RNA id: XM_026925547.2


Basic Information

Item Value
RNA id XM_026925547.2
length 2847
RNA type mRNA
GC content 0.39
exon number 11
gene id LOC113533404
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8902248 ~ 8915811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacttgcCTTTGCCCACTTCTGCTCTGTCAGTGAGAAAACTCTAAAAGTTAAAATGTTGTTGGAACTTGCTGGTGTTCTGCACTTGATCTTTCTGATACACGCTCAAGGTTCCCCTTTTCAGAAACCCTGGGCTGTGACATGTGATGATGAAAGCATCTGTACATTGGAAACGTCGCATGTGTTCATTAagtgctcttacacacacatcaacatccACACTGTGATCTGGTTCAGTcctaaacagaaaaataaatggaagAATGAGAATTATCCAGAGGATCTAGCTTTGGACTCAGACTTTGCTGGGCGTGTGAATCACATAGAGACCCTAAACTCCAGCACGCTGTCAATAAGAGACGTGAGACTGGGAGACTCTGGAGAATATCGCTTCATGCTCGTCACAGCAAACGGAGAGAAATATCTCAGCTCGATAGCCGTGAATCTAACAGTGACagATCTGCAGGTGAGGATACATCCTGGCATCACAGAACAGGTATTAAATCTTACCTGTAGCACACATTGCAGACTGACTGCAAAATGGAACACCTGGTGGAAGAATGGCAAACGTATAAAAGCTCACCTAAATGCTGAGCCTCTTCTCTTATCTGCTGGTGATGGAGGCAGCTACTTCTGCTCACTCAAAACCAAAAATAAGGTGATCCATTCCCCTGCAGTATGTGTCTGGGAAAAGAATTGTTGGAATGTGATTTATGCACAGAGAAGAGTGTGTGCTTTCAAAGGTTCATCTGTGAACTTCCCCTGCACTTACTCATATCCCAGTGGACAAAAAGTCAATGAAAGCTACTGGATGTTCAATCAGAATGACGTGAGGCTCTTGGAGCAGTTTGCAGGTCGTGTGGAGTTTGTTGGAAATAAAGAGAATAACTGCACTCTAAGACTGACTGACCTTAAAGAGAGCGACTCTGGAGATTATCGCTTTCTCTTCACCACTGATACCACCCAGCCAGTCTTCAGTAGCTCACTCAGCATCCAGCTGATTGTTACAGaTGTTCAGGTCAGGGTGAGATCTGCCAACATGTCCGAGGGACAGACAGTAACACTGAGCTGTATCACCAGCTGTACTCTCCCTTACCATACATTAAGCTGGTACCAGAATGGCCAACGTGTAATGAACAAACTCACCAAACACAACAATATTTATCTGGATGTACTTAGCTACAAGGAAAAGGACAATTACACATGTGCTGTAAGAGTCATTGAAGCTAAGAGCTATACAGCAGCTTCAGGAGGTGATGGGTGGTGGATTCAGCATGCTATATGGGCAGGAGGGGGATTCATGGCTGTATTAACTCTACTTATTGCCGTTCAGCTTATCAGgAGGGCAAGACGAACAGAGAATGATACAGATATCCAGgCTGTAGAGGTTTCACTAACAGACACCTACACTTCTCTAAGCCCTGCAAACCGGTCCTCTGAGTACAGCACACTGTTTGCTTATTCAAGGATAACGAGCAGGACAGAAAGAGATGCACACAGTCAGgcTGCAAAGGCTTCGGGCAGTACGGTAGAGAGAAAAGTCTCAGACTCAGTGTATGAAAATGTAGAATGCAAGATGTAGAATTTAAGAACTGGTCCACATTCAATATACAAGTTTTGAACTGACCACACCACACATGATTTTAATTCAGTATGTAAAATGGAGTGTTAACAATTTAACTGATTGCAATTCCAAAATTTTGAATTGGGATTTAATCAATTCTAACATATGGTTTATAGTATAacctgtaataaaataatgtgtaatttatATCAAGTTGTTTCAATGTCAGcagtaaaacaacaacaaaataataattagtttaGCAGCAAAGAACATCCATCAGTTAAAAGTATACAAAAAACATGAATCTGGCACGTACAGCTATGAGACTTAAAGATAAGAATATAACGATACCAAAAATGATCAAACCAATACAAATCACAACACCTTAACTTGCGCAGACCATTTTAACATATTCTTTTAAGTCTTACTCCATgataaacaaatcaaacaatgatatattttaaaaaaaatacatgtgatatatgatatatatttatgtcATATTATATGTTTTGAATTCAATACATTTCAGTTTGATTTATATAGAGCTTTTTCACAATGGActttgtcacaaaacagctttacagatataaattgtataaatatgCTTACTTAAATTCAAATCCAAGGATGGTCCACATCAGATGTGACTGTATTTTTTACAATCCCACTCTCATCCCCTCCTGAAGGAATTACATTTTTGTATCTACCTGTGATATTTTCCATAAACCTATGCTAAATTggttctattttccaaaatataaacaaatatcaAATTAACACAGATTTAAACCACAGCGACCCTAATAAGGATAAAACATATATCGgagattaatgaatgaacaaaGTAAATGTGCCAGTGTTAATAAGCATTGCCTTTATTTATGGCCTTTATTTGCAGCATGGCcttgtgagcttcatatctgatctCACACTCCCGGCATCATGAGAGTAAAAATCCGTTCTCGAAGTACACCTCTAATATGCACCATACCTGAATGATAAACCTTTGTCACACCGCTCCATGTAATATGTCACTGATCCTCAAGAGGATCTTCCTCTACTGCCACTGGCTGATACCTCCTTTTTATCAGCGATTGTGATGCTGTGGACCTTTACTTTAATTTCGGTGTGACTGTTTGTCACCTTAATCTTGCACTGTTCCTTTACATTACCCTGCTGTTATTGTCTGCCTGTTTGAACTGCTTACCACTTTGGATCAGCTTTTTGGCTCTGGagtttgtgctttttatttaatttaataaagattCTTGCCATTC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152913 lncRNA upstream 176360 8725452 ~ 8725888 (+) True G129439
TU152914 lncRNA upstream 178178 8723664 ~ 8724070 (+) True G129440
XR_004578601.1 lncRNA upstream 185016 8679642 ~ 8717232 (+) False LOC117597837
XR_004578600.1 lncRNA upstream 185319 8679642 ~ 8716929 (+) True LOC117597837
TU152881 lncRNA upstream 352266 8549769 ~ 8549982 (+) True G129407
TU153099 lncRNA downstream 87658 9003469 ~ 9006553 (+) False G129621
TU153100 lncRNA downstream 87658 9003469 ~ 9006784 (+) True G129621
TU153191 lncRNA downstream 196973 9112784 ~ 9123869 (+) True G129704
TU153195 lncRNA downstream 204127 9119938 ~ 9134935 (+) True G129707
TU153299 lncRNA downstream 393692 9309503 ~ 9312451 (+) True G129805
XM_026912711.2 mRNA upstream 360822 8483083 ~ 8541426 (+) True ajap1
XM_034306375.1 mRNA upstream 360822 8483083 ~ 8541426 (+) False ajap1
XM_026926795.2 mRNA upstream 499701 8394989 ~ 8402547 (+) True LOC113534163
XM_026914400.2 mRNA upstream 600575 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026916892.2 mRNA upstream 779362 8117577 ~ 8122886 (+) True LOC113528372
XM_026916436.2 mRNA downstream 34403 8950214 ~ 9002824 (+) True sema3b
XM_026916445.2 mRNA downstream 34403 8950214 ~ 9002824 (+) False sema3b
XM_034306645.1 mRNA downstream 35181 8950992 ~ 9002824 (+) False sema3b
XM_026938816.2 mRNA downstream 250167 9165978 ~ 9169576 (+) True pym1
XM_026914409.2 mRNA downstream 259288 9175099 ~ 9180830 (+) True LOC113526950
TU152708 other upstream 589592 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 930499 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 1471251 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 1474691 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2106172 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 1442135 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 1640707 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1954323 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2706491 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2706499 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile