RNA id: XM_026925568.2


Basic Information

Item Value
RNA id XM_026925568.2
length 2177
RNA type mRNA
GC content 0.41
exon number 9
gene id bin3
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25563821 ~ 25606864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgcactacttTTTGAACTGGTCTCCTATTGGGACTCTAACCCTAGACAACTTCCTCAGTTCCTGGTTACAGAGTTGTAGCTGGACAGGTAGAAAAGGCGATGTTTTTGGAAATAAAGTTGTGTTTCGCGGTTAAACTGGAGTAAACACCACACCATGAGCTGGATTCCATTTAAGATCGGGCAACCGAAGAAACAGATTGTTTCAAAGACGGTTGAAAGAGACTTCGAGCGGGAATATGAGAAGCTCCAGAAGTTGGAAGACCAAACAAAGAAGCTGCATAAAGACATGAAGAAAAGCACAGAGGCTGATATAGcaatGTCTAAAGCAGCTGTGAAGATCGCTGCAGACCTGCTGAGTAACCCGCTGTGCGAGCAGGACCAAGCCTTCCTGGAGTCTATGATGTCTCTGGATACAGCCATGAAACGAATGGAGGCATTCAACCAAGAGAAGgtCAATCAGATTCAGAAGACGGTGATTGATCCTCTAAAAAAgtacAGTAGTGTGTTCCCCAGTCTGAACATGGCAGTGAAGCGGAGAGAGCAGGCCTTGCAGGATTATAAGCGACTGCAGGCTAAAGTGGAGAAAtatgaggagaaggagaagactGGACCCATCATGGTCAAACTCCATCAGGCAAAGGAAGAGTTGAGGCCAGTCAGGGAGGATTTCGAAGCCAAGAATAAGCAACTGTTGGAAGAAATGCCCAAATTTTACAACAGCCGCATCGACTACTTTCAGCCGAGCTTCGAGGCGCTTATCCGAGCCCAGgtgGTGTACTTCACAGAGATGCACAAGATCTTCAGTGACCTGACAGATCAGATCGATCAAGGCGGCCTGACAGACCAAGAGCGAGAACAGCAGAACGAGACCAAGCTCAACGAACTGCGTGCTCTGTCTATCGTAGCAGATGACTGAAGAAAAAGCAGATCTCTCTTTGCcaggtttttttcctttatttgttcCATCAGATTGTTTGTCAATGATCAGACGTCAGTGGTATGGATTACCGAACGGCAGTGTAGATGTAATAAAGATGTAGAGAATATAACTTATTTGTTTTTCGACCTCCATTCTGAAGGTTGCTCTTCATCAgtctgtttatcttttttatctttttgtgATCTGGGTTATGGTTAGATTTCCAGTTTGTTTCATGATGATggtaaaaaaaagaggaagccTTCCTCAGgaatatacactacactatattaaCTTATACGAAGGGAGCTCAATTTCTGAAAAGTGAAGGATCTCACTGGTGAGTAGAACATCACTGCAGTTGTGCTTGTTCTTTAGGTATAAATTGTATTGAATGTACAGAAAAGGCAATACTTGACTAGAGCTTATCATTAGGAATCATGGTGTGTATGTCAAATGCGTGTAGCTCTGGCCTTTGGTCTGAGCACTAAACCCTGTCGTTTGCTCTAACGTCCCAGTCTGCGCACCATCACAGCAATTCTACAGCTCTTtctgaattaaaacaaaaaaatcatctctAAGTAAGCGATATCTAGTAATTTAATACTAGCatgaagtatttatttattgtttattgagTATTTAAATGGTGTCTGTAGTGAATTAAATTTGAGTGTGTGtcatattaaaatgtgttaccCGGTACTGTAGCGCCCTCTACTGACCcaaacaaaacactgaatttGCTCGTCTTTGTGTGTAGTGGTTGTAACAAAGTGTGTACTTTTTTGGCTACAGCCATAGAATTTCGGATTTTGGATGATGTACGATTGTATGCGGGACCAACCGTTGAAGAAGCCACAGCTATTTTCTTTCCTAATGTTACTTCACATCGTCGCCAAAGGAATAATGTTGAATTTTGAAGAGTTTTGGttctttgtgttttcagtgCTTCATCTCTGTCTTTAACAATGCCTCCATGTAATTTCTGTTGAAATATGTGCCTTTATATTCAGGATTTGGATTCTGACTTGTGACTGTCCTGATATCTGATCATCTCTTACTGCATTCAActctttttaatttgtttaccTGCTAAAACAggaggtttttgtgtgtgtattttaggaGTTGCGTTTGCTTCTTTGATTATAATTCTATGTACGTTTTAATTCTTATCATTTGTATTGATcacttttgtatttgttttgcaAAGTCGTACAATAAATTGGTTGTTGGTAAAAACCTGAAATAGAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20120 BIN3; bridging integrator 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164300 lncRNA upstream 5156 25557340 ~ 25558665 (+) False egr3
TU164115 lncRNA upstream 112244 25448615 ~ 25451577 (+) True G138961
XR_004578605.1 lncRNA upstream 135633 25421054 ~ 25428188 (+) True LOC117597843
XR_004578607.1 lncRNA upstream 230208 25309905 ~ 25333613 (+) True LOC113533374
XR_004578606.1 lncRNA upstream 230208 25309905 ~ 25333613 (+) False LOC113533374
TU164343 lncRNA downstream 65654 25672518 ~ 25683091 (+) True G139166
TU164350 lncRNA downstream 203311 25810175 ~ 25815041 (+) True G139172
XR_004578613.1 lncRNA downstream 341985 25948849 ~ 25950449 (+) True LOC113546140
TU164434 lncRNA downstream 425730 26032594 ~ 26036133 (+) True G139235
TU164785 lncRNA downstream 793327 26400191 ~ 26423694 (+) True car15
XM_026925935.2 mRNA upstream 5090 25551894 ~ 25558731 (+) True egr3
XM_026925668.2 mRNA upstream 20233 25453639 ~ 25543588 (+) False LOC113533497
XM_026925669.2 mRNA upstream 20233 25453819 ~ 25543588 (+) True LOC113533497
XM_026925667.2 mRNA upstream 20235 25453822 ~ 25543586 (+) False LOC113533497
XM_026925355.2 mRNA upstream 116947 25435201 ~ 25446874 (+) True LOC113533297
XM_026925487.2 mRNA downstream 55930 25662794 ~ 25665298 (+) True b2ml
XM_026925224.2 mRNA downstream 60061 25666925 ~ 25671900 (+) True ubl4a
XM_026925535.2 mRNA downstream 79341 25686205 ~ 25703125 (+) True si:dkey-32e23.4
XM_026925537.2 mRNA downstream 79341 25686205 ~ 25703125 (+) False si:dkey-32e23.4
XM_026925536.2 mRNA downstream 81568 25688432 ~ 25703125 (+) False si:dkey-32e23.4
trnae-cuc_21 other upstream 292141 25271609 ~ 25271680 (+) True trnae-cuc_21
TU163200 other upstream 1550095 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 1550095 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 1806707 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 2039845 23514586 ~ 23523976 (+) False pabpc1l
TU164394 other downstream 302711 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 309226 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 847608 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 847758 26454622 ~ 26457276 (+) False car15
trnaa-agc other downstream 869414 26476278 ~ 26476350 (+) True trnaa-agc

Expression Profile