTTTTGCAACACGTCCTCATCAAGTTCCCCATATGACGTATTACAGACCTCACACGAGTGGTCGCTTGCATAAAAGGTAGAGGGTCTAAGAAGGAGCAGATTTTTTGTTCGGAATTGACCAGGCGTAAAATATACTTTAGTGATTGGTTCGATTTCTTTTAATCTAGGTAAACGTGCGGAGTCACATTGCCGTCTTAATAAGATGACTTCCTGATTAGTTGGCAGAACATAGACaaactatatttaaatatataatccTTCTATACATTTACAAACCTCTTCACCCTTTTTTGCTTGTACATATACAATCATATCGACACCTAGGGACGATCTAATCAACATCACTTggtgaaataaaatgttggaAATGTGGCGAGGGAATATTAGCAAGGTTGCGTTGGAACAGAGGATTTGTGGGTGGAGAAAAGAGGAGTTTTAACCCCAGAAACAAACTGATCTAGTGGTACATATTCTTTGACATGTCTTACAATCCACGGCCTACATACTTGTACAACTGCTGACCAATGTCAGCCTTGTACCTCAAATATTATTAACATGCTAATATTAAATGTACCACTGTCAGTATAGCTTGGGCATTTAACTATTCTGAAAAAATACAGTAGttatcatttttcagatttcattatctattttttttttttttaaaatggttagACCACTAACAAATAAGGCTGCTAAAAAGTTATTTCCCAATGAGTCGGACATTTATAAGacgaaaaaaagaaagctgacGTTATTAAACGATCTAGATTTCAGCCAAAGTGGACATTTTTATTATGTCTTTCTGAAGATGCAGGAAAGACTATTATTATGGTTATAAACAAGGCTTCAAAATGAATATTGACCAAAAAAGATGTACGTATATTTAGGAGCCAAATCAATCCAGACCATGAATGACCAAAAGTAGAGCAATAACAGTGTGTTGTTATGAGCCAGCGTATATCAGGCCAGACTGGCACAGGGATAGACATCTCTGGTCAGTTTGTCCTCTTGTGATATCTATTCTTTtatcattccttttttttactaCACAAATTTTACTGTAAGTAGCTTATCCAGTAGTcaaatttctgtaatattttctcattttaagcttAAAATTTTCTATTCAGAtcatttttgcttctttctagaaataactGCTTGACTATTAGCAAAATGTGCCTGTTCATAGAACAagcttgaaattaaaaaaaaaaaaaaaaaaaaaaactctagaaataagtttaacTAATACATGATTATTATGATAGaccttttttctcatttcaagaTTGAAATCAGACACAAATTATACCACGATTATTCAGGTAGCTCCTGTACTTTGAACGACCTACGAGCAGCTACGGCCACTTTGTTGTGACTGTGGAGATGTTGGTTCTTTAAACCGTGATCTTTTTTATACCGAAGTGCAACACAGTGCATCCTTAGGTATTAATGTGTGATCCATTGATGCATATTGATGTATTGTTGCATCcctgtcattattttttttttttatgattgtaGAGATATTTGTTCTTTAGTCAGTAACACAGTTCTGTTTGGTATACAGGGATGATGCACTGCGTCCGTGAGTATTGATGCAAGACACTTTGATGCAGATATATACGCATTGTACTGTTAGTCGTTCTGATATGTCTGCCATGGGGACAGTTTATGGTTTCTACCTGAGCTTACagtctatatttttttttcaactgggCCAAATGTCTGTTGTTACTTGCCGACAGAATATTACTGACAGAACCTGTGAACAGCCCTACGATTCTGACAGACCCTGTGTTCCTTAGACTACTGAGCTAAAGACTGTTTAATAATCAGTCAGTCATCTATTTTACACTCAACTAAGAGCCTCGGATTCTTGTCTTTTACTTGATCTGTGTAGAAGGGAGTTGTACATGAAGCTTTGTGTTCTCAACCTGTGTACTGACATTTCAATTTCTAAAATCACTCTCCTTAGCCAGATATTTTAAActataatttaatttctttcatttactACAAGTGAACATATCAATATGATGGTCTTAGTAGCAGAAAGACAGCTATGGCAatgtttgtttctatagtaacgattAATGAGGTTCATGTTTTAATACTGAAAATGATGCTtcttatgtatttttgtctgtacAAACTGGTCTCacctgtgtttaaatgtgttcattgaTGAGGTGTACAGGTATCATTTTAATTTGGAGGAAAAATGTCACATGAATTTAGTCTCAGATTTGTATTAAACGGAATACATCTTTTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161109 lncRNA upstream 55551 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 70270 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 451963 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 451963 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 478361 20937123 ~ 20939070 (+) True G136057
TU161152 lncRNA downstream 238905 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 238905 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 361323 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 361323 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 389036 21824989 ~ 21825322 (+) True G136532
XM_026925485.2 mRNA upstream 22755 21368806 ~ 21394676 (+) True nadka
XM_034306716.1 mRNA upstream 22755 21368806 ~ 21394676 (+) False nadka
XM_034306717.1 mRNA upstream 22755 21383531 ~ 21394676 (+) False nadka
XM_034306833.1 mRNA upstream 62148 21338426 ~ 21355283 (+) True LOC113533443
XM_026925133.2 mRNA upstream 103259 21276687 ~ 21314172 (+) True prickle2a
XM_026925626.2 mRNA downstream 2297 21438250 ~ 21456723 (+) False cdk11b
XM_026925622.2 mRNA downstream 2298 21438251 ~ 21456723 (+) False cdk11b
XM_026925624.2 mRNA downstream 2298 21438251 ~ 21456723 (+) False cdk11b
XM_026925625.2 mRNA downstream 2310 21438263 ~ 21456723 (+) False cdk11b
XM_026925623.2 mRNA downstream 2311 21438264 ~ 21456723 (+) True cdk11b
TU160573 other upstream 669575 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 684960 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 975240 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 252171 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 252567 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 253714 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 254072 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 254468 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile