RNA id: XM_026925543.2


Basic Information

Item Value
RNA id XM_026925543.2
length 1410
RNA type mRNA
GC content 0.46
exon number 10
gene id acot7
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22512072 ~ 22583841 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATAGTCTGTAGTAGAAGAAGTGATGAATTAAAGGCctggtttccttttgttttGGCTTAGAAACACAAGCAGCTTCTCTAATTTGTGACTCAGGAGTTTATTCTGGCACACAAATGGCTCTTACTCAGCTGACCAGAATTATGCGACCAGATGACGCCAACATCGTGGGTAACGTCCATGGTGGGACAATCCTGAAGATGATTGAGGAAGCTGGGTGCATTATAGGAACTCGCCACTGTAATACTCAAACTGGGGACCGCTGTGTTGCTGCCCTGGCACGAGTGGAGCGCACTGATTTCCTGCACCCCATGTTCATTGGCGAGGTGGCCCATGTGAGCGCGGAGATCACCTACACCTCCAAACACTCTGTGGAGGTGCAGGTCAACGTGGTGTCTGAAAACATACTGACAGGTTCCAAGAAGGTGACCAACAAGGCAACCCTGTGGTATGTCCCCTTATCACTTCAAAATGTGGACAAAATTATTGAAGTCCCCCCCATTGAGTACTCCAGTCTTGGCCAGGAAGAACTGGGTAAGAAGAGGTATGAAGCTCAGAAGCTTGAACGAATTGAAACAAAAGAAAGGAATGGCGAGATCATTACACCAGTTTTTCTTCCTGaaagacagacaaaagaacCATATACTGTTGGATTCAGCCAGTCGAGCCTCATCCACCTGATTGGTCCTTCAGATTGCACTCTGCATGGCTTTGTACATGGCGGTGTGACCATGAAGCTGATGGACGAGGTGGCAGGAATCGTGGCCGCTCGTCACTGCAAGACCAACATTGTGACTGCGTCTGTGGATGCCATCAACTTTCACCGCAAGATCAAGAAAGGTTGTGTGATCACAGTATCCGGGAGAATGACTTTTACTAGTAACAAGTCAATGGAGATCGAGGTGTTTGTGGATGCCGATCAGTTGGCGGACACAGAGAAGGGGAAATATCGGGCCGTCACTGCCTTCTTCACCTACATTTCTCTGGACAAGCAAAACAAGCCGTTGCCTGTGCCTCCCCTGAAGctGGAAGGTGAAGAGGAGCAGAAGCGTTTTGAAGAAGGAAAACTGCGGTACCTTCAAAACAAGGCAAAGAGAGTGGCGGACAAGGAGCAGAAACAATGATGCCCCTCAGTACACGAGCATAATATAGTAGTGTAGCGGAATATTTTAGTAGAATAAAGGTCTCAGTAAAAAACCACTCTTATCCTTATTGTAGCCGAGTggatgaaaagggaaaaaaactattttacgTGAATCATACTTTCCATGTTTGTTGTTTCACTGCTGCATACCAAAGCACCTTGTGAACAGAGTATTATATTATGTAAGTCTTATTTATGTCTGAAGAGCCCTATTTATGAAACGCTTTGATCATTCTGTGCGATAATAAACATGATATGCTGATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162068 lncRNA upstream 9319 22510905 ~ 22511176 (+) True G137229
TU162067 lncRNA upstream 11001 22509211 ~ 22509494 (+) False LOC113533405
TU161899 lncRNA upstream 49165 22471041 ~ 22471330 (+) True G137088
TU161898 lncRNA upstream 51656 22468634 ~ 22468839 (+) True G137087
TU161897 lncRNA upstream 53466 22466767 ~ 22467029 (+) True G137086
TU162073 lncRNA downstream 8392 22592233 ~ 22593268 (+) True G137232
TU162078 lncRNA downstream 51823 22635664 ~ 22636989 (+) False LOC113533432
TU162079 lncRNA downstream 51823 22635664 ~ 22636887 (+) False LOC113533432
TU162220 lncRNA downstream 98024 22681865 ~ 22684031 (+) True G137371
TU162259 lncRNA downstream 141321 22725162 ~ 22730142 (+) True G137401
XM_026925544.2 mRNA upstream 11086 22507626 ~ 22509409 (+) True LOC113533405
XM_026925823.2 mRNA upstream 21283 22497758 ~ 22499212 (+) True hes2.1
XM_026925258.2 mRNA upstream 103920 22411193 ~ 22416575 (+) True ybx1
XM_026925660.2 mRNA upstream 110691 22377928 ~ 22409804 (+) True ppih
XM_026925730.2 mRNA upstream 144030 22360790 ~ 22376465 (+) True exosc10
XM_034306780.1 mRNA downstream 10693 22594534 ~ 22636974 (+) False LOC113533432
XM_026925582.2 mRNA downstream 10694 22594535 ~ 22636974 (+) True LOC113533432
XM_026925584.2 mRNA downstream 10694 22594535 ~ 22636974 (+) False LOC113533432
XM_026925504.2 mRNA downstream 101661 22685502 ~ 22706507 (+) False kank3
XM_026925503.2 mRNA downstream 101662 22685503 ~ 22706507 (+) True kank3
trnaa-ugc_5 other upstream 830003 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 830399 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 830757 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 831904 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 832300 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 664507 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 930745 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1166576 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1427776 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1427776 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile