RNA id: XM_026925629.2


Basic Information

Item Value
RNA id XM_026925629.2
length 1301
RNA type mRNA
GC content 0.46
exon number 5
gene id ankrd39
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25155289 ~ 25157804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgaCGAAGGGTTTACAGAGTCAATCGGGATTACACCTCGGTTTGTTTACTTGGAGATATTTTCCCCAGTAACTGTGTCAATTttagctcatttaaaaaaatataagctTCTGACCGGCGGAGCTAAGAATAAATTCGGTTAAATTTTAGTTTTAGAAATTAGCTAGGTTGCTAATTAGGTGCaaagttatagttatagttatagttaacGTGAGTTGTGAGCTGTGCTAACGACTGCTAGCTGCACGTGCAAGTCAAGTAGCTAGTTATCGCTAGCTAAAAGCTAATAACAGCATGATgactaaaatatttcatatgaaTTCGCTTTAGTGACAgAAGAATTCAGCATGGCATCCCATGGGAATCAGTGTTCCTGCAGCGCTCACCGCTCGACCCCAAGCGTCCATCAAACTCTAGACGAGATGGATTTTGAGAGAGGCATATGGTCAGCAGCTCTGGACGGCGATTTGGAGCGGGTCCGGTCATTTTTGAAAAAAGGAACAGATCCGAACATGAAGGACCAGGCTGGATACACCGCTCTGCACTACGCCAGTCGAGCAGCTCACCTGCCGGTGTGTGAGCTTCTCCTGGATCATGGCGCCTGTGCCAATTCTCAGACACACGGTGGCGCCACTGCTCTGCACAGAGCCGCCTACTGTGGCCACATCAGCATCGTCAAACTGCTGCTGAAACATAGAGCTGATCCTGGCTTAATTGACGATGATGGATCAACACCTCTGCATAAGGCTGCTGAACAGGGCCATCTGGAGACGTGTGTGTTGTTAGTGAGCAAATATCCCAACCTGAGAACCATAAAGGATAAAAAATCACGCTTACCTGTAGATCTCAGTCCAGACCACAACACCTTCTTAGAGTTACTGAAGCCTCCACAATGATCTCCACTGCGATTCCCCAAAGGAGACCTGAATCTCTGAAAGTGCCACTTAAGCTAAAGGACACTGTGCAGATTTTGGTCAAAGTCTCCGTAACTCCATCCATCCTCGTCCTCATCAGTCATCATCCCTAAGCTCATCTACATCCTTGTCATCTACATTCCCATCGTCATCTTCATCCTCCACCCATTCTCAACATCCCCATCATCATCTCCATTCTCACCCCATCCTCATTCCATCCTCATTCCATCCTTATCTTCAtaatcatctccatcatcattCCTTTCCTGATTGAAATTCTCATCCCTATCCTTACTCCATCCTCATCCTTATCCCTATCCCTATCCTTACTCCATCCCCATCCACATCCCCATCCTCATCTCCATAATCATCTCCATTCTCATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164017 lncRNA upstream 21038 25132741 ~ 25134251 (+) False LOC113533115
XR_003403403.2 lncRNA upstream 305745 24848068 ~ 24849544 (+) True LOC113533216
XR_004578578.1 lncRNA upstream 371864 24752541 ~ 24783425 (+) False LOC113533328
XR_004578576.1 lncRNA upstream 400417 24752040 ~ 24754872 (+) False LOC113533328
TU164055 lncRNA downstream 119493 25277297 ~ 25284948 (+) True G138907
XR_004578607.1 lncRNA downstream 152101 25309905 ~ 25333613 (+) True LOC113533374
XR_004578606.1 lncRNA downstream 152101 25309905 ~ 25333613 (+) False LOC113533374
XR_004578605.1 lncRNA downstream 263250 25421054 ~ 25428188 (+) True LOC117597843
TU164115 lncRNA downstream 290811 25448615 ~ 25451577 (+) True G138961
XM_026924976.2 mRNA upstream 21031 25132745 ~ 25134258 (+) True LOC113533115
XM_026925926.2 mRNA upstream 23582 25123601 ~ 25131707 (+) True kctd9a
XM_026925610.2 mRNA upstream 55627 25083550 ~ 25099662 (+) True npy8br
XM_026925805.2 mRNA upstream 129817 25021883 ~ 25025472 (+) True tbx16
XM_034306686.1 mRNA upstream 143092 24954083 ~ 25012197 (+) False cabin1
XM_026925144.2 mRNA downstream 25687 25183491 ~ 25219039 (+) False fgfr1a
XM_026925141.2 mRNA downstream 25688 25183492 ~ 25220173 (+) True fgfr1a
XM_026925142.2 mRNA downstream 25690 25183494 ~ 25219039 (+) False fgfr1a
XM_026925145.2 mRNA downstream 25690 25183494 ~ 25219039 (+) False fgfr1a
XM_026925126.2 mRNA downstream 77290 25235094 ~ 25247013 (+) True lgi3
TU163200 other upstream 1141563 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 1141563 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 1398175 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1631313 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1895836 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 113805 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 751771 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 758286 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1296668 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1296818 26454622 ~ 26457276 (+) False car15

Expression Profile