RNA id: XM_026925600.2


Basic Information

Item Value
RNA id XM_026925600.2
length 7333
RNA type mRNA
GC content 0.47
exon number 19
gene id adgra2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24632224 ~ 24691440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCGACAGGGTGGCGGAGGAAAAGCGCTGCAGGGGTATTAAGGGGAGTTAAGCTCGCGCCGGAGTACCGTTACTCAGGAGCTGCACGCTATGAAGAGCGCAGGGACAGTGAGCGAGCGCAGGCTGGAGGGACACGCAGGCTGCATGCGGACTTCCAGCTCTGAGCAAACGCGATCTTCTGTGTGAATTAACCAAAAAATGCGGGAGCAAGTTCTGCGGAATCACGAGTCGTGGCTGCTTTCAGAGCCCAGAGTAACTTTTTAAGTCTTGTCATCACTTTGGATTCTGATTCGCAGCGGAGTAACACTTTTCTTTCCTGCAGGTTTTTTATCTCTTGCCACACAGCGCTTGCACATCTTGAGGAAGATATTTTGAGGATGCGTTTGCGCGCAGAAATTCGCTTGGACATGACGGATCACCGTCGTGCTGCATTTTCCTGACTGACGCACTGAGCTGCACGCACTTAGTGATGGAGAGACGCGGTCATGCAAGCTGAGGCGCGCGCAAGTGTCAAATCAGTGTAGAGAATAAGGAATTCGCGCGCAGGTTTTAGCagtgcagcagtgctttaatcCTCTGATCAGACTTGCCTAAGTGATTCATGTGAAAAGGCTCGCGCTGATGACATGGGCTGACTTCGTGTCACCGAAAAGGGACCGACGATGTTGCGACGCAGCGCGCGCGTCTCGTTCCGCGGCCGGTCGCTGCTCGTGCTcttgctactgctgctgctgggatTTGCGCGAGCCTGTCGCGAGCTTCTCTCCAGCGGCTGCAGTTGCACGGACGAGCGCGCCAAGGGCCACACGGCGCAGGCGGGCGCGCGCAAACGAGTGAGCTGCGCCGGCAAGGAGCTGACGGAGACACCGGAAGCGAGTCTGATGCCCAACCGGACCATTTCTTTAAACCTAAGCAACAACCGCATCCGAGTCCTGAGAAATGGCTCCTTTGCTGGCTTGTACTTGCTGGACAAACTGGACCTGAAGAATAATCTGATCAGCACCATCATGCCTGGAGCTTTTCAGAGTCTAACAGCACTGAGAAAACTTGACCTGTCCAACAACCGGATCGGCTGCCTGACTCCAGATATGTTCCAGGGACTCACCAACCTCACCAAACTgaaCATTTCGGGAAACATCTTCTCTTCTCTGGAGCCGAACATCTTCCAGGAGCTTCCCTCACTGAAGCTGgtGAACTTCAACTCTGAGTTCCTGTCGTGTGACTGTGGCCTGCAATGGGTGCCGGGTTTCTTTCACACAAGTTCAGCCAGACTCGGAGATGAGACGTTCTGCACGTATCCCAGAAGGTTCCAGAACAGACGACTGCGAGAACTAAAGGAGAGTGACCTGACCTGTGAAGGGCCCTTGGAGCTGCACACTCTGTTTCTGTTACCCTCACTGCGCCAAGTAGTGTTTAAAGGAGACAGGCTGCCGTTCCACTGTACTGCTGCCCGGGTGGACCAAATCACTGCCGTATACTGGCGCCACAAAGGCCAAATTGTCAGCAACAACCCTGAGAATGGAGTTCTTCTAGAGGAGAGTGTTCTACACGACTGCACTGTCATCACCAGCGAGCTGATCTTGTCAAATGTGCACGTTGATGCTAGCGGCGAGTGGGAGTGTGTGGTGACAACAGGACGAGGGAATATCTCACGTAGTGTGGAGATCGTGGTTCTGGAAAACAGCGCCACCTTCTGCCCTGAGCAAAGAGTGTCCAATAATAGAGGAGAGTTCAGGTGGCCGAGAACTCTGGCTGGAATTACTTCATATCAGTACTGCCTGCAGCTGCGTTATCCATCCCTGGCTGGAGGGGGTGCTGTTGATCAGAAGAGGGCGTCTCGCTACTGTGATCGCTCTGGTCGCTGGGAGGAAGGAGACTACTCTCAGTGCCTCTACACCAATGACATCACTAATGTCCTTCATACATTCATACTGATGCCCATCAACGCCTCCAATGCTGTGACACTGGCACACCAGGTGAGGACATACACGTTGGAGGCAGCAGGCTTCACAGACTCAGTGGATGTGTTCTATGTGGCACAGATGATGCAAAAATTCATGGATTATCTTGATCAGTCACGTGAGCTGGCAGAAGTGCTGGTGGAAATGGGAAGTAACCTGATGCAAGTGGGTGATCAGATCTTGTCCCAGGCTCAGAAGGAGAAGAGAGCATGCAGCACTATAGTCAGCTCTCTGGAGACCTTAGCATGGCCACAGCTTCACCCGAATGCCCAGGATCTCTCAATGATATCTCAGAACATCGTGATGGAAGCTCACTTGATACGCCCCGCCCACTTCACTGGCATGACCTGCACCGCCTATGAGAGACGAGAGAGCTCTGGTGCCAGTGGATTAGATGTGATAGAGTCCACCAACGAGCAGCAGTTACACTTCCGTTGCACAACAGGAACCCACAACATGTCACTAACCGCTTTCCCTTTAAAGAATGCTGTAGCACTTGCTtcagtctctctccctccatccctgtTCCCTCCAAACGCTCCTACGGACTGTAAACTGCAGTTTGTGGCTTTCCGTACTGGAAGATTCTTCCCATTTATTGGAAACTCCAGCAGCGCAGCTCGTAGGAGGAGTGTGAACACACCGGTCATCTACGTAGGCCTCGATGGATGCACCATGTGGAACCAGTCAGCTCCCATCGTTGTGTCGCTGCGTCACACATCACCTGGTAACGATCCAGTGGCTGCACACTGGAGTCTGCAGGCACTCAAGCATCATGGGAGTTGGAGTACAGATGGCTGTCAGTTAGCTCACAGTGACGCTACCATCTCAACGCTACGGTGCACCCTGCTCAGTAACTATGCAGTGCTTCAGGAGGTGCCTGATTTTCCAGGTCTGGCTCCTGCACCGGTGGAAGTGCTCCACCCGGTGGTGTACACCTGCACTGCAGCGCTCCTCCTGTGCCTCTTCACCATCATCTTTACGTACATACTGCACCACAGCTCTATTCGAATTACTAGGAAAAGCTGGCACACCCTCCTCAACACCTGTTTTCACATTGCCATGACGACTGCAGTGTTCGCTGGGGGCATCACTCTAACTAGCCACCCAATTGCGTGCCAAACGgtGGGCATTGTTCTCCACTATTCTTCACTGTCCACTCTGTTGTGGATCGGCATCAGTGCACGGGTGCTCTATAAGGAGGCCTTGTGGCGTTCTCCACGGCAACCAGAGGGCGAGGCTACAGTGGTGCCCACTCAGCGGCCCATGCTCAGGTTTTATTTGATAGCCGGCGGCGTTCCTCTCATCATATGCGGGATCACTGCAGCTGTCAATATTAACAACTATGGGGACAACATTCCTTACTGTTGGTTGGTATGGCAGCCCAGTATTGGAGCTTTCTATGTTCCTGCTGGCCTGGTGATCCTGGTGACCTGGATCTACTTCCTGTGTACCGTGGCGCGCTTGAGATGCCGAACCTCCCAGAGTGCCAAGGAACCTCCATGCTCCACCTCCGGATCCTCTCCCTTACCTGAAGCCCAGCCAGCTCTAAGTGGCAGCACTAGCTTACTTTCAACAGACTCTGCAGTTGACCCAATGCATGCTGGAATGGTGCAGGAGGACCAGTACTCACTGAAAGTGCAGTTCTTGGCACTGGTGGCGActcagtttgtgtttttgcttcTGTGGTGTTGCGGTGCGATGGCTATGTGGCAcatggacagagagaggaagttaTTCAGCTGCCTGTATGGAGGAACGGCAACAGGGCTGGGAATCTTCTTGGTGCTCCATCACTGCTTCAAACGCTTGGATGTCCAGGCAGCTTGGCTTGGATGTTGCCGGGGGTACCATCGCTCACAGCCGATTCCAGCCTACAGCCAACCCTGCACTGCCACCGCTGGAGTCCAGAGCACTTCTGAAAGGGGCTCACAAATTTTTGTTGGCTCTCTTCCTCCAGCAGAGCAAAGCAACTACTCTTCTTCTGCCAGGTCGTCCTCCACACCGAGTGGCACCAGCAGTATCGGCACTGGACCCTGCAAGCTCACCAACCTTTTGCAGGTGGCGCAGGACAATGCCAACAACGCTACACGTGCTCTGGCAGGCACCAACACCAGTACCAGCACGGAGAACAACACCAACAGCAAACCTGCTAACAATCTGCTGCTGCCCAGTATTAGCACCTCACTACCTGTTCAGCAGCAACAACGAAAAAAGACTAGCAGTAGAACTAAGGCAGGGAGTGGCCAGTACCACCACCGGGGGGAGGGAAGGGGACATTATCGTCTGAAAGCACTAAGAGGGGGTGGGGGCAGTGTAGGTGCCTTGGGCCCACCCGGGGTGGACCAAGTCaacattcatcatgttcacagATATGCATCCAGTGAGAATGGAAGTCTTCGAAACAGCCATTCGGAGAGCCATAATGGTCCGCTGACCAATGGGAGACACCGCGGGGAAGGACCAGGAACAAGTCCTTCGGAAGGAAGCGATGGAGGAAGCAGTGGAAGCAGGAAGCCTTTCCCACTTTTGCCTTCTATAGCAAGTCGGGTTGCAATGCAGCAGAATGGACAGAGGCGCAGTGCAAGCAGGGACAACCTTAAATTGGTCACTGCGGCTGATAAAGACTTTAAACGAGGTTCGTATCCGTTGAACACTGACACCATAACAGTTACCGGAACTACAAGCGGCACAACCTCATCAACGCTACCTGCCACATCAAATGGAATGCTAAAAGGTTCAGTGATCGAACTGGACGCAAGTGGATCGGACCATTCACAGGGGTCCATTGGGATGAGGCCTGGGGTTTGGAAGAGTGAGACGACGGTGTGATGGCGACATAAGTGAGCTCTAGCTAAACCACCTAACATTATGTGTTTAGGGAAGAGTACGGCGGGCAAGAGTCTCACAGCACCAATCTCAAGTGAAACATGTGGTTTCCTCCAGGATTAGCCTCcctgacattttattttcagtaatgttCAGTGAGCTTGAAACAATTTGCACCTTCCAGAAACATACCAGAACATTTGCCAGATACTACTCATGCATTTGTTGAGGTTTTATGAGGGATCCTGTAGATTTTGGTGCCAAATAAAGCAGGAGGCTTGTTGTTTAGGCCTTGttgtattgttttaataaaaaaatgaagggaTATACATATATGCAAAACCTGAACCCTTTCCAAATCAGTATTTTTCATCATGAAATGGTGCCACAGTACTGTTTCGCTGTGATATGCTTGTTGTTTAGAATATATCTAACATGAGGTTTAAAAGCTATTGCTAAAAAGTGAACACCTTACGGTATCTGTAAGCttaaactttttatccattttgatCTATGCATATCAGTGGAAATAGACCACAAAGTGCATTCCGAGttcattttgcatttgtttgcttgtacaacctttttttttatacttaatgTGTTTGTCGTGCTTTGTGTCTGCTGGTTATTTGGCGAACGTGCACATGTGATAGTGAGAGATGTATATGTcagaatgtatgtatgtaagaaTGTATGGATGAATTAATTGACTATTACAGTATTTAGCTCTGTTCCCTCTCCAGCACTGATAAATACCTCTTGGCCTTACCTAATCGTTCCAGTATTAAGGACTTGCAGTGAGTTCACTTCCTCTCCATGCTTTATTTGTGGAATACGTTTTGGCACTGGGGGGATATTGgtctttttttctgcagatgAGTCTGTTGTAAAGCAGGAAATAACTCAagtatgtgtgttattactgtCCCTCTTCTGTGTCAAAGGTCAAGATTATAATGAAAAACACAGGTCTagactgccctctagtggatcACTCATGCCATTTATCAAATGCACTGCCAAACCAAATATACCACCAAGTGATAAAGGCTATAAGTGGTGATTTCACTATGGTTGGATTGAAAGAAATTTGGGtggagaagatttttttttttttttgtaatcatgTTTAACATGGTTTTCCCGTAGCACTTGGAAAAAGTCCACTCTTTCTTACACCTAAATGAAGCACAAACTATGTATTAGCAGATTCAGGGTATTTTTCTattctctatctatctttttcccttctcttttcctttctttctttcttgtagtCCTCTCTtaatctttctgtctttctttctttctcaggcATATTCATTGCCACATGTTGTTCACTGCTAAAATCTACCTATATTttctctgattgttacaaaatatacagtcccccctcccaaaaaaaaaacctaaccaACAAAAAGTATCCTTTGGAAGGGGCTATTTGAAGAAACCAGGCTCTAGACATGATGGAACCATCTAGATTCAACCATTCATCAGGCAATACAGTGTAgcagtgtaatgtagtgtaatgtactGTCTAAATGGGAGCACTTAGACCTAACTGAacccaactttttttttttaatacagttttaaaaagaaaagaaatagtaCCCCTGGTCTAAAGGGGGAAAACAGTGTTAGTCACAAGAcaatcatttcatttacaaGTCCTGCATTATGCCAAGAAGTAGCTGTTCTTATTTATAACATCATATGCAATTTCATCTTAATGACAGGatgccatttttgtttgttttttttcccatatctTGAATCTTTCTTAGAGTAAAATTACCAGCTCTGCTCTTCACACGTGTTCAGGGATTTTTGACACCAAAGAAGCTTCTTTAAACATCTTGTTACAGTATTTGTAACGTTTTCTCTCTTCAGACATCACAAATCTCCCAAAAGTGTCACAAATTGGACAAGCagttattaaatgttttgtaatatcaatatttattatagtgTATGTCACAAATaagatgtgcttttgttttattgcaTGTTGGATTCCAGTGAGTTTTATTAGTGACATGATGGTGTGTAAGGGTGAATTATCcttttaaaaacagacatgacttagtgtgatctttttttttttaatcaccaaACGACTGCATTAGTGGTTTCCATGGTTTCCGAATTGAAGTTGAATGGAAATGTGATGTTTAAAGGTGTATAAAGCTAATTATAAAAAgcatttgtattgtttttgaaTGATGTATGGACTTGTTTGTGTGCAACGGTTTAACAAGCcatgtgatcttttttttttttttttttaaattttgatttaCAGTCTTCTGTCCCTATGCATGAAGTTtttggtcagtaaaaaaaatcagtaggcTATTTATCTAATAATGATTGTTTCTACTGTCATCTCGAGTTTTTAAAGGGatatttcatgtttcatgtgtatttatatgtcaCTTTGCATCAATATGAAAGTTCCTTTTCAGTTCCAGTAATATATTTGCTGTTTGTGCCTTATAAAAATTCTGATGCAAAATAAAGACTTTCTAAATAC

