RNA id: XM_026927548.2


Basic Information

Item Value
RNA id XM_026927548.2
length 3306
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC113534601
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9521454 ~ 9537110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCGAAGATGGCGGCGCCGTTCACGCGTCTGGTCCTCGGTATCTACCTTCATCTCGTTACGTAGTGACGTGCAGTGTTTTGGTTGAGGAGAAGTTGCAGCTCCATCCCCTTCCACTTGAACCAACTTTTACCCCTTTTACTGGGAATTCTCACTTGGAAAACTTTATAGAACTGAGGGGAGACTCCACACGTCATTATTTTGCTTAGGTGTTGTTTTATCCAGCTCGATGTTTCGGTAGAGGATGAGTCGTGCTGGAATATGAAGCTCTCTGGGCGGATGGTGTAGCGCTAACGCTTAGCTACGTTTACACCCGatacggagtgtgtgtgtgtctctgcactTACTGaTCCACATCATACTTCATCATCCTGCACTGCCTGTGGAAGTGTCGCTCCCCTCCGTCGCCTGTTGTCATGGCGCCCAAGGACATCATGACCAATTCACACGCCAAGTCCATCCTGAATGCCATGAACGCCCTGAGGAAGAGCAACACTCTGTGTGACATCACCCTGAGGGTGGAGAACACAGACTTTCCCGCACACCGCATCGTGCTGGCTGCGTGTAGTGATTACTTCTGTGCCATGTTCACTAGTGAGCTGGCAGAGAAAGGGAAGTCCTTTGTGGATATTCAGGGTCTCACAGCCTCCACCATGGAGATCCTGTTGGACTTTGTTTACACAGAGACGGTGTTGGTTACTGTAGAGAATGTGCAGGAGCTGCTTCCTGCTGCCTGCCTGCTCCAGCTTAAAGGTGTGAAGAGGGCTTGCTGTGATTTTCTCAACAGTCAGCTAGACCCATCCAACTGTCTGGGCATCCGAGACTTTGCAGAGACACATAACTGCGTGGACCTGATGCAGGCAGCAGATCTTTTCTCGCAGAAGCACTTTTCCGAGGTGGTGCAGCATGAAGAGTTCATGCTCCTCAGTCAGAGCGAAGTTGAAAAGCTCATCAAATGTGATGAGATTCAGgtggaCTCTGAGGAGCCAGTGTTTGAGGCAGTGTTAAATTGGGTAAAGCACAACAGGAAGGAACGAGAGCCATACCTGGCAGACATGCTGGAATATGTGCGCATGCCTCTGCTCACGCCACGCTACATCACTGACGTCATCGACTCTGAGCCTCTTATTCGTTGTAGTCTAGCCTGCCGAGACCTTGTGGATGAAGCCAAGAAGTTTCACCTGAGGCCCGAGTTACGCAGTGAGATGCAGGGGCCTCGAACGCAACCCAGACTAGGTGCCAAAGAAGTGCTGTTGGTGATCGGTGGGTTTGGCAGTCAGCAGTCACCCATTGATGTTGTGGAGAAATATGATCCCAAAACCCAGGAGTGGAGTTTTCTACCTAACATTGCACGGAAACGCCGCTATGTTGCCACTGTTGCCCTCAATGACCGTGTGTATGTGATTGGAGGCTATGATGGTCGGTCACGTCTCAGTTCAGTCGAGTGTTTGGACTACACGGCAGATGAAGATGGAGTTTGGTACACCGTCGCCACAATGAACGTTCGACGAGGCCTGGCAGGAGCAACTACACTAGGAGatatGATTTACGTGGCTGGGGGTTTTGACGGCAGTCGGCGGCACACCAGCATGGAGAGATACGACCCGAACATTGATCAGTGGAGCATGCTGGGGGATATGCAGACAGCCAGAGAAGGAGCTGGGCTTGTAGTGGCCAGTGGTCTCATTTACTGCTTGGGTGGTTATGATGGTTTGAACATCCTTAATTCGGTGGAACGCTATGACCCACACACCGGTCACTGGACTAGCGTCACTCCCATGGCTAACAAACGTTCAGGGGCAGGGGTGGCTCTGCTAAATGACCACATTTACGTAGTTGGAGGATTTGATGGTACGGCTCACCTGTCCTCTGTAGAGGTATACAATATCCGGACAGACTATTGGACTACTGTGGCACCCATGACCACTCCACGCTGCTATGTTGGAGCCACCGTGCTTAGGGGACGACTGTACGCCATTGCAGGATATGATGGCAACTCCCTGCTCAGCAGTATCGAGTGTTACGACCCTGTACTGGACAGCTGGGAGGTAGTGACCTCCATGGCTACACAACGCTGTGATGCAGGGGTTTGTGTGCtcagagaaaaatgaaaacatggctgccagACACTAAGCAGGCAAAGACTCACTGGAATTGGTTTTTGGAGTATTGATTGGCAGCTAACACCTATGGACTGGTCTACTATGTTGCCATGACTATGTGCCACGTGTATTAGCATGGAAGAGGAAGCAACCTGGAAACACAGATCACATGAACACCCCTTTTATTATTATGCTGTAGTTTTACCTTCAGACCTTAGTTGTGTTGCCATGCTTGTGATGGGCACACTGTGTTGTCTGCGAAAATGTCTGCACTCTCCATCCATTACCCTGTGGTTTTGTGGTGTCTGAGGTTATCTGTGAGGTTCATGTGGATGAAGTCTACgaagtgcaatattttaaactaCTGATGTGTTAAAGACTAAAAATGCAGAAGAACACTATAATGTGTGCTTCAGCAGTTGCTGCTTTTATACCTTATTGCCCTTGTGGGCAAATATTtcaacacatcacaccacaggCCTCCTGGCTTTGCTACATAGGAATACAAGGTATGATTGAAAATATGGACATGTTAGGATTGTAAAGGAAGACATCACTGCTTCTGACTGGAAATGAACAATGTACAAGGTTTCCATGTTGGCACCAATATGTCTTCACTGTCCTTTCCTGCTTTCCTGGTCTCCCAGCCTGTATGAAGAGAAGTAAGAACCCTGCTCATTGCCTCACATTTAAAGGTACAGTaagtagaaataaataaatgttaagaaaatattattaacacTACTAGAAGTCTGGaatagtttctttcttttttttttaatgaaggaaGTTTCAAACCTTTTCCACAGTTATGTGACCAGCTTTGTTTCATAGCTAAGATGCTAgcaatgaataataaaaaatatgtggGGGAAAAGTTACTTGGTGTACCTTTAAATCATTGGGCTTGCCATACAGTGAACACCACTATCATGTTTGTACTGTGtattaagccttttttttcagtttaagtGCTTTTAAACGTGAATCTGAATGAATGTATGGATTTACTTAAATGTTTGTTAAACACAGATTTCAAATATCtgttaattatttgtattattatgaacaaaaatgctcatttttatgaGTGACCAATGACATTTGCTGTTGTGTAATGTTTTGCGATATGTATGGTGCCAGGACTGACATAATTGTAAGTTGAATAGTTTACCACCAAGTGTAATAAAATGTCTGTACATCA

Function

GO:

id name namespace
GO:0048208 COPII vesicle coating biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10450 KLