RNA id: XM_026925878.2


Basic Information

Item Value
RNA id XM_026925878.2
length 2167
RNA type mRNA
GC content 0.39
exon number 5
gene id plp2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23935124 ~ 23951250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGGGCAAAGTCAGAAGGTCTTCTGAGCAAACCCTccgacaaaaagagagagagagagagtgagagagagtgagagagaagtgaaagCCAACGCCCAGTTTTTTCTCTGTGCCACAGAAGGAAAGATTGTGTTGGCTGTGAGATATTCAGACGTCTGTGCTTCTCACCCTCCTACTTCTGATTACTTCTCCTTGGGTTCACTTCACTCCAGAGTTTCTCGTCGTTTAGCTTCTTAAGCGTTTATTTTTCCCTGTTGGgttgcatatatttatatatatatttatctttatatttatatctagtcATTAAACTACCTCAGGACATTTTGCACCTGATCTCCAGGCAGGCTATTTCAGCCTTCATATCACTGAGTAGCCTGCTGTTGCTAAGAGCGCTGCTGACTGGGAACTGCTTATTAAAATGGCAGATACAGAAGCAAGTCCAGGCTTTGTGGGCAAACTGAAAGACTATGTACGGACACGGAAAGGGACCATACTGGCTGTGGAAATACTCCTGAGCttgatcatcatcatctgttACGCAGCGTCAGCGTATGGAGGATATTCAGCAGTGGCTATATGTGAGATGGTCTTTGCAATCGTCTTCTTCGTCATCTTCATGATGCAGCTGGATAAACAGTTCCTGGTCGTCAACTGGCTTTGGAGTGATTTGTTCCGCGCTGGGATTGGTGCACTGCTGTACATCATCACCTCTCTGATTTGTGTGATCGGTGGAGCCGGAGATGGAGCGCGCATCGCAGGGGGGGTGTTTGGACTTATCGCTGGCATTGTGTTTGGTTATGATACCTACACAATTTTTGCAGAAATCAAGAACACCCGAGGGCAGGCTGTTTCCACAGagGCTTGAACActattataacagcaacaacaccCGCTTGGGAAGACTTGGGAAGGAACAAGGGATTGAAACATGGCAAACTAAGAATTTCAAAGGTTTTCCTGGTATGATGAGGTCAATGTTGTGGAGTTGTGAATGCTGCTCAGTGTTGAAAACATGACACAAACAGACTGAAATACCTGAGCTACTTAATGATTACTGCCAAAACACCACAAATAATTGGAGATGCTGTTGTCTGGCTTCTTCTATAGCAAATATTTCGGCTGttacagcattattattataagttatGTCGGGATGGCTCCTTTTAACATCACATGGTGCTCTCGGACATGACTAGGAAATTCAGAAAGGAATGGACTGATCACACTTTTAAAATGCTCAATCCATCTTGCCCAGGTGATCAAGGAAACATCACAATAGGAAAGGGAACTGAAGGGAAGAAATTTTGATTCAGTTTAGGTTTGGAGCTGTGTTGATTCTCTTTAAAATACAATGTCCACTTGAATTGGCAAGGTGTAAAATTTCAGCCACAAGTTTCAGGATTATTTCTGTCTACTAAAATTTGATATTTGTATGGGTTAGAGTTGTGCatttacttaaaataattaatctgAAGTACTACGATGGTAGAAGTGAGATGTTTCTAtctagttatttaaaaaaaatactaccaGTGAAATGAATAGAAgtaataatataacatttataagtGTTTTGccatatttctgtttctttttgttttagtaTTTTGTTAATTCAGGTTTTCCtcagttttcctttaacagtaaCAGGGAAGATCAAGGGTACTAACATACCCTAATGTTTGAGTGACTGACCCAAGTCCCAAAAGTGGATTATAGAAGGTTTTTATGTTTAGACATGTTCACTGTACACTTGCAACAGGAATAAAGCTTGAATGCAGCCTCACTCTCCTATTAGTAAATAACGATTCTACAGGAAACAGCTAAAAAACAACatcaatgttgttttttttttttggctctataAAGAACATTACTATGTATTCACTCTTTGATTTGATATTGCACACTTCTTTCCTTAATCTGTGATCTGGCCTAAATTGTTTCTGTGCATTATCTGACTACAAATTTTTTTTGGATTCACACAACCCCATATAAAGATATCCgattgttttatattgttttatgtgATATATCCTGTCCATGAAGGCCTGCCATTGTTTCTTTTCCCATGGTGTTTCCTGCTTGAGGTTAAtatgctttatttgttttttacagtCTTAGTTTTATTCTTTCATATTAAAACTGGCTactgaaaatgtca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163176 lncRNA upstream 40408 23890430 ~ 23894716 (+) False praf2
TU163000 lncRNA upstream 184756 23747463 ~ 23750368 (+) True G138014
TU162558 lncRNA upstream 673133 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 674427 23248389 ~ 23260697 (+) False tprg1l
TU163191 lncRNA downstream 38648 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 170360 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 411699 24362949 ~ 24363761 (+) True G138280
TU163604 lncRNA downstream 550836 24502086 ~ 24502371 (+) True G138535
TU163649 lncRNA downstream 695529 24646779 ~ 24647451 (+) True G138578
XM_026925132.2 mRNA upstream 3608 23920277 ~ 23931516 (+) True sypb
XM_026925379.2 mRNA upstream 15774 23896065 ~ 23919350 (+) True cacna1fa
XM_026925380.2 mRNA upstream 15774 23896065 ~ 23919350 (+) False cacna1fa
XM_026925047.2 mRNA upstream 40399 23890416 ~ 23894725 (+) True praf2
XM_026925566.2 mRNA upstream 46069 23883151 ~ 23889055 (+) False timm17b
XM_034306735.1 mRNA downstream 5258 23956508 ~ 23989190 (+) True prickle3
XM_034306288.1 mRNA downstream 39557 23990807 ~ 23996817 (+) False fam110a
XM_026925082.2 mRNA downstream 40351 23991601 ~ 23996817 (+) True fam110a
XM_026925083.2 mRNA downstream 40612 23991862 ~ 23996817 (+) False fam110a
XM_034306404.1 mRNA downstream 45804 23997054 ~ 24010074 (+) True mfsd2al2
TU162995 other upstream 178010 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 411148 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 675671 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 2244632 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 2245028 21690025 ~ 21690096 (+) True trnaa-ugc_4
TU163200 other downstream 60367 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 60367 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1320359 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1958325 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1964840 25916090 ~ 25916798 (+) False LOC117597866

Expression Profile