RNA id: XM_026925730.2


Basic Information

Item Value
RNA id XM_026925730.2
length 3036
RNA type mRNA
GC content 0.48
exon number 25
gene id exosc10
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22360790 ~ 22376465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCGCGATATTTTATTTGTCAGCATGGCGGCTAGCAGGAGCGGAGATGGCGGCGGCGCTAAAGAAAGTGCGACTTCTGTAAATAAAGATGCAGATTCAGAGACAGCAGAGTTTTGCCCAGGTTTTAAAGACGTGGATGCTTTTGTTAAGTATGGACTCGGCTCTATCATGGCTGCTACAAAAGCATCTGCAGGTTTGCCACAAGCAGGAGACGAATATGACTTTTACCGGAGCTTTCCGGGCTTCAGGGATTTCTGTTCAGTGCAAGGAGACCGACTTTTACACTGTATGAGTCAGCTGATGCAGCACCATGGCTGCAGATCTCAGTTGAAAGACCAGAACAAGCTGACTGGCCTGGAGGAGCGCTTTGACATGGTGGTCGACTCCAATGATGTCATCCTGGAGAAAGTGGGAATTTTGCTGGACGAGGCGTCTGGAGTGACCCGGTCGCAGCCTGTTATGCCTGCAGGCTATCAGCCTCCCAAAATTGTTGTGTCTAGTTGGAATCGCAAGGGAGGAGACCGCAGTGCCGAGACCTTCCGCCTCCTTCACGCCAAGAACATTCAGCGGCCGCAGCTAAAGTTTAAGGAGAAAGTCGACAACAGCAACACGCCGTTCATCTCTAGAATCTTCATCAAGCCCAACGCATTAAAGCCCCTGGCTCCATATTTTAGTAACAAACGCCTGCGGAAGGAGAGGTCAGAGGAGTCAGATGTCCCCGTAGCACTAGCTGACTTTATCCACCAGCTGAGAGCACAAGAGCACACGGAAGACATGTTTTCTCATCCTTACCAGTATGAGCTGGACCACCTGGTCATGCCGGAGAGTCTCAAGAGTAAACCTGAACCGCAGATGTATAAAGCTCTAGCAGAGACAACTTGCCAGTTCATCAACAACTTGGAGGATCTGGCTGCTTTAAACGAGAAGCTGAATAAGACCACAGAGTTCGCTGTGGACCTggagCACCATTCCTACAGAAGCTTTTTGGGAATCACGTGCTTGATGCAAATCTCCACCAGAGAAGAGGATTTCATCATCGACACCCTCGAGCTGCGGAGCGAGATGCACATTCTGAACGAGAGCTTCACCAATCCCAGCATTGTGAAGGTTTTCCATGGCGCTGACTCGGATATTGAGTGGCTGCAGAAAGACTTCAGCCTTTACGTGGTCAACATGTTCGATACTCACCAAGCTGCTCGCTCACTCAACCTCGGCAGAAACTCGTTAGATCACCTCCTCAAAGTCTTCTGCAATGTGGACTCGAATAAACGCTACCAGCTCGCCGATTGGAGAATACGACCCTTACCAGAGGAGATGATCAAATATGCCCAGGCTGACACACATTACCTGCTCTATGTGTATGATCGACTAAGAGCGGACCTGTTCGACGCGGCTAACGGACAGTCATCACTCGTACAGCTCGTCTGGTCCAAAAGCAAAGATCTCTGCCTAAAGAAATACATGAAGCCCATCTTCACTGAGGAATCGTATATGGAGCTGTAcaaaaagcagaagaagagCTTCAACAGCCAGCAGTTAACCGCCTTCCGTCTCATGTATGCGTGGAGGGATAAACTGGCAAGAGAGGAAGACGAGAGCactgggTACATCCTACCCAACCACATGATGATGAAAATTGCCGAGGAGTTGCCCAAGGAGCCGCAGGGCATCATCGCTTGCTGTAACCCCACCCCGCCACTAGTGCGCCAGCAGATCAACCAACTCCATCAGCTCATCAAGCAAGCGAGGGAAATCCCACTGCTGAAGGCGGAGGTACTCGCTGAAAAGAAGAAATCGCTGACACCTAAACGAAAGTCTGAGTCGACGTTGTTTGGGCCCCATGACACCTCGCGTGTGTCCGAGAGTGACCTTATGGAGATCTCCTCTCATGAAACCCCGACCAAACGTGGAGTgcttttctcagaggaggatgATGCAAATCTTAGTGAAGACCAGGAGTCTCTTCATGGTCTTGTAGCTTGTGCAAAAATCTCCCTCTTTGCGgaggaagaggaggtgcGTGAATCTGCTCACCTCACCGTGGCCCAGCAGAAAGCGCGCAGCATCATGGAGTCTTTTGAAAATCCTTTCAGAATGTATTTACCATCAAAGGATATACACATCTCCAAGAATGCTAAATACGACCCTTCGTCAAAGATTTATGAGATCAGTAATCGGTGGAAGCTGCAGAGCATCGAGCAGCAGCAGAAGGAGGTTCAGGCTAAACAGCAAGCCAAAGAGCAAGCAAAGAAAGCTAAAGAGGAGCGTAAAAAAGCCAAACAGGGCTATCAGGAGTCCCTGCAGAATGTCACGACAGTCAGGCAGCAGGTCCTGGAAGCAAAGCAAGgaggacagaagagagagagggttacGAGTGAAGCTGGTGAAGAAACTTGCAAACCGAAGAAGAAAGCGTTGAAAACCGAGAAGTCCACCGCCGCGTCTCCTGCAACCTCTAAAGCGAGCCAGCAAGAAGAGTCTGAAGATCCTCAACAGGCCCCGTCTGCTGCCTTCACACCTTACGACTACAGCCAGTCCGATTTCAAATTGTTTGCAGGTAAACCCAAAGACTCCACACACTTCGACCCAAACAGACAGGCTCCTGAACCCAGACGGAagAAAAACCTGAGAGGAAATAAGCAAAGTGCTGGTGGAGGCCGGAGCATGTCCTACCTGCCTGCAAAATCTGACAGAGGATTTCGTCACAACTGGCCCAAAAGATAAGAGTCTCtccaggttttgtttttttaatgtgggTCATTTtagctatatatttatatatagtacatTTGGGGAAACGATACACAATGCTGTATACAAATTATGGAAGACCTTTCATTAAAATTAACTTTCTAAATATTGCTTTCTTTCCATTGTGAGGTTTTTTATGACCTACAAAATAGTGGAAGTGTCCTAATAAACATGCACCAAGGACCAAATTTAATAATTGTGATTAGTGGTGCATTATATGAAGTTTTTCCTAAAATAAAGCATCACAGTGAGAAAgtggtgaatgaatgaagtatTAGGTGAAA

Function

GO: NA

KEGG:

id description
K12591 RRP6, EXOSC10; exosome complex exonuclease RRP6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161862 lncRNA upstream 53175 22304729 ~ 22307615 (+) True G137057
TU161800 lncRNA upstream 211013 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 237039 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 501122 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 520938 21839632 ~ 21839852 (+) True G136544
TU161897 lncRNA downstream 90302 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 92169 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 94576 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 132746 22509211 ~ 22509494 (+) False LOC113533405
TU162068 lncRNA downstream 134440 22510905 ~ 22511176 (+) True G137229
XM_034306526.1 mRNA upstream 1742 22267058 ~ 22359048 (+) True mtor
XM_026925220.2 mRNA upstream 1742 22267058 ~ 22359048 (+) False mtor
XM_034306527.1 mRNA upstream 1742 22272919 ~ 22359048 (+) False mtor
XM_034306976.1 mRNA upstream 94161 22252273 ~ 22266629 (+) True qars1
XM_026925197.2 mRNA upstream 148769 22205877 ~ 22212021 (+) True LOC113533224
XM_026925660.2 mRNA downstream 1463 22377928 ~ 22409804 (+) True ppih
XM_026925258.2 mRNA downstream 34728 22411193 ~ 22416575 (+) True ybx1
XM_026925823.2 mRNA downstream 121293 22497758 ~ 22499212 (+) True hes2.1
XM_026925544.2 mRNA downstream 131161 22507626 ~ 22509409 (+) True LOC113533405
XM_026925541.2 mRNA downstream 135607 22512072 ~ 22583841 (+) False acot7
trnaa-ugc_5 other upstream 670298 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 670694 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 671052 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 672199 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 672595 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 871883 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1138121 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1373952 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1635152 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1635152 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile