RNA id: XM_026926795.2


Basic Information

Item Value
RNA id XM_026926795.2
length 2536
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113534163
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8394989 ~ 8402547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagactttttCAGAAGGACATTCACTGGAGATCTGGACTTAGTTCCTTGGTTTTAGTATTGACTGGAGTGCAACGACGGGACAATGTGCAAAGTTCTGGACGTCCTTCTGGCTCTGCTAAGTCGTTTCCTGTTCACAGTGCATGGCATCGTGACGGTGTGGCGTGTTGTGGTGGTGAAGGGTGATCCCTGCTATTGGCTGCTGCTGATGGGCGTGGCACTGCTGGGTGTAGAGATGGCCGTTACTATCAAATGCACCCGCAATGCAGAGTGGAAATGGTTCTCTCCCATGGTCTTCCTTTATCTCAGTACTGTGATTCCCTCCATCTGGTTCCTGGAGCTAAACCTGCTGCAGTTCAAGCTGCCAATCAACTCGTCTTCACCTGATCTTCTCCTCCTGTCTCATATCCCCATAGCAGCGGGATTAGCAGATTTGGAACCTGAAAACTGGGCAGCTGGTTTGGAGCAGACCATGCTTATCGTACTGGTACTAGGACGCTGGCTCATGCCCAAAGGTGACATGTCACGTGACCAGCTCTCACAACTCCTCATGGTCTATGTGGGCCTGGGTGCAGACATCCTGGACATTTTTGACACTTTCAAGGAGCCTGAAGTGAAAACCAACCGTGCTGTAATTATTGTGGGGCTGAGCCTCTTCTCCTGGGCCTTAATGCAATTCCCTTTGGTTCTGACACAAACAAATCCCCCTAAATCCCATACAAAGATCCATCTTAAACCCACCAGCCCTGAGTTACTGCCCTGCCCCTATACCTCCTGCTGCTCCAGTGAAATCTGGAGCCTTCTTCTTACTGTGGGGCTTCAGGATGGCCCGTTCCTCGTGTACCGCCTCTACCTGATGCTTAGAGAAAACGTTCTGAATCAGCTGATGATCTTCTTCACGTGTAAGAACATTCTCATTGTAATGCTGGAGCTGTACAGGATTGGTGTGGTACACTTTGAGCTGCACAGGCCTGGGGGGAGAGAAAGATCACCTAATGAAcctcagagacagacagaaagagttGAAGGTGAAAGATTCGAAGTTTTAGAGTCTAGCCGCCAAGGGGTAAATGAAAGCATTGATTAAAGTTGAACTTTTCAATTTAAAGTTCAGATTAAGGTTAGGTGAGAATCTACAATACTGTGAGTAAACAGATTTTCAACAGTCAGTTGAAAGGCATAGTAAGTTCACAGACGTTTCAGCTTTCTACCTCACGTtgcatgttcattcattcatctccaggAACCGCGTTTCCTTTGTCAGGGTTGAGGGcaatccagagcctattccaggaatactgggcatgAGGAATGAATaaaccctgaatgggatgccattcacacactcattcacacctagggacaatgtAGAGTAGCCATTCCTGTCGTCGTGTCCTCACATTGTATTATGTGTTGGCTTGTACATCACTAAATTATCTCAAACATTCTGGTTTTCACCATGATATTCCAAGTTCTAATTATGATTTTTCAATATTCTTTTGTTCCTACCTGCTGTTCTAACTTGATATAGCAAAAAAGGCGGAATAAACCattgaaaaaagtttttcatGGGACTATTTTTGTGCCATTTTAGTTCTGTATGGTTCAGAGGTGTTATTCATTATATACCGCCTGGAGTTTTATTACAGAATAAGCAATACTAGTGCCagagacaaacaaaaaagctaCAGAGAGCCAATTAAATTAGGAAAATAGCAAACAAATGTTCTTTTAAAGGCCCAAATCTTTGTATTTAAGTACCTATTAACTGGCTGCTCTCAGAtcctattatttaattaaagacaGGCTACAGCAGTTAATTCTATAGATAAAAGATTCATAGATATTGCTAATATTAATTGTAATACAAATATATCTTGTGTACTACAAATGCCTAATGAGAGAGAACAAGATCTTGGTTGCTTCCAATTAGATGTTGAtcatttccaataaaataaaaggtcaCTAACTATTTcttatatatacagtttaaTATAAGCCATTGCTTAAAGTTTAACTGGAAATGCCACCATAGTTTGTCcaaaaagtttatattttaacTAATAACAACATTCACTTAGACAATACGGATTTTTATTGAATGCTTCCAAAAACATATTTCTAACATTCTTGAAAACAGTCATTTGGAACAGTGTGAACTGGACAGAAGCCTTAAGAACCATGAGATGGCAGTGTTCGCGTATTATTTAAGCCACCATAACAAAGACAGACAGGGCACAACTACTTGCTTGCTAACATcaaatgaaaccttttttttttgtctggggTTGATTAAAGAGCTGCAAAAACCCTCTGTTCATACAGCTTTTATGAAGAACACGAATCAGGCAGATTGTGTTTTTCTGAAGATGCGCAGTAAGAATCATTCAGTGTCAGGTCTTGTGAACATGGTCTCAGTCTCAGTTACTACATCATTTCCATGATATAGAGTATTCTCTATGCTCAAAGCTTTTGGGAAAATCTTTCTACCTCAAAATCTACTGTCCAGGTATAACCTGAAGATTAATTAGAGATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152673 lncRNA upstream 164853 8228740 ~ 8230136 (+) True G129218
TU152621 lncRNA upstream 209801 8183169 ~ 8185188 (+) True G129170
TU152569 lncRNA upstream 266559 8128161 ~ 8128430 (+) True G129125
TU152540 lncRNA upstream 314712 8079967 ~ 8080277 (+) True G129104
TU152534 lncRNA upstream 323047 8071732 ~ 8071942 (+) True G129098
TU152785 lncRNA downstream 84684 8487231 ~ 8487447 (+) True G129318
TU152875 lncRNA downstream 143223 8545770 ~ 8545996 (+) True G129401
TU152881 lncRNA downstream 147222 8549769 ~ 8549982 (+) True G129407
XR_004578601.1 lncRNA downstream 277095 8679642 ~ 8717232 (+) False LOC117597837
XR_004578600.1 lncRNA downstream 277095 8679642 ~ 8716929 (+) True LOC117597837
XM_026914400.2 mRNA upstream 93316 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026916892.2 mRNA upstream 272103 8117577 ~ 8122886 (+) True LOC113528372
XM_034306715.1 mRNA upstream 435772 7954723 ~ 7959217 (+) True si:dkey-20d21.12
XM_034306604.1 mRNA upstream 473248 7916766 ~ 7921741 (+) True c8h1orf174
XM_034306638.1 mRNA upstream 485267 7873393 ~ 7909722 (+) False cep104
XM_026912711.2 mRNA downstream 80536 8483083 ~ 8541426 (+) True ajap1
XM_034306375.1 mRNA downstream 80536 8483083 ~ 8541426 (+) False ajap1
XM_026925547.2 mRNA downstream 499701 8902248 ~ 8915811 (+) True LOC113533404
XM_026916436.2 mRNA downstream 547667 8950214 ~ 9002824 (+) True sema3b
XM_026916445.2 mRNA downstream 547667 8950214 ~ 9002824 (+) False sema3b
TU152708 other upstream 82333 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 423240 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 963992 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 967432 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1589679 6756763 ~ 6805310 (+) False phf19
TU153960 other downstream 1955399 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2153971 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 2467587 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 3219755 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 3219763 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile