RNA id: XM_026925859.2


Basic Information

Item Value
RNA id XM_026925859.2
length 2588
RNA type mRNA
GC content 0.44
exon number 9
gene id gabrd
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21034464 ~ 21060300 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCAGATGGTATGATAGTGCTGATCAGCGGGTTTAGACTGCTCTCTGACTCtaaggggaaaagagagagagaaagagagagagagagagagagagagaggagagtttCCGTTGCGCTTGAAGCGCTTCAGCAGTTGGGACAGGAGGACGCAGGGACGCAGGGACGCCTCTCTGACCGCATCATGGATCACCCCGAACGCTTACTTTCCTCACTTCCCCTCTACACAACATAGGACCCTTACCCCAACTCTGATCTAATCTCTTCACCTCTGGAATACTTCAATATAATCCTGCAAAATGGAAATGACGTTCTTTCTTTCAGCGGTTTTCTCACTCATCCTCGTGGGGAACGAACTGACCAGGGCCATGCTGAGTGACATTGGTGACTATGTAGGTACGGATATTGAGATTTCCTGGTTGCCTAATCTGGATGATTTAATGAAAGGCTATGCTCGAAATTTTCGTCCAGGGATAGGAGGACCTCCAGTGAATGTTGCCATGGCTATTGAAGTAGCCAGCATTGACCATATCTCAGAAGCCAACATGGAATATACCATGACTGTGTTTCTGCGTCAGAGCTGGCGAGACGAGCGCCTTTCTTACAACCACACAAACAAGACCCTGGGGCTGGACAGCCGTTTTGTAGATAAACTCTGGGTTCCAGACACGTTTATTGTCAATGCCAAATCGGCCTGGTTCCATGACGTCACTGTCGAGAACAAGCTCATACGGCTACAGCCTGATGGTGTCATCCTCTACAgcagccgAATCACATCCACAGTAGCCTGTGACATGGACCTAACCAAGTACCCAATGGATGAGCAGGAGTGCATGCTGGACCTTGAGAGCTATGGCTACTCTTCAGAAGACATCATTTATTACTGGTCAGACAGCCAGAAACAAATTCATGGCCTGGACAAACTGGAACTGTCCCAGTTCACTATCACAGACTACCGCTTTATCACTGAGATGATGAACTTTAAATCGGctGGGCGATTCCCTCGGCTCAGTTTGCACTTCCGGTTGAGGCGGAATCGAGGAGTCTACATCATCCAGTCCTACATGCCCTCTATCCTGCTGGTTGCCATGTCTTGGGTGTCTTTCtggatcagccaatcagctgtgCCTGCAAGAGTATCACTAGGAATCACTACTGTGCTGACCATGACGACGCTGATGGTGAGTGCCCGCTCCTCGTTGCCTCGTGCCTCCGCCATAAAAGCCCTGGATGTATATTTCTGGATCTGCTACGTGTTTGTGTTCGCCGCCCTGATTGAATATGCCTTCGCTCACTACAACGCCGACTACAGCAAGAAGGAGAAGGCCAAGGTCAAAGTGAACAAGAATACAGAGTCCATGGTGAAGAATGGAAAGCAGGCTATGGTCCTCTTCTCACTGTCAGTGACAGGCATGAATCAAGGCCTTGTGGTCTCCAACCGGCAGAACCGTGCCCAAAGTGAGACATCCGTAGAGCCTCAGGAAGAGGCGGAAACGGCTAAGCAAGAGAGCAGTGAAGAAAGGAAGTGCTGCAAGTGCAAACCCATAGACGCTGACACAATCGACATCTACGCCCGTGCCGTCTTCCCTTTCACGTTCGCCGTGGTCAACGTCATCTACTGGGTGGCTTATACCATGTGACATACAGATGCCAAGTCAGCTGACATCTTGAGATTTTGGATTTTTACATTATGGGAAGATCATTATTGTCAAACTATGATTCAGATTGTTGAATCCTTATGATTCAACTCAGACTGCTTAGGTTTTGTGTGGCTCTACATCTGATAAAGCCAGATAATGAAGATGAGAACATCTGGTAAGGAAGCAATTTTCCTTTCAACAAGATGAAGGTGAGTGGAATATGAGGAATCGCTGCGAGGGCTGCTGATTGTCTCGCCTCTGCAACATTACATTGCCTTGGTTTCTCTTTACATGTtactattataatatattagatattattttGTGACATTTAATTGCAATTCTTTTTCACCTGAAACCTGGGATAATTAAATTGAACCACACAACATGACTGCATGGCTGCTGTTTTGatcagtaatttttttcattcttattcTGCCATGGTTTTAAGTTTCCTGCCATTCTCTAGGCTTTGGACTGCCTTCAAATTAACTTCAGACTTTGCGAAACTGTATCCACTGTTTGATTTTCAACATGAGGTTATTACTTGAGCAAATGACTGAAATGTTGGATCAGTCATGAAAGAAGGCCATAGTTTAAATAATGACGTTAAATAATGACAATTTCTTTCACAATGCCTACTTGcatgttaatatatttataatgtgaCCTTAGGTAGCCGAACTCTAGACTTATCACAGACCAAATGTATTTCTATGTAAAGTTTTGAGTATTAAAATGGCCGCAAGATATTGAAAATGATCTACTGCCCTGAACAAGCAAGGTATGGAGAGAGTTTATGGCCAGCTTTCTTAAATAATTCAGTTCACTTTTCTTAATATAGTTTTCCTTTTGAAGCtccaaataattaaatgacaatACTAAAGAGAAAATTGTATTGAGTCTATATAGAGGTGATGACTGCTGCAATAAATTTGAGAGtgataaaa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160650 lncRNA upstream 68996 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 68996 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 95394 20937123 ~ 20939070 (+) True G136057
TU160256 lncRNA upstream 848918 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 1019694 20014522 ~ 20014770 (+) True G135643
TU161105 lncRNA downstream 286545 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 300539 21360839 ~ 21361880 (+) True G136433
TU161152 lncRNA downstream 614558 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 614558 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 736976 21797276 ~ 21797808 (+) False LOC113533123
XM_034306267.1 mRNA upstream 100776 20916823 ~ 20933688 (+) True tkta
XM_026925298.2 mRNA upstream 124715 20898476 ~ 20909749 (+) True dcp1a
XM_026925241.2 mRNA upstream 250396 20769050 ~ 20784068 (+) True chdh
XM_026925240.2 mRNA upstream 276883 20748979 ~ 20757581 (+) True actr8
XM_026925562.2 mRNA upstream 286813 20744580 ~ 20747651 (+) False selenok
XM_034306372.1 mRNA downstream 15527 21075827 ~ 21185924 (+) True LOC113533118
XM_034306363.1 mRNA downstream 163334 21223634 ~ 21250625 (+) True LOC113533151
XM_034306364.1 mRNA downstream 163334 21223634 ~ 21250625 (+) False LOC113533151
XM_026925133.2 mRNA downstream 216387 21276687 ~ 21314172 (+) True prickle2a
XM_034306833.1 mRNA downstream 278126 21338426 ~ 21355283 (+) True LOC113533443
TU160573 other upstream 286608 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 301993 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 592273 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 627824 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 628220 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 629367 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 629725 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 630121 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile