RNA id: XM_034306466.1


Basic Information

Item Value
RNA id XM_034306466.1
length 1600
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC113533564
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23510190 ~ 23513559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCCAGTTTATAGGAAGCGGATGTGTCAAGTTTAGCGGAAGTGGTACAGCCCAGAGACAGAGAAGAACGAGAGGAGGACGGACACTCCAAGCCGAGCTTTCATAGAGAAAAAGCGGGACTAAACCCTATTTAAACCGCAATTTAGCAAGAAGCTGAAATCTCGTCACCTCAGTTTTAACGCCGGTTCTGTGTCTGTCCTCGCAGTCTGACAATGGACAAGAGCGACCTGGTGCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGCTATGATGATATGGCCGCCGCCATGAAGGCAGTGACTGAGGGCGGCGGCGAGCTGTCCAACGAAGAGCGCAACCTGCTGTCCGTGGCCTACAAGAACGTGGTCGGTGCACGCCGCTCCTCCTGGCGTGTCATCTCCAGCATCGAGCAGAAGACTGAGTCCAACGAGAAGAAGCAGCAGATGGCGCGCGAGTACCGTGAGAAGATCGAGGTTGAGCTGCAGGAAATCTGCAACGATGTTCTGGGTCTCCTGGAAAAGTATCTCATTCCCAATGCCTCTCAGGCTGAGAGCAAGGTGTTCTACCTGAAGATGAAAGGAGATTATTATAGATACCTGTCTGAGGTTGCATCTGGGGAGTCCAAGAGCTCTACGGTCGATAACTCTCAGAAGGCCTACCAGGATGCGTTTGAGATCAGCAAGAAAGACATGCAGCCCACACACCCCATCCGGCTCGGTCTGGCTCTCAACTTCTCCGTCTTCTACTATGAGATCCTGAACTCACCCGAGAAGGCCTGCAACCTTGCCAAGACGGCCTTCGATGAAGCCATCGCTGAGCTCGACACCTTAAATGAGGATTCCTACAAAGACAGCACCTTGATCATGCAGTTACTAAGGGACAATCTTACCCTGTGGACGTCGGAAAACCAGGGTGACGAGGCAGATGCAGGCGAGGGAGAGAACTAGAGGAGCCACACTGATCTCCaaacacccgcacacacaccccccatcttacttaaaaaaaaaaaaatttaaaaaatacacaaatggcTTCCTCTGAAACCCCCCACCCACCCTGCTTTCCATTCTCCATCCTTTTTCCATCAGCAGCCTGCTCCCTGTACCCACCCTCCCACGATCAGCATGAGATGCACCCGATGcgatacacacactgatgccTCTTGCGCAGGCTCCGGCGGCAGGGATGTGAGGGAGGGAGGGTTTGCGGGGTGACATGCCATTTTCAGCAGGTCCGCTCATTTTGTTTGTGAAATTCAACAcggttgtactgaatatcagatCCATATTTGTTAAGTGCAtgagtgagcgtgtgtgtgagagtctgaGTGAGTGTATGGTATGATAGTGTGACTGAGTTGTTGttcatgtgagtgtgtgtgtgttttggagtcGGGGGTTATAAACTCTAAAAGTCCTTCCTGatgattcctttttttttttttttttttttttttttttcttttcccatttttttccaccttaGCTGGTTGTGCATTTTCATCCTTATTTTTTTGTTACGGATTTTTTTAGTGTAATTCGTCATGGTATTTGCAGGTTTTATTGTATGGTTATTAAACTGGCAGTTTATTTTCACCAAA

Function

GO:

id name namespace
GO:0006911 phagocytosis, engulfment biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162558 lncRNA upstream 248204 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 249498 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 252797 23248597 ~ 23257398 (+) False tprg1l
TU162543 lncRNA upstream 350688 23095798 ~ 23159507 (+) True G137650
TU163000 lncRNA downstream 233904 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 376871 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 476339 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 608051 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 849390 24362949 ~ 24363761 (+) True G138280
XM_026925124.2 mRNA upstream 341 23505084 ~ 23509854 (+) True LOC113533186
XM_026925266.2 mRNA upstream 6685 23496631 ~ 23503510 (+) True eif2s2
XM_026925267.2 mRNA upstream 14318 23490838 ~ 23495877 (+) True LOC113533263
XM_026925371.2 mRNA upstream 25329 23478294 ~ 23484866 (+) True LOC113533314
XM_034306900.1 mRNA upstream 48769 23437236 ~ 23461426 (+) True LOC113533316
XM_026925106.2 mRNA downstream 1027 23514586 ~ 23524705 (+) True pabpc1l
XM_026925107.2 mRNA downstream 1027 23514586 ~ 23524705 (+) False pabpc1l
XM_026925108.2 mRNA downstream 1027 23514586 ~ 23524705 (+) False pabpc1l
XM_026925111.2 mRNA downstream 1027 23514586 ~ 23524705 (+) False pabpc1l
XM_026925085.2 mRNA downstream 21037 23534596 ~ 23546658 (+) True eif2d
XR_004578647.1 other upstream 250742 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 1819703 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1820099 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1820457 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1821604 21688520 ~ 21688591 (+) True trnaa-ugc_3
XR_004578528.1 other downstream 1027 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 236858 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 498058 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 498058 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1758050 25271609 ~ 25271680 (+) True trnae-cuc_21

Expression Profile