RNA id: XM_034306618.1


Basic Information

Item Value
RNA id XM_034306618.1
length 4094
RNA type mRNA
GC content 0.49
exon number 29
gene id ift122
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21860308 ~ 21903238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTCTTACTTTGATGTCAGTCgccatattggattttttttgttttggtatcCAAGCGTCTGCTCTGCATCTTCATCGCGCTGGAGACCTGTTGGTGTTAACACACAGATAAATTTGAAGTTACAGGCAACAATGCGAGCTGTTCCAACATGGATAGATAAAGTGCACGACCGAGACAAAGTTGAACAATGCATTTACGATTTGGCTTTCAAACCTGACGGCACTCAGCTCATAGTAGCAGCAGGAAACAGAGTTCTGGTTTATGACACAGCTGATGGAACTCTTATACAGCCACTGAAAGGACATAAAGACACAGTGTACTGTGTGGCCTATGCTAAagatgGAAAACGTTTTGCGTCAGGATCCGCAGACAAGAGCATCATCATTTGGACCTCTAAACTGGAGGGAATTCTCAAATACACccACAATGACTCTATCCAGTGTGTTGCGTACAACCCTGTCACACACCAGCTGGCATCCTGCTCCTCAGGGGATTTTGGTCTTTGGTCTCCAGAACAGAAATCGGTGTCCAAGCACAAAGTCAGCAGCAAGATCACTTGTTGTGGCTGGACGAACGATGGCCAGTATCTGGCTCTGGGCATGATGAGTGGTGTGGTGAGCATCAGGAACAAGAACGGAGAGGAGAAGGTGAAGATCGAGCGGCCGGGAGGCACGTCATCGCCTGTCTGGTCTATCGCCTGGAACCCTTCCAAGGATGAGCACCATGATATCTTGGCAGTGGCTGATTGGGGTCAAAGACTCTCCTTCTACCAGCTCAGTGGGAAACAGATCGGGAAGGACAGGCAGTTGAACTTTGACCCCTGCTGCGTGAGCTATTTCTCGAAAGGCGAGTACATCGTGATGGGAGGTTCAGACAAGCAGGTGTCCCTCTACACTAAAGATGGCGTTCGTCTCGGGACCATCGGAGAGCAGAACTCCTGGGTCTGGACCTGCAGGGTTAAACCAGACTCCAACTATGTGGTGGTGGGTTGTCAGGATGGCACTATAGCGTTCTTCCAGCTGATTTTCAGCACAGTGCACGGTCTCTATAAAGACCGCTACGCCTACAGAGATAGCATGACTGATGTCATCGTCCAACACCTCATCACTGAGCAGAAAGTGCGTATAAAGTGTCGCGAGCTAGTGAAAAAGATCGCCATTTACCGCAGCCGGCTAGCCATCCAGCTACCAGAGAAGATTCTAATTTATGAGCTGAGTTCAGACGACTCTTCTGACATGCACTACCGCGTCAAAGAGAAAATCTGCCGGCGCTTTGAGTGTAACCTACTCGTCGTCTGCTCCCAGCACATCATCCTCTGTCAGgagaagAGACTGCAGTGTTTGTCATTTAGTAGTGTGAAAGAGAAGGAATGGATCATGGAGTCTCTGATTCGCTATATCAAAGTGATCGGCGGCCCACCAGGAAGGGAGGGACTTCTGGTCGGCCTCAAAAATGGAGCAATTTTGAAGATCTTTGTGGATAACCCATTCCCTATCACACTGCTGAAGCAGAACACATCTGTGCGCTGTCTGGACATGAGCACGTCTCGCAGTAAGCTGGCCGTGGTGGACGAGCACAACACCTGCCTGGTCTACGACATCCAGACCAAAGAGCTGCTTTTCCAGGAGCCCAATGCTAACAGCGTGGCCTGGAACACACAGTGTGAGGACATGCTGTGTTTCTCAGGCAGTGGCTATCTGAACATCAAGGCGAGCAATTTCCCTGTGCACCAGCAGAAGCTTCAGGGCTTTGTCGTGGGCTACAATGGCTCAAAGATCTTCTGCCTGCACGTCTACTCCATGGCTGCGGTGGAGGTGCCTCAGTCGGCTCCGATGTATCAGTATCTGGAGAGACGCATGTTTAAGGAAGCTTATCAGATCGCTTGCCTGGGCGTGACAGACAGTGACTGGAGGGATCTGGCTACAGAAGCGCTGGAAGGACTGGACTTTGAAACAGCCAAAAAGGCGTTTATCAGGGTCCGAGACCTGCGCTACCTTGAGCTCATCAACAGCATTGAAgagaggaagaagagaggtGAGAACAACAGTGATCTCTTTCAAGCAGACGTCTACGCTTACCAGGGCAAATTCCATGAGGCCGCCAAACTCTATAAGAGAAGTGGCCATGACAACAGAGCGCTCACCATGTACACAGACCTACGCATGTTTGAGTATGCCAagGACTTCCTGGCTTCGGCAGACCCTAAAGACACAAAGATGCTGATGAAGAAACAGGCGGACTGGGCTAAGAACAGTAAAGAGCCACGTGCTGCTGCTGACATGTATCTAAGCGCGGGAGAGAACATGAAGGCTATCGAGATCATTGGAGAGCACGGCTGGGTGGACATGTTGATAGATTTGGCACGGAAGCTTGATAAAGCGGAGCGCGAGCCACTGGCCAGGTGCGCTGAATTCTTCCAGAAGTTGAATCACCATGGTTACGCGGCTGAGACCTACTCCAAAATGGGCGACCTGAAAGCCTTGGTGCAGCTACATGTAGAGGCCAGGCACTgggatgagGCTTTCTCTCTGGTCGAGAAGCATCCTCAGTACAAGGACGATGTGTACGTTCCGTATGCACAGTGGCTTGCTGAGAACGACCGCTTCGAGGAGGCCCAGAAAGCTTTCCACAAGGCTGGCCGGCAAGCAGAGGCTGTCAGGGTTTTGGAACAgcttacccacaatgccgtagTGGAGAGCAGATTCAACGATGCCTCATACTACTACTGGATGCTCTCCATGCAGTGTCTGGATATAGcacgagATAATGAGGAGAAGAGGGAGGAGATGTTGAAGAAGTTTCACAGTTTTCAGCATTTGGCTGAGCTGTACCATGTCTACCACTCCATTCATCGCTACATGGTTGAGCCCTTCAGTTCAAACATGCCAGAGACTCTTTTCAACCTCTCGAGATTCCTTTTCCACAACTTGACCAAAGATGTTCCTCTGGGCATCTCCAAAGTCTATACTCTGTATGCACTGGCTAAGCAGAGTAAGGCACTGGGGGCTTATAAGGTGGCGCGGCATGCCTTTGAGAAGCTCCAGGGCCTGAAAATCCCAGCTCAGTTCCAGGAGAGCATGGAGCTCAGCTCACTCACTGTCCGCTCCAAACCCTACCGTGACAGtgaggattTAATTCCAATGTGTTACCGCTGTTCCACTCACAACCCGCTGCTGAACAACCAGGGCAATGCCTGCGTCAACTGCAGACAACCGTTTATTTACTCCGCCTCCTCTTATGaaGTCCTTCCCTTGGTGGAGTTCTATCTAGAGGAGGGGATCACAGATGAGGAAGCAGTTTCACTGATTGACCTGGAAGTTCCTCGAGCGGACAAGAAGACAACCCGCTGGCAAGAGATGAACAGAGGCGACAGTCAGTCGCTAAGGCTGGATGATGATGTGGAACATCCTGAAGAAGATCCCTTTATGGCCAAACTAAGTTTCGAGGGGGGCAGTGAATTTGTTCCAGTTGTGGTCAGTCGTGCAGTGTTGAGCTCCATGTCTAGAAGAGATGTTTTGATAAAGCGCTGGCCCAAACCTCTGCGCTGGCAGTACTACCGCTCTCTACTGCCCGATGTCAGTATTACCATGTGTCCCTCTTGCTttcagATGTTCCACAGTGAGGACTATGAACTATTGGTTCTCCAGCACAACTGTTGTCCTTACTGTCGCAGACCCATCGACGAGCCCAACTAGCTCACCCGAATAgaatttataaacattataaagtgCGTATTTATAAGGTCCATGGATTAGCCCGAGCTGAATGACTATAAGTCTTCACTAGAGATTTGTATCAGTcatggtaagtgtgtgtgtgtgtgtgcgatggcAGCATTAACGTGGCGATGATCCTCAAGCCATAAGAAAAGCGCCACCTCAGCCGATAGCTCTGATAGGATTAAAGAGATCAGGATACTCAGCCAGTGAAAGGCGATTACAGCATTTGGAAATGGCTGGAGTGTGCAAGAAGACACTAACAAACTTtaacagggatttttttttattccaagaAAATGATAGATGCATCTCTAAAACTTAATAGCAATCTTTTCTTTATTAGTGGGACTAATAAACTAGTGAActataatgga

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0072001 renal system development biological_process
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process
GO:0030991 intraciliary transport particle A cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161242 lncRNA upstream 640 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 20456 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 34986 21824989 ~ 21825322 (+) True G136532
TU161219 lncRNA upstream 62500 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA upstream 62619 21797276 ~ 21797689 (+) False LOC113533123
TU161753 lncRNA downstream 189357 22092595 ~ 22123751 (+) False LOC113533283
TU161800 lncRNA downstream 245385 22148623 ~ 22149777 (+) True G137017
TU161862 lncRNA downstream 401491 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 563529 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 565396 22468634 ~ 22468839 (+) True G137087
XM_034306734.1 mRNA upstream 15350 21825682 ~ 21844958 (+) True LOC113533434
XM_026925798.2 mRNA upstream 35464 21808021 ~ 21824844 (+) True wu:fl23c11
XM_026925235.2 mRNA downstream 648 21903886 ~ 21908552 (+) True LOC113533243
XM_026925693.2 mRNA downstream 197228 22100466 ~ 22103356 (+) True trh
XM_026925329.2 mRNA downstream 207508 22110746 ~ 22123330 (+) True LOC113533283
XM_026925328.2 mRNA downstream 207508 22110746 ~ 22123330 (+) False LOC113533283
XM_026925330.2 mRNA downstream 207508 22110746 ~ 22123330 (+) False LOC113533283
trnaa-ugc_5 other upstream 169816 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 170212 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 170570 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 171717 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 172113 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1345110 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1611348 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1847179 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 2108379 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 2108379 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile