RNA id: XM_026925928.2


Basic Information

Item Value
RNA id XM_026925928.2
length 2550
RNA type mRNA
GC content 0.44
exon number 2
gene id b3galt4
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22145089 ~ 22148333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACCGCTAGATGGCGCCTgaatacacaaaaaaatgcaggcTACAACAACAAATTGTGCTTTGAGTAACCGCACATCTTCCTGCTATTTTTTGGAGGGTTTATACACGTTTCCTGTGTCTCTTACAAAACCAGAACGACGACAGATGCGTTTGAGAAGAGTCCTGGCCACTGAGCTGACACACTGACTGTGTTTATTTGCTAGGCTGGTTTTGTGGAATTGCACAGTGGAGACGAGGAGATAACAAGTTGCAGTCTGAATAACGGGAcggatgtgtatgtgtgtgtcggATGTTTCAGAAAGATAAGACAGATCTTCGTGTTGAAGACATGCTGATGCTGTTATTTGCCTGTGCAAATGTTTTTAGGCTCTTTTGAGTGTAACCTTCAACACAGAACACTTCTTCCCAGCATTAGAAAGAGAAGTGAAACTGCGTGTTAAGAAGTACAGTATAAAGAGAAGCATTTCTGATGGTTTGGGGCTGAACTTGCGTCTGCAGGAATGGTGATCCGTGGTCTGTGGGTTTGTAAAATCCGTTTGGTGAAGCACTTTGGGCTGGCCCAAGTCCTGTGCCTACTGGTCTTTACCTGCCTTTTTGTAACTCTCTTCATCGACTACATTGAGTCATGGGTCACTTCTCTACGAATGAATGGAGTCGGGGGTGGCCAGGGAGGGATTCTTCCTCAGAGCGTGCCCCCTACACGTCCAGAAGAATACCTCCTTATGCCGAGTCCGCTTGTTTGTCAGCGTGCAAAGCCCTATCTCATCACCATGGTGACCTCGGCCCCTGCTAACAAGAAAGCTCGTCAGGCAATCCGTGATACCTGGGGTGGTGAAGTGCAAGTCCGAGGTTATCGGGTCATGACTTTGTTCATGATAGGACAGGTATCAGATACTGTTCTGACCAAACAACTGACAGATGAGGCACGGGAACACGGAGACCTGGTTCAGGGTCGCTTCGTGGACTCTTACGCTAATCTGACCTTAAAGACCTTGTCCATGTTAGCTTGGGCCCGGCGCTTTTGCCCTGAAGCTCGCTTCCTAGCCAAGGTGGATGACGATGTGATGTTCAACCCCAGTGCGTTACTACAGTACATCAACCTTAACTGGGGGGCACAAGAGAGGGAGCTTGAGGAACTCTACCTCGGTCGGGTTCACTTGAAGGTAGCACCGGACCATGATCCAGGCAGCAAGCACTTTTTTCCTAAAGATGCTTTCTCGGGTGCGGTCTTCCCTGATTACTGCAGCGGAACCGCATACGTGCTTTCCCGTCCCGCTGTGCTAAAGCTCTCTCTGGCAGCTGCTGCCTCACCGTTGCCCAAGCCCCTGCCTCCTGAAGATGTGTTTGTAGGTTTGTGTGCCAACACAGCTGGCATCGCTCCCACTCACTGCCCGCTCTTCTCCGGAGGACCACCCATGCCGTATGCACGCTGCTGTTACCAGGCCATGGTGTCTGCCCATCATACTAAACCTGAGGAAATGCTCAACTACTGGGAAGACATGCATTCCAAAGCTCCCTGCTCCTGGGTGGGAGTCCGCTCTTCACTTGGCATTTGTAAATTGAGAGCACTACTAGGATACATGTTATGGCCTACATTATAAACAGAAACCCATGGAAAGTGAAGAAGATTATGCAGTATTTCttagacacgcacacacacttgtacaggCTGAAGAAGTACATGACGAACTACCATGTATAGTTGTTTTATGTGCCAGTTGTCAAATAATAAATGTCtgtgttatttattacattCCCTGTACAAGCACTTGATAGTCAAATGTGTTTCAAACACACTTCATAAACTTCACTATAATGTAGTCTGAATTCATagctaaatatttatatttatttataaatatttaatgttttacaaGTAAGGTGTAAAAAATTTTTCTTGATGCAACTGAAGTGAGCTTGCTGGACATGACCACTGTCTTTGAACGTTCATATTTATGAGGTTCGATGATAAAAACGACAGTAAACAAATGTGTTTGATTTGAATATTTCCTAAGAAGAAAGATGATGTTTGCAAGAGTACAATGGGCAGCTCTCAAACCTGCCCTTCCACAAGAACATATGGCCTTATGCAACAGAAGACTGAAAGATGAGAATGATTTTGACAAAAGCGTGAATAGTTGTAAGAGTAACTTTTACAAAGTTCAATTGCTATTCTTTATATAACTGAATGCAGTGTGTTTTCACGACGTTTTTTATTGCACGGGCTGATGCACATGGTCAAATGGTCAATGCTAATCGATATGGCTGTAAAGCAAAGCAGAATGTAGGTTATTATAGTTTTGCCCACTATTTATACTCCTTCAGTGTCGCATCTAATAAACCTAAATCATAGCTGGGAGCTCTGAAGTCAGGATTTATAGTTATTTTCAGCGACATTTAATCTGTTTACCCACCAAACAAAGGCACTGAGCTAACACTCAGGGTTGTAGGGCGAAGAGTTGAAGAGAAAGCAAACATTAGCTACATAATTTACATGAAGCAGAGAAGTGtgaaattatgcaaaaaaaaaaaaaaaaaaaaaaaaccct

Function

GO: NA

KEGG:

id description
K00715 B3GALT4; ganglioside galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161753 lncRNA upstream 21338 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 285421 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 305237 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 319767 21824989 ~ 21825322 (+) True G136532
TU161219 lncRNA upstream 347281 21797276 ~ 21797808 (+) False LOC113533123
TU161800 lncRNA downstream 290 22148623 ~ 22149777 (+) True G137017
TU161862 lncRNA downstream 156396 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 318434 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 320301 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 322708 22471041 ~ 22471330 (+) True G137088
XM_026925329.2 mRNA upstream 21759 22110746 ~ 22123330 (+) True LOC113533283
XM_026925328.2 mRNA upstream 21759 22110746 ~ 22123330 (+) False LOC113533283
XM_026925330.2 mRNA upstream 21759 22110746 ~ 22123330 (+) False LOC113533283
XM_026925331.2 mRNA upstream 21759 22110746 ~ 22123330 (+) False LOC113533283
XM_034306327.1 mRNA upstream 21759 22110746 ~ 22123330 (+) False LOC113533283
XM_034306843.1 mRNA downstream 15645 22163978 ~ 22170747 (+) True LOC113533433
XM_026925368.2 mRNA downstream 25796 22174129 ~ 22181491 (+) True LOC113533311
XM_026925196.2 mRNA downstream 39487 22187820 ~ 22194724 (+) True LOC113533223
XM_026925194.2 mRNA downstream 48416 22196749 ~ 22205160 (+) True LOC113533222
XM_026925195.2 mRNA downstream 48416 22196749 ~ 22205160 (+) False LOC113533222
trnaa-ugc_5 other upstream 454597 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 454993 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 455351 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 456498 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 456894 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1100015 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1366253 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1602084 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1863284 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1863284 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile