RNA id: XM_034306881.1


Basic Information

Item Value
RNA id XM_034306881.1
length 5018
RNA type mRNA
GC content 0.50
exon number 27
gene id slc12a5b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23573322 ~ 23640225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcctccttgctggacagagcagcagcagcagcagcagcggagGCAGCGGAGGCAGCGGCAGTGCACCAGCAGTGATAGTGGGAGCTCTGGTCCTCTCTCTCCCAGAAGATGCTCAACAACCTAACCGACTGCGAGGAGGGGGATGGGGGCACCAACAGCCAGGGAGATGGAAACCCCAAAGAGAGCAGCCCTTTTATCAACAGCAGTAGCAGCATTGACATTGAGAAGAGCCAGCAGTATGATGGCAAGCACATGGCCCTGTTTGAGgagGAGATGGACACGAGTCCCATGGTGTCCTCTTTACTCAGCAGCCTTGCCAACTACTCCAACCTGACGCAGGGCAGCAAGGAGCATGAGGAGGCTGAGAATAATGAAGAGGCCCGCAAGAAAGCAgtgcagGCTCCTCGTATGGGCACGGTGATGGGTGTCTATCTGCCGTGCATGCAGAACATCCTGGGGGTGATTCTCTTCCTCAGGATGACATGGCTGGTGGGCATCGGAGGCGTCCTGGGCACCTTCCTCTTCGTCTTCATGTGCTGCTCAACGACTATGCTGACTGCCATTTCAATGAGTGCAATTGCTACAAATGGAGTAGTGCCAGCTGGTGGTTCATACTATATGATCTCCCGCTCACTGGGGCCGGAGTTTGGCGGAGCAGTGGGCATCTGTTTCTACCTGGGAACCACTTTCGCTGGAGCCATGTATATTCTAGGCTGCATTGAGATTCTCCTGATCTACATTGCTCCACAAGCGGCTATATTTCAGATCGAAGGTCTGGATGGACCTGAAGCCGAAGCTGCAATGCTCAATAACATGCGTGTGTATGGCAGCATCGTTCTCTCCTTCATGTCTGTGGTGGTGTTTGTCGGCGTGAAGTATGTCAACAAGCTGGCGCTGGTTTTCCTCGCCTGCGTCATCCTCTCCATTCTGGCTGTTTATGCTGGTGTCATCAAAAGCGCCTTCGACCCGCCAGACTTCCCGATATGTGTGCTTGGTAATCGGACTCTGGTGTCTAAGGGCTTTGATATCTGTGCAAAAACCATCGAGACGGGCAATGGTACAGTTACCACCAAACTCTGGAAACTGTTCTGTGACTCTGAGTTCCTCAACGCCACCTGTGACGAATATTTCACCAACAACAATGTTTCTCAGGTGCAGGGCATTCCCGGCATCACCAGCGGCATCCTGGCAGAGAATCTCTTCGGCACCTTCATGCAGAAGAATGACATCTTAGAGAAGCGAGGTATTCCTGCCGTGGTTGACCCCGACACCCCAATAACCAACACTAACCGCTACGTGTTAGCCGACATCACCAGCTTCTTCACCCTGCTGGTGGGCATCTATTTCCCCTCTGTCACAGGTATCATGGCTGGCTCCAACCGCTCTGGTGACCTGAGGGACGCTCAGAAGTCCATCCCCATTGGCACCATCCTGGCCatctccaccacctccaccataTACATGTCCTGTGTGGTTCTGTTTGGGGCCTGTGTAGAGGGAGTAGTGCTGAGAGACAAGTTTGGTGAGGGTGTCAGTGGGAACCTGGTCATTGGTACACTGGCTTGGCCCTCCCCTTGGGTCATCGTGTTTGGTTCATTCTTCTCCACCTGCGGGGCGGGGCTTCAGAGTTTGACAGGAGCACCTCGTCTCTTACAGGCCATCGCACGAGACGGGATTATCCCCTTCCTCAGGGTGTTCGGTCACGGGAAGGCTAATGGTGAGCCCACATGGGCTCTACTTCTGACAGCCACCATATGTGAGATTGGTATCCTTATTGCCTCTCTGGATGCTGTCGCACCCATCCTCTCTATGTTTTTCTTGATGTGCTACATGTTCGTGAACCTGGCCTGTGCTCTGCAGACGCTCCTCAGAACGCCAAACTGGAGGCCACGCTTCAAATTCTACCACTGGACTCTGTCCTTTCTGGGTATGAGCTTGTGTCTCTCCCTGATGTTCATCTGCTCTTGGTACTATGCCATCGTGGCCATGGGCATTGCAGGCTGCATCTACAAATACATCGAGTTCTGTGGGGCGGAGAAAGAGTGGGGCGATGGGATACGCGGCATCTCTCTCAGCGCTGCCCGTTACGCTCTGATGAGGCTGGAAGAAGGACCGCCTCACACCAAAAATTGGAGGCCTCAGATCATGGTGCTGGTTGGTTTAGATGGCGAGCAGAATGTGGAACAGCCACGCCTCCTctcactgaccaatcagctgAAGGCAGGCAAAGGCTTGACCATCGTGGGTGCTTGTGTTGAGGGCACATACCTTAACAaccacacacaagcacagaaaGCTGAACAGTCCCTGAGGAAGctgatggagacagagagggtGAAGGGCTTCAGTCAGGTGGTGATCTCATCCAACCTGCGTGATGCCACCTCTCATCTGATCCAAGCCGGAGGACTCGGTGGCTTACGCCACAACACTGTGGTCATCAGCTTCCCGAAGAACTGGAAGCAGCACGAGGACAACCGGCAGCTAAGGAATTTCATTGaGGTTGTGAGGGAGACCACAGCGGCTCACTTGGCTCTTCTGGTGCCAAAGAACATCGCTGCGTATCCGTCCAATGGCGAGCGCTTCACTGAGGGCCACATCGACGTCTGgtggattgtccatgatggagGAATGCTTATGCTCCTGCCGTTCTTGCTGCGCCAGCACAAGGTTTGGAGGAAGTGCAAAATGCGCATCTTTACCGTGGCTCAGATGGATGACAACAGCATTCAGATGAAGAAGGACCTGATGACCTTCCTCTATCACCTGCGACTCGATGCtgaggtggaggtggtggagatGCATGACAGTGATATCTCAGCTTACACCTATGAGAAGactctggtaatggaacagaGGTCACAGATCCTTAAAGAGATGCACCTTACCAAGAacgagtgggagagagagATTCAGAGCATCACAGACGTGTCCCGTGGCTCCATCCGCCGGAAGAACCCATCTAACCCACATCCACAGAAGAACATCAGTGAGGAGCCTGCAGGGGGCAGTACTGAGGAGAAACCAGAGGAAGAGGTACAGCTCATCCAAGGTAAGAATGCCACGCCCACCCCGACAAGCCCCGTCTCCCTGACTCCTGCGGACAAAGGGGCCATGAGCCCCAGTGAGGAGGTGCAAATGACCTGGAGCGATGACTTAGACAAGTCCAAGAATCCATCCGTGGCCAATCCGGAGACTACTAAAGACATGTTTAACATTAAACCGGAATGGGAAAACCTGAACCAGTTCAATGTGAGGCGCATGCACCATGCGCAAAAGCTTAATGAAGTGATTGTGAAAAAGTCACAAGACGCAAAGCTAGTCCTGCTAAACATGCCTGGGCCTCCCAGAAACCGCACAGGAGAAGAGAACTTACTACAGAACAATATGACAAATCCTAGAGAGAATGCCGTATACCGGGACTATACCTTTTTTGCCGATATCCAGGTGATGATCTTCATTGGATTTGGCTGCCTTCTAGCCTTCTTTAGGCGCTATGGATTTGGTGGAATGGTTTTTAACTTCCTGATTGCTACATTTGCTATTCAATGGGCCATTTTGGTACAgggttttttccatttttactaTGATGGGAAGATTCATCTGGGAGTGATAAACCTGATCAATGCAGAGTTTGCTTGCGCTGTTGTACTGATCTCATTCGGGGCAGTGCTGGGGAAGACCAGTCCTGTGCAGCTATTAATCATGGCTTTGTTGGAAGTTCCAATCTTTGGTGTTACAGAATGGATAGTCCTTACATACCTGAAGATTAATGATGCCGGAGGTTCCATTCTCATCCATCTGTTTGCCTGCTACTTCGGTCTAGGTGTCACTTTCATCTTGTATAGACCAGAACTGAATGACAGCCATCCCAATGAGATTACCAGCTATCATTCTGACTTGCTTTCGGTGCTAGGTACCCTGTTCCTTTGGGTATTCTGGCCTTCCTTTAATTGTGCCTTGACTCTGAGGGGGGATGACCAGCATCGCGCCATTCTGCATACTTTTATAGGACTGAGTGCATCCACATTAACTGCCTTTGCCCTCTCTGCCCTGCTCAACAAAAATGGCAAGTTCAGCATGGCTGATGTGCAGAATGTAACCCTGGCTGGTGGGGTCACCGTTGGTGCCTCAGTTGACATGATGATCTCCCCTGTTGCCGCTTATGTGCTAGGGATGCTGGGTGGCATGGCTTGCATGCTGGGCTATAAGTACCTTAGTCCTTTCCTGGCACAAAGATTGCATGTGCAGGACCAGTGTGGCATCCACAATCTCCATGGCCTAACCGGGCTTATCTCAACTCTAGCTGCTATTTGTGCCATTCTCTTGGCCAGTGAGGAAACATATGGCCCCAGCCTCTACCAGACCTTTTTATATCGTGCACCCCAGGTTGGAGATCCTCGGTTGGAGGAATTGCAGAAATTGATCCCAGGATTGGAGGGAGGTCTGGGACGCACTGCACAAGAACAAGCCTTGTACCAAGTGGCTGCACTAGGAAGCACTATTGCGATAGCCATAGTGGGGGGGGTGCTGACAGGACTTGTGCTCAGGTTGCCATATCTGGCCTCCCCGACTGATGTGTTCTGCTTTGATGATGAGCCTTTCTTTAACATTCCTACAGATCAGGCATATATAACTGAGACTGAGAAAGATATATCACTAGAACATGCAAATTAGTAAATATATCatgatgtatttcattttaaataaagtatatctTTCTTTTCACTACAAGGCAATAACCCTTTGatagaaaatgtgttttaattgttGGCCCTTTTCATCTTGTAATCAGATCCTCATTCATTTAGCTAAAGTTAGCTTAAAGTTAGattaaacatctctctctccaacttgcaataattttttttcaaggtgATTGTGTAACATGCTACCACAAGTTGAATTACTTGcagtctctcactcactgttAATTAGTTAAACTCATGGTCCCATGACACATAGGCAGGgactaatttttatttttatttttacagtggtGGACATCACAACcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162558 lncRNA upstream 311331 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 312625 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 315924 23248597 ~ 23257398 (+) False tprg1l
TU162543 lncRNA upstream 413815 23095798 ~ 23159507 (+) True G137650
TU163000 lncRNA downstream 107238 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 250205 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 349673 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 481385 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 722724 24362949 ~ 24363761 (+) True G138280
XM_026925085.2 mRNA upstream 26664 23534596 ~ 23546658 (+) True eif2d
XM_034306308.1 mRNA upstream 27596 23534596 ~ 23545726 (+) False eif2d
XM_026925106.2 mRNA upstream 48617 23514586 ~ 23524705 (+) True pabpc1l
XM_026925107.2 mRNA upstream 48617 23514586 ~ 23524705 (+) False pabpc1l
XM_026925108.2 mRNA upstream 48617 23514586 ~ 23524705 (+) False pabpc1l
XM_034306691.1 mRNA downstream 2616 23642841 ~ 23651142 (+) True rbm39b
XM_026925342.2 mRNA downstream 2616 23642841 ~ 23651142 (+) False rbm39b
XM_026925424.2 mRNA downstream 42032 23682257 ~ 23703120 (+) True zgc:162200
XM_034306861.1 mRNA downstream 65843 23706068 ~ 23711315 (+) True si:ch211-218o21.4
XM_026925663.2 mRNA downstream 71417 23711642 ~ 23720857 (+) True renbp
XR_004578528.1 other upstream 49346 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 313869 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 1882830 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1883226 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1883584 21689667 ~ 21689738 (+) True trnat-cgu_3
TU162995 other downstream 110192 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 371392 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 371392 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1631384 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 2269350 25909575 ~ 25916798 (+) True LOC117597866

Expression Profile