Function

GO: NA

KEGG:

id description
K08461 ADGRA2, GPR124; adhesion G protein-coupled receptor A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163604 lncRNA upstream 129853 24502086 ~ 24502371 (+) True G138535
TU163307 lncRNA upstream 268463 24362949 ~ 24363761 (+) True G138280
TU163261 lncRNA upstream 507655 24121610 ~ 24124569 (+) True G138239
TU163191 lncRNA upstream 642127 23989898 ~ 23990097 (+) True G138176
TU163176 lncRNA upstream 737508 23890430 ~ 23894716 (+) False praf2
TU163669 lncRNA downstream 39547 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 60600 24752040 ~ 24754872 (+) False LOC113533328
XR_004578578.1 lncRNA downstream 61101 24752541 ~ 24783425 (+) False LOC113533328
XR_004578577.1 lncRNA downstream 61229 24752669 ~ 24754872 (+) False LOC113533328
XR_003403403.2 lncRNA downstream 156628 24848068 ~ 24849544 (+) True LOC113533216
XM_034306727.1 mRNA upstream 8068 24561931 ~ 24624156 (+) True pdlim2
XM_034306723.1 mRNA upstream 8068 24562377 ~ 24624156 (+) False pdlim2
XM_034306725.1 mRNA upstream 8068 24568287 ~ 24624156 (+) False pdlim2
XM_034306724.1 mRNA upstream 8068 24568447 ~ 24624156 (+) False pdlim2
XM_026925018.2 mRNA upstream 73196 24511732 ~ 24559028 (+) False sorbs3
XM_026925262.2 mRNA downstream 1897 24693337 ~ 24712086 (+) True rab11fip1a
XM_026925769.2 mRNA downstream 187346 24878786 ~ 24925439 (+) True vps13a
XM_026925772.2 mRNA downstream 187346 24878786 ~ 24925439 (+) False vps13a
XM_026925771.2 mRNA downstream 187346 24878786 ~ 24925439 (+) False vps13a
XM_026925775.2 mRNA downstream 187346 24878786 ~ 24925439 (+) False vps13a
TU163200 other upstream 618498 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 618498 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 875110 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1108248 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1372771 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 580169 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1218135 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1224650 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1763032 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1763182 26454622 ~ 26457276 (+) False car15

Expression Profile