RNA id: XM_026925626.2


Basic Information

Item Value
RNA id XM_026925626.2
length 2972
RNA type mRNA
GC content 0.50
exon number 19
gene id cdk11b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21438250 ~ 21456723 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTGTCCACTAGATGGCAATAATTACCTAGCAACCCGTCTGTTACCCGGAACTACTTTCAGACGACAGAACGTAGCATTTTGTTTTTCCGGTATTTTAAAAACGCGCCGAGTAACTTTCAGCTGGTTGTGACTTGGAGCTGATGGGGGACGAAAAAGACACCTGGAAGACGGATGATCGGGAATCCAAACGTGACACTCCAGAGGAAGGAGAATTACGGGACCACAGGATGGAAATAACGATACGCAACTCTCCATACGTAAGGGAGGACTCAACAGAAGACAGAGGAGAGGAAGATGACTCGCTAGCTATAAAACCACCTCAGCAGATGTCCAGAAAAGACAAGTCGTACCACAGGAAAGAAGAGAAGCGGAAGGATAAGAGGAGACGTAGGAGTCACTCTACAGAAGGAGcagGAAAGCACATCCGCGCAAAGGACAAAGAGAAGGAACGGGAGAACGAAAGGCGGAAACGACAGTGGCAGGAGGACAGCAAAGGTCGCAGGGACTATGAACGACAGAAGCGCCGTGATCAGGCCAGGGCCCACTCGCGCAGGGAGAgGGACCGTCTGGAGCAGCTGGAGCGCCAGCGTGAGAGGGAAAGGAAGCTGCGTGAGCAGCAGCAAAAGGAGCTGAGAGAGCAGCGTGagcagaaagagagggaaaggagGGCTGAGGAGAGGCGCAAGGAGCGCGAGGCACGACGAGAAGGGCCCCCTTCCCACCACCGGGGTGGCACCCTGGAGGATTACGGAGACAAAGCTAAGTCTAGGCACCGCAGCCGCAGCCGGAGTCCTGTTCGTCCACAGAGAGAGCAAAGACCAGAGAGTAGTGAACAGCGGCGACCAGTGAAAGAAGAGAAGCAAGAGGATTTACTGGCTGATCTTCAGGAtatcagtgacagtgagagaaagacaagtACAGCAGAGTCTTCAATTGGCTCAGCGTCTGGttcggaggaggaggaggatgacgATGAAGAGGAGTCGAGCAGCCAGAGTGAggaaaatgaagagagagagtcGGGATCAGACTCTGAAGGATCTGATCAGAGTGCAGaAGACGTGAGCGAAGAGGAGCAATCCGAAGAGGAGGAAGACGAAAGAGAGAATGGCAACCACATACCTGCTGTCCCAGAGTCACGGTTTGATCACGACTCGGAGGAGAGTGTTGAGGAAGATGAGGGTGAGGAAGTGGACGCGGGAGACGTGACCCCTCAGTCTCATTCTCAGTCAGCCACACCAGAGGAAAACTACATCCCAGATTCGCCACCAGTCTCACCTGTAGAGCTGAAAAAAGAGCTGCCAAAATATCTGCCTGCCTTACAGGGCTGCCGTAGCGTGGAGGAATTCCAGTGTCTGAATCGTATAGAAGAAGGCACATATGGGGTGGTGTACAGAGCCAAGGACAAGAAAACAGATGAAATCGTAGCTCTTAAAAGGCtgaagatggagaaagagaaagagggatttCCAATCACCTCCCTCCGAGAGATCAACACTATCCTGAAGGCCCAACACCCCAACATTGTCACTGTCAGGGAAATAGTTGTGGGCAGTAATATGGATAAGATCTACATAGTGATGAATTATGTAGAACATGACCTAAAGAGTCTCATGGAAACCATGAAACAGCCCTTCCTACCAGgtgaAGTGAAGACTCTGATGATTCAGTTACTAAGAGGAGTTCGCCATCTCCATGACAACTGGATCCTGCATCGTGACCTGAAGACCTCCAACCTGTTGCTGAGCCACAAGGGCATTTTAAAGATTGGCGATTTTGGACTGGCACGAGAATATGGTTCCCCGCTGAAGCCTTACACACCGGTGGTGGTCACTCTGTGGTACCGTGGCCCAGAGCTTCTTTTGGGGGCAAAGGAATACTCCACAGCTGTGGACATGTGGTCAGTGGGCTGCATATTTGGAGAGCTGCTCACCCAGAAACCACTTTTCCCGGGCAAGTCAGAGATTGACCAGATCAACAAAATATTTAAGGACCTCGGCTCTCCCAGTGAGAAGATTTGGCCAGGCTACAACGAGCTGCCTGCGGTGAAGAAGATGACTTTTACAGAATATCCCTATAACAACCTGCGCAAGCGCTTCGGAGCTCTGCTCTCAGACCAAGGCTTCGACCTCATGAACAAATTCCTTACCTACTGCCCCGCCAAACGGATCAGCGCTGATGAGGCTTTGAAGCACGAGTATTTTCGGGAAACGCCGCTCCCCATCGAGCCCTCCATGTTCCCGACTTGGCCGGCAAAGAGCGAACAGCAGCGGGTGAAAAGAGGAACGAGCCCCCGACCCCCGGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGATCTGAAAGAGACTGGCTTCCACTTGACGACGGCCAACCAAGGACTGTCCAAGTCAGGCCCAGGGTTCAGTCTGAAGTTCTGAGGTAAAAGGCCAGAGCCAAGGGagttttttttgctctttgtgGCACTAATGCCAGGACTCGGTTTAAGAGACTCCCTGAAAGCTGACCAAATGTTCCTCTGAGGCTCCCTGATGCAAACTGTTAAAAACAGTACGAAGATGGAGAAATTCAAGTTCTATCTGTTCATCTTCTCCCAACAGTTAGAGGCAATGAACTGCTCCTCTGTCACACATAATCCCAAATTGGGGTTCTGGCTTTCTGATATAATTGCATTTTTctctcaatattttttttttttttttttggtcatttacTGCTGTTtgtcctgtttgtgttttagctTCCACTCTATTTCATCAAGTCTGATCCTTATAGATTTTGagtttcatatgtttttttttttaagcgacaGACGAAGGACTGTTCAAATTTAAAACCGCATTCCAGCCTACACATACTGGATTCATAACTGGAGTTGTGTAATAATGCGGTTTGCCAAAAGTGTCGGTCATTGACACAGGTGATATtgtgttgtaagaaataaactATTTCCAAGTCTATTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161109 lncRNA upstream 76370 21360839 ~ 21361880 (+) True G136433
TU161105 lncRNA upstream 91089 21346845 ~ 21347161 (+) True G136429
TU160650 lncRNA upstream 472782 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 472782 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 499180 20937123 ~ 20939070 (+) True G136057
TU161152 lncRNA downstream 218135 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 218135 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 340553 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 340553 21797276 ~ 21797689 (+) False LOC113533123
TU161232 lncRNA downstream 368266 21824989 ~ 21825322 (+) True G136532
XM_026925520.2 mRNA upstream 2297 21416894 ~ 21435953 (+) True LOC113533389
XM_034306733.1 mRNA upstream 2297 21417431 ~ 21435953 (+) False LOC113533389
XM_026925521.2 mRNA upstream 4747 21416892 ~ 21433503 (+) False LOC113533389
XM_026925485.2 mRNA upstream 43574 21368806 ~ 21394676 (+) True nadka
XM_034306716.1 mRNA upstream 43574 21368806 ~ 21394676 (+) False nadka
XM_026925096.2 mRNA downstream 24658 21481381 ~ 21484957 (+) True ubiad1
XM_026925443.2 mRNA downstream 32661 21489384 ~ 21562570 (+) True mib2
XM_026925442.2 mRNA downstream 41485 21498208 ~ 21562570 (+) False mib2
XM_026925264.2 mRNA downstream 111187 21567910 ~ 21616083 (+) True LOC113533260
XM_034306537.1 mRNA downstream 167262 21623985 ~ 21672425 (+) True fgd
TU160573 other upstream 690394 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 705779 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 996059 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 231401 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 231797 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 232944 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 233302 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 233698 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile