RNA id: XM_026927465.2


Basic Information

Item Value
RNA id XM_026927465.2
length 5242
RNA type mRNA
GC content 0.43
exon number 22
gene id mov10b.2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10056229 ~ 10077521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTATGCACCTATAAACGCATTAGGATGCAGGAATAGGTTCGTACATGTGCTGATGTAGACATGAGGAGGCGTTAGTCAGAGCTGGGTTAAGTTTCGTTTCTCTGTTATGGACGGGGCTTGTGGGGAATAAAGCGGTTTGATGCCCAGCCCTGTCACTGAACTGCGCTGTGAGCCTGAGACAGACTACATCCGCGTTACACCCTCACTGCATTCACCTGCTGTTCACCATGCGACCTTCTCGCTCTGAGGTCCGGGCTGTCGGGCTGGACTTTATCGAGTTTTTACACGAGACGCAGAGATTCAGTGTCACTCAGAGAGATGAGCTTCAGCACATCTACAACACCGACTTCAGGAACAGAGAAGGTGCCAGAGATCCCAACTTCTCTTCAGTGCTTTTTGTCCTCAGGACGAGCAACAGAGCGCGGGTCACCCGCGACCGACACGTTTACTTTAACGCTAAGATACGAGTGTTAAAAGATCAGTGGTGGAAACCTAGAGACACGCAGCCAAGTGGCAGTGCTGCTATTCTGAGCGTCTCAAGATCTGCACCTCATGATGCTCTGGAAGCATTCTCTCCACCTCCTGGACCTGAGGGTGGTGTTAGAGCCAGAAGGAAACTGGCTAAGGAGATCCTCAAGAAGCTCACTAATGAGAgAGCAGAGTTTGTGGCTGATAAAAATGGAGTTCGGGTCAGCTCTGAGATGGAGATCGTGGATGGGAGATTGCGCTTGTGTGTGGAGAGTGCAGAAGTTTATGAGTGGAAGCTGTTTGTTGAAAACACAGGGCAGTATGCTGTGAATTTCACCTACTACTCACCACTGCACTGGATCCACTGCTTCATGTTTGAGGACTCCAAGAAAGTCACACGCAACAATCCCCTGAGCCTACGTCCTGGTGAAAAGTATGAGGTCACTGTGAAGTTCCGTTCAAAATATGTGGGTATATACCAGGCTACGGTGGCCTTTGAGTTCACGCTGAGCAAGGAAACAAGTCCCAGGTCATTCCACATCGTGCGCTATATTGAAGCTGAGTTCAGCACACAGCTAGCTAGAGAGCTGGCACCCATCGAGCCCTACACACCCTTCAGACTAAGCAGAGACCAAACTGATGATTTTACTGTGGATGAGGGAGAGCGACCTGACAACCTGGCCATACAGCGTCTTCAAAATGAGGTCCCATTGCTGCTGTATAAATGCCCAGACTATATCAACGACCTGATCGACTTTCTGAAAGCCCCACGTTGTCCCGAGGCCTATCTGTTGCAAAAGAAGTCTCTACTGGAGTCTCCTCTGGATTTTTATAACTACACAGAGCGCTTCCAGGTTCTACTGTACCTGGAGGAACGTCAAATGGAAGTGGACATCAAGAGATATGATAAGCATGATGTCACCATGAAGAAGGACAGCCACAGCAAGAAACTGTTGGTGCTTGAGGTTCCAGGTGTTTCTGAAAATCGTCCATCGGTGTTAAGAGGAGATCATTTGCTGCTGACTAAGTCTGATGACCTGAATTCACAGCATAAAACCAAATACAAAGGCTATGTGCATCGTGTGGAGCTCGACCGACTCAGACTGGGTTTCTCACAGAGTTTCTTGGCCCGTTTCATAGACAACATGAAGTTTCACGTGGAGTTCACCGTTAACCGGCTACCGCTGAGACTCCAGCATCGTGCCGTGCAGCTGGCTGTCCAACACAAGCTTAAAGAGGTGCTGTTTCCTACAGAATCAAATGTCCCAATCTCAAAGCCACAGCTTTCACTGAGTTTGTTTGACAGAAAGTTGGAGCAGAACCTTGAGCAATACACTGCAGTGTGCAACATTGTAGCTGGCGTGTCTAAGCCAGCACCGTACCTGGTGTTTGGACCTCCTGGCACAGGAAAAACAGTTACTATGGTAGAAGCCATTAAACAGGTGGAGAAGTGTTTGCCAAATGTGCATATCCTGGCTTGTGCTCCTTCTAATAGCGCTGCAGATCAGCTGTGCGAGAAATTGCTGCTACATGTTGACACTCACAAAGTGTACCGAATGTACGCCAGCAGCCGCAGCCCCGACCAAGTGCCCCTCAGTCTGCTGGAGGCTAGTAATCTTAAAGGTGATATGTTTGAGTTTCCATGTAAAGAAGAGTTGATGACATATAAGATTGTGGTCACCACTGTGGTTACAGCTGGCAGgctggTCACTGGTGGGTTGCCTGCTGGTCATTTCACTCATATCTTTGTGGATGAAGCTGGCCATGCAGTGGAGTGTGAGACCATCATTGCCATAGCTGgtcTGCTGCGTGCAGAGACAGGGCAGCTGGTGCTGGCTGGAGATCCGAAGCAGCTTGGACCGATTCTAAGGTCTCCATATGCTATCAAATATGGCCTGGGTCTGTCACTTCTGGAGAGGCTGATGACTAAAAATCCACTCTATAAGAAAACAGATACTGGATTCAACAATAACTATGTCACCAAGCTACTGCGCAACTATAGGTCTCACAGGGCAATCCTGAAAACTCCTAATGAGATGTTTTATGATGGAGAGCTGCAGCCATGTGCAGATGAATTCAGTACCAACTTCTACTGCAACTGGGAACACCTTCCCAAAACGggtttCCCTCTGATTTTTCACGGTGTGCCAGGGAAGGATGAGCGTGAATCAAACAGTCCATCTTTCTTCAACACCAGTGAGATCACCGTTGTCGTTGACTACCTGAAAAAACTGCTGCTGTCACAGGGCAAGAAAGGCATTGCCAGGATCTCACCCAAAGACATTGGCATCATCACCCCCTACAGGAAACAGGTGGAGAAACTGCGGAAGGCCATCACAAAATGTGATAAAGAGCTGAAAGACTTCATGGGCATTGAAGACCTGAAGGTGGGCTCAGTGGAGGAGTTTCAAGGTCAAGAGAGGAGGGTGATCATCGTGTCGACTGTCCGCAGCAGCGGTGAATACCTCGAATTAGACTCCTTTTTCAACATTGGTttccttaaaaatgaaaagAGGTTCAATGTTGCTGTGACACGAGCCAGGTCTCTGCTCATTGTTGTGGGAAACCCTGTCATTCTCAGTACTGATACAACCTGGTGCAAgTTTATTGATTACTGCACTGAAGAGGGAGGCTGTACTGGTTTCAAGCGCACCTCTGTAGAGGGCACAGAGGAAGTGGTGGCTCGGATCATGGCCCTCAGCATCCATACAGTGGCTGAAGTGGAAACTGAGGAGAGTGCCGTCCAGCAGTATGTAAACCCCGAGTGGAGGAATGAACAGTAaccctgagaaacacacacactctctctctctctctctctctctctctctctctcttgccagTTTATAATTTTGTAGGGTGTTGTACCTCCTTTTGCCTTCAGAACAGCACAAATTCCAAATATTGAAATCCCACTCTAAACAGAGCTCAGCAATTCTTTCCAATTTTTCTTTCCAATCCTCAGCAATTCTTTATGTGAGATTTGCAGACTGTGCTGGCCActattcagtttaattcagttttatttctatagcacttttaaccatggacattgtcccaaagcagctttccagaaaAGCTAAAgcattaaagcaataaaaaagtCCCTGGCATGTTCCTGAAAGCATTCAGCATCGATACATACCTTGTGACATGGCGCTTTGCTATGCTGAATGTGTCTCTGAGTGTGTTGATAAGCAGTAGCCATAAAGGAATAAAGTTGGGCAGCAGTGATGAGCAGGTAACCGTGTGCACTTCCTTATCAAGGACTCGGGGACGATAGGAACGAGCATGCCCTGTGCTTACTATCATACcgcatttatattaattaagatCACCTGTTTTACCCATTCCAACCCCCAACTAATCACTAGCTGATGCTAGAATTGCTAGTTTACGCATATGACTTGCAGTTTGTGTGAAGGTGAACTTTATAATAATCTGCCAACTCGGTGTAAAGAAACAAAGCACatttggccctttttttttactgatgtcccaaatagagtgtgtgtaatttgcATCTGCAATctgataaactgtgtgtgtgatttgggggCATGCTGCAGGTGATTTACTAAGAAGAATTGATGATGTCACATGCAAAGCAGTAGaagaaaacaatattaaatacaatataaaaattacactgtaacacagaTATGTGTATAAAGACACTGATATGTGTGAATGAGgcaaaatacaacacaaatgCAAACTAAGAGTACACATGAATGTCTAATATGTTcatatgttaaagaaaaatctttACAGGGTGCGATCGTGTCGCAAATATTTAGTATGATACCAACTTTACCGTAGTCCTATTTACAAGAAACTTTCTCAATATTTTGATACTGGGACATAATATTTGAGAAACTTTATAAAACCATATAATAATAGTTTCGTTTCAGAAATTGAtttccacaaatttaatacctgccctttgTATGTATCAATTTGCATCATGTATGAAATGACTTACATTTATGAAATGACTGAATAATTGACACtaaattaacatattttatatatgttatataaaggATTAACATcctttaaattgtttatttattaagacaAACCTGAAAAATGGATgctttattttgctcatttgaaaGACATGATCACCTGCAGAATGTGAGTAAATaagtttgcacatttttttcaggttttatcAAATGTTCATGTGCTGTTACACATACAGACCTTTAATAAATCAGggccttattttttttcttctttttctcaccCTCTGTTGCCACCTTCTGGGTATTTATcataaacaattacatttaaCCTACATGTTCTGCCTCTCCATTTTTAGTTTAAGTCCACAGAAGTTGCACAGAAAgaatttattatgaattatgaaaacTTTTACATCATAAATGATTCAGAATTATACTCTAATGTTGATATAATtgaaatatgttgaaatattgaatataaatacagatcaTTGAAATTTGTTGAGATGACATTAAGAGCAGGGACCATTTGCCATCAGTGCCATCAGAATGAAATTTTCTCACAAAGTTAGTACAGAAATGACAGCTGAATGTCTTAATGAAGTATAAATTATTTCTGCAGAGATTTTAttaatcaggattttttttttgtatcacaGCTTTTATTAagagtatatatttttttaaatgtgtctgAAATGTTTGAGGAGAATTTTGAATTTATCTGGATATTGTGTCCAAAAAATAAGAGTTGGAATCTTattaataaagtataataaaatgtttatcagtTGTTCGAA

Function

GO:

id name namespace
GO:0035279 mRNA cleavage involved in gene silencing by miRNA biological_process
GO:0000932 P-body cellular_component
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K18422 MOV10; helicase MOV-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153789 lncRNA upstream 22664 10033350 ~ 10033565 (+) True G130231
TU153572 lncRNA upstream 340361 9715656 ~ 9715868 (+) True G130021
TU153547 lncRNA upstream 383894 9672067 ~ 9672335 (+) True G129996
TU153546 lncRNA upstream 391544 9661246 ~ 9664685 (+) False LOC113532719
TU153514 lncRNA upstream 453697 9600195 ~ 9602532 (+) True G129971
TU153848 lncRNA downstream 8040 10085561 ~ 10147134 (+) True G130285
TU154002 lncRNA downstream 441919 10519440 ~ 10524699 (+) True G130415
TU153999 lncRNA downstream 469458 10546979 ~ 10549067 (+) True G130412
TU154034 lncRNA downstream 605608 10683129 ~ 10693414 (+) False tmem51a
TU154035 lncRNA downstream 618313 10695834 ~ 10696020 (+) False tmem51a
XM_026919256.2 mRNA upstream 25041 10013340 ~ 10031188 (+) True wnt2bb
XM_026922828.2 mRNA upstream 91133 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026924266.2 mRNA upstream 390536 9660815 ~ 9665693 (+) True LOC113532719
XM_026914347.2 mRNA upstream 397670 9651871 ~ 9658559 (+) True ddx20
XM_026913306.2 mRNA upstream 419206 9624300 ~ 9637023 (+) True rap1aa
XM_026923227.2 mRNA downstream 90864 10168385 ~ 10279934 (+) True si:ch211-254n4.3
XM_034306371.1 mRNA downstream 136924 10214445 ~ 10279934 (+) False si:ch211-254n4.3
XM_026918623.2 mRNA downstream 435918 10513439 ~ 10541772 (+) True slc16a1b
XM_034306548.1 mRNA downstream 435918 10513439 ~ 10541772 (+) False slc16a1b
XM_026918615.2 mRNA downstream 435920 10513441 ~ 10541772 (+) False slc16a1b
TU152708 other upstream 1743573 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2084480 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2625232 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2628672 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 3260153 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 280425 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 478997 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 792613 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1544781 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1544789 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile