RNA id: XM_026925830.2


Basic Information

Item Value
RNA id XM_026925830.2
length 2547
RNA type mRNA
GC content 0.49
exon number 14
gene id zgc:154046
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24264059 ~ 24277565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTACTagctcaatctggcaacccggcgCTCTGTGATCTCTCTGGGTTCTGTGAGGGAGGGCGGAGACGCACGGGAAGTTTGACAACAAGAACAAGTTTAGCTCGTCCTTGGAGAGCAGAATGTCAGAGCCACTTTGTTGATAAACCTGGAGGAAGTGTTGGAGTTGCTGGAGCTGAAATCATGCTGAGTGTCCTGGCGAGAGCTGCGTCGAGGGCGGTGCCTACGCGCTTAGCAAGGCCAGTGGTAGTCGTGCAGATCCGTGACAACTCTCTGGCACATCAGGATGGTCTGCCCAACCTGCCAGTGCCACCGCTCAGACAGACATGCGAACGCTACATGGCTGCACTCGAACCACTCGTGTCTGAGGAGGAGCTGGACCACACACGCCAGCTCATGGCTGAGTTCCTGTCCTCCGGTGGCGTTGGGGAAAGGCTGCAGAAAGGACTGGAGAGACGAGCACGCAAAACTGAGAACTGGCTCTCTGATTGGTGGATGCAGTCAGCCTACTTAGACTCTCGTATGCCAATCCCAGTGTACACCAGCCCTGGCGTGGTTTTGCCTCAAATGCACTTCCAGGATCGCCAGGGACAGATGAGGTTTGCTGCCAAACTGATTGCAGGAGTTTTGGACTTCAAACGAATGATTGATAGTGAAACACTACCTGTTGAGTATTTGGGAGGAAAGCCATTGTGCATGGACCAGTATTACCAGGTGCTGTCATCATGTCGAATACCAGGACCGAAGAAAGACACTATGGTGAACCACGCCATTGGAAAGACGCCACCAACTCACATCACGGTGGTTCACAATTTTCAGttttttgttttggatGTATACAATAGCGACGGCACGCCTCTGACGGTGGATCAGCTCTACATGCAGTTGGAGAAGATCTGGAATTCTTCTTTACAGACCAATAAAGAGCCCATTGGCATTCTCACCTCGAACCACCGCAACACCTGGGGCAAAGCCTACAACAACCTCATCAAGGACAAAACGAATAAAGAGTCTGTACGGGCGATCCAGAAGAGCATCTTCTTAGTGTGCCTGGACGCCCCGATGCCCCGTGCGTCAGATGAGATCTACTACAGTAAAGTGGCTGCACAGATGCTGCATGGAGGAGGAAGCCGCTGGAACAGTGGGAACCGCTGGtttgataaaacactacagTTTATAGTGGGCGAGGATGGATCATGTGGACTGACGTATGAGCATGCTCCTGCTGAGGGACCTCCCATTGTGTTCCTAGTGGACCATGTGGTGGAATATATGAAGAAAACTGAGATGGTGCGAACCCCTATGATTCCACTCTCCATGCCGCAGAAGCTGCGCTTTAACATCACACCTGAAATCAAAAAGGACATCGAGAAAGCCAAGCAGAACATGAATATAATGGTGCAGGACCTGGACGTGCGAGTGCTCAACTTCTCGCACTATGGGAGGAAATACCTCAAGTCATATAATATGAGCCCAGACGCTTTCATCCAAATGGCCCTCCAGCTGGCATATTACAGGATCTACAATGTTTGCTGCCCCACATATGAGAGCGCCTCCCTACGCATGTTTAAACTGGGCAGAACAGAGGCCATCCGCTCCACCTCCACTGAGTCGCTCAAATTCGTACAAGCCATGGATGACAATTCTAAACAGAACGCAGAGAAAATGGCCCTGCTGGAGAAGGCCATCAGCGCCCATCgagattacacacacatgGCCATTCACGGTCAGGCAATAGACAGACATCTGCTGGGGCTGAAGATGCAAAGCATTGAGGATCTGACTTCTCTCCCGGAAATCTTCATGGACACTTCGTATGCCGTGGCCATGCATTTCAACCTCTTGACCAGCCaaGTCGGCTCAAAGACAGACTGTTTTATGTGTATTGGGCCAATGGTGCCAGACGGTTATGGCGTCTGCTACAACCCAATGGATGATCACATCAACTTTGCTGTGACGGCCTTCAACAGCTGTGAAGAAACTAATGCCACCAAACTAGCACGGTTCCTCAAGGAAGCACTGCTGGACATGAAGGCTCTTCTGGAACAGACGCCTAAGCCAAGCAAGTGAGGCTGCTTACTGGGGGATAAGACAAAAGCAACAAGCAAAGAGGACCAGAGTGGAAACGTAACGctgggaagaagaagaagtattTGCTGTACCTGCATAAGTCCTCAGGCAGAACGTGAACATGCAGGACACTGACAGTTCTCTCACCCTTATTTCTTTGATCAGCTTGCCATGACGTTAATGTTTGTCCCACAAACATTTTAGTAAGGATCTCTGATGCTGGTGGAAAAAAATGGCACCACCATGTTGCAATGTGTTCATGATACTTCAGTATTTTTGTTAGCTGCTGTTTACTTAATGTTGCTGTTTACTGATGTCTGTCTGAAGGTTTGCTATTGGTATTCCATATCAAACCCGAGTTTTCTGCTCAACTGAAGCACTTAGCTAGTCTGCTTTATGACTGTGAGGTGTGTATCTAAAGCCACATATTTATTGGGATAAATATACATTTGGACACAGTACAGCTGTAAGATCTaca

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163261 lncRNA upstream 139490 24121610 ~ 24124569 (+) True G138239
TU163191 lncRNA upstream 273962 23989898 ~ 23990097 (+) True G138176
TU163176 lncRNA upstream 369343 23890430 ~ 23894716 (+) False praf2
TU163000 lncRNA upstream 513691 23747463 ~ 23750368 (+) True G138014
TU162558 lncRNA upstream 1002068 23257671 ~ 23261991 (+) False tprg1l
TU163307 lncRNA downstream 85384 24362949 ~ 24363761 (+) True G138280
TU163604 lncRNA downstream 224521 24502086 ~ 24502371 (+) True G138535
TU163649 lncRNA downstream 369214 24646779 ~ 24647451 (+) True G138578
TU163669 lncRNA downstream 453422 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 474475 24752040 ~ 24754872 (+) False LOC113533328
XM_026925418.2 mRNA upstream 23131 24228845 ~ 24240928 (+) True naa35
XM_034306806.1 mRNA upstream 23131 24230134 ~ 24240928 (+) False naa35
XM_026925653.2 mRNA upstream 74601 24138141 ~ 24189458 (+) True ntrk2a
XM_026925654.2 mRNA upstream 74601 24138141 ~ 24189458 (+) False ntrk2a
XM_026925655.2 mRNA upstream 74601 24138141 ~ 24189458 (+) False ntrk2a
XM_034306605.1 mRNA downstream 18522 24296087 ~ 24310124 (+) False ubap2b
XM_034306607.1 mRNA downstream 18522 24296087 ~ 24310124 (+) False ubap2b
XM_034306606.1 mRNA downstream 18543 24296108 ~ 24310124 (+) True ubap2b
XM_026925865.2 mRNA downstream 40318 24317883 ~ 24361925 (+) False pcsk5b
XM_026925868.2 mRNA downstream 40318 24317883 ~ 24340549 (+) False pcsk5b
TU163200 other upstream 250333 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 250333 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 506945 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 740083 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1004606 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 994044 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1632010 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1638525 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 2176907 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 2177057 26454622 ~ 26457276 (+) False car15

Expression Profile