RNA id: XM_034306994.1


Basic Information

Item Value
RNA id XM_034306994.1
length 3697
RNA type mRNA
GC content 0.46
exon number 17
gene id wu:fl23c11
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21808021 ~ 21824844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGTCAGAGTCCATTCCGGCTAACGGCGTCCACCGGGCTCTGAAAACTATAGCTAATagttttgaatgttttattctgtaaacCTCTAGCATTTTCTTTTTCGAAGGCGACATATATCTAATTCTCAACCAAAATTGTTATACATGTAcctatattgtttatattttatagccTTTCTTTGACATTTCAGGGGCTCGTGCCTGTAGCACTGCAGCTGTCACAAAATCCAGCGACACCGCACACTTGTGACAAGGGTGTTGGGAAATAACGAACTAGAAGAACCTGAAGGATTTAACAACATTAAAGCAAATAACCTACAGCTCCTACACCAGCGtctcaggtaTCAACTGAAATGTCATGTGGCGTGTCCCGTCCACTCGTGTGTTCTTCATGACGTCACTCTCATCAGGGACGTGAAGGAGAGTACATGTAGACATGTAGCTGTCTCCACTGCAGTTCTGTCATCATCGGCGTCTTGTCACAATGATGCTCACGCTCGGTCACACGCTGGTCTTCTGGaccacactctttcacacacaaagCCTGGAGCTCTTCAACTTCACCGAAGAAGATGCGCTCACCTGCAGCCAGGTCCTTACTGATTGTAATGTAAAGCCAGGTGATCTATGTCTTTATCAAGATGACAGTGTTTATGTGAGTGGTCTTGCTGCTCATGCGCTGTTGTGTAAAAGTCAACAAGGCTTGCGTCCATGCTTAAGAATCTGGATTAACATTACAGCTGCAGGAGTCCATGAGGAAGCAGCTCTGTCTGGAGAAGATAGCTATAAAGACAAAAGAAGTGAGAACAGGTTACATGAGCATGGAAGTGGCCTGGAACCGTCCGTTTCCACATCAAAGTCTATCCAAGTGTGTTACCAGGGCCCAGACTTCTCAGGTTCAAAAGAGCTCACTTTCACACTGCCCTTCTCAGATGACCACACAACACAGATGTGGATGTCATTGATAGTAGAGCTGAGGGAAGATGATTTTGGCAGTACAGTCACTGTCTTCTCTTCAAACCCTCATAAACCCACCTTCACGAAAGAGATCCAGATGGCTTCAATAGACAAagtttgttcCCAAGGTCTGGCCATTGCACAGTGTAAAGtACCCATTTTGTATCCAGAAATCAACCCAAAAACAGGAATGGCAGAACTACTTGTGGGTGATCTGGCCAAGGATGAAGTTCATAACCTGCAGGCCTGCCAGAGGATGGAGAAAGATGGGCCATGTTTACGACTAGAATGGGAGAATCCACTGATGATTCCAATGAGCTCTGTCGCCCCCTGTCTCTGCTTTcagATTTGGCGGGTGGATGGACCTCGAAAGATGTTTTGcccatttattaataaaacagctctctctgtctctaatgtatctgtgtctgtggtGGAGTCTTCGACTCACGATGGAGCAATGGCTATAAACAGCACTGCTCTTGTTTGGAACATCACTGCCCCCTGCAGACTGGAGGCTGAAATTCATCTCTGCAAGAAAACGTCAAGCTCCAGCAAAGACTGCCATGTAACAGATGACTTAAGGAACAGCAGGCACTATACACACGGCCGTCAGCATTCAAAATGGATCTTGGTTAACAAGCAGCACTGgCAATCACAAGGCGAGTTTGCTCAAGTGGAACGTCACCCTTCACTCTGTGTGCAGATAAAGGTTAAGGGAATTGAAGGCCATTTTGAACTTGTCTGCCCTTTTGAAGttaCCAGAACTCATTGGAGTTTGTTTCTGTTGGTATCTGTGCTTGTCATGTGTCTGGCAGTTTTGGGAGCCTATGTTCTCCAGGGATTACTCAAAGCAGGTTGGATATTCAAATGGCTGAAAATGGATAGCATCAGCAgtaGAGTAGGAGATGGTCAGGTGGTCCTGCTGTACCCTCCGGATGCAGACAGTGCTGTTGCAGTGCTGGTGTGTCACTTAGGCTCAGTTCTCTCCTCGCTGGGATTCGGCGTCTCTTTGGAGTTGTGGAGCCGCGAGGAGCTGAACGCACTCGGCCCCGTACCCTGGTTGCACTCACGTCTTCATCGTATGCAGTGCCACGGTGGCAAAGTGGTGCTCGTGCTCACCCCTGCCGCTTGGGCACGAGCAGAGGAGTGGTGTCGAAGCAGAGGAGAGAAGACTGAGCAGCGAGAGAACTACTCAGATGTTTTCAGTGCCTCACTCAGCTGCATTCTTGCTGATTACCTGCAGGGCCGCGCCGGCGAACGCTTTGCCCTGGTGCAGTTTGAAACACAGCCGGCCGAACCCCCGAATGAAAGGGGATCCATGCCTGAGCTTTTTCGTGGGCTTCCTCTTTTCAGCCTGCCCTCTCAGAGTTTGGGATTTCTGACTGAGATCACTCATGGAGCTTACAGAGGACAAAAAGAACATGAGAGAGCTGAGAGCAGAAGAACAAGGGCCGGTGTTTTGAGAGCAGGAGCACGAATTTTAGCAGGAACACTGCGAGAGCTAACAGGGGGAGCAGGATACAGGTTAGCGGGGGTTTCTCAGGATTGCATGGGGTTGGAGATGGACGATCCATGGGTCACTATACCTCTGACGCTAGAGCACTTGACTCCACCTGCTAGTCCTGAGTTACACAGTGAGAGCAGCACTGTCAATTGAATTCCTGTAAAAGACTTAGAATTTCACTGAAGTGCATCAGAGAACGGGTGGCATAGTTTTGTCAAATAAATGTCCCACTGAGCCAGGCCATGTTTTGACTCACTATCATCATAATCGTAAAATCGTTTTTTTTAAACGTACGATATTGGATGgcattgctgtctcacagctccagggtcacaggtcctgggttcgatcctgagttaCTATCTGTGCTGAGTTTTGCAGcttctccctgtgtttgtgtggctttCCTCTGGGTTCATCAGTTTCCTCCTACTGTCTTAGTTACCCTAGaatgcccctaggtgtgaaagagtgcgTGAATGAGTGTGCCTTTTGGTGGATGGAGTTCACCCCATCCAAGCTGAATTCTTCTATCCTGTGTCTAGTGTTGCTGGAacaggctccggatccatcGCAACGCTGATTagtgaagaatgaatgaatgaatgactgaatgactgaaaaGATATAATATTTCTTATATTCAATTCCGTTAAAAggtgaaattaaaaatgtaattgccaTCTGAGGCACACTGGAGCTCCTGGGTGGCACTAAGAAGAGTTCCTCAGCAATGTGTTCACCATCTACCTTTGCCAGATTTTACAGGTTGAATGTCGCTACATGCATAAGgagtgttttgttttaaatctaaCCAAACTGACACTAGACATGAAATGgccagttttctttcttttttttttattttgtaaaagatCCAAACTGACATGTTTTACTCAAAATTTCCACAGAACATGTTTATATGGCTTATACCCGTGATGATAtacaaggtgtcccaaaagtctccatacataggggactacgTACGCCAGCACCACATCAGTTgtgtcttcgtcagtggatgttcgtggacgtccacttctcggttggtccgtaacacttccagtctttttgaattcgttaataagtttggcagcagtgtcatGCGTGATGCgtttgccatgtttcctggtaaagtccatcgcaaccttgcgacagcttcccgattcAGCCATGAGAacgatttcaatacgttcttcttttgtcaaaggcgttcttaaagactatctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161219 lncRNA upstream 10213 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA upstream 10332 21797276 ~ 21797689 (+) False LOC113533123
TU161153 lncRNA upstream 114319 21674858 ~ 21693702 (+) True G136466
TU161152 lncRNA upstream 120592 21674858 ~ 21687429 (+) False G136466
TU161109 lncRNA upstream 446141 21360839 ~ 21361880 (+) True G136433
TU161232 lncRNA downstream 145 21824989 ~ 21825322 (+) True G136532
TU161246 lncRNA downstream 14788 21839632 ~ 21839852 (+) True G136544
TU161242 lncRNA downstream 18343 21843187 ~ 21859668 (+) False LOC113533434
TU161753 lncRNA downstream 267751 22092595 ~ 22123751 (+) False LOC113533283
TU161800 lncRNA downstream 323779 22148623 ~ 22149777 (+) True G137017
XM_034306993.1 mRNA upstream 10252 21781223 ~ 21797769 (+) False LOC113533123
XM_034306992.1 mRNA upstream 10252 21781224 ~ 21797769 (+) True LOC113533123
XM_026925406.2 mRNA upstream 41631 21743942 ~ 21766390 (+) True brpf1
XM_026925407.2 mRNA upstream 41631 21743942 ~ 21766390 (+) False brpf1
XM_034306635.1 mRNA upstream 65460 21694034 ~ 21742561 (+) True LOC113533227
XM_034306734.1 mRNA downstream 838 21825682 ~ 21844958 (+) True LOC113533434
XM_034306618.1 mRNA downstream 35464 21860308 ~ 21903238 (+) False ift122
XM_026925888.2 mRNA downstream 35464 21860308 ~ 21903237 (+) True ift122
XM_026925235.2 mRNA downstream 79042 21903886 ~ 21908552 (+) True LOC113533243
XM_026925693.2 mRNA downstream 275622 22100466 ~ 22103356 (+) True trh
trnaa-ugc_5 other upstream 117529 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 117925 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 118283 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 119430 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 119826 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1423504 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1689742 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1925573 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 2186773 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 2186773 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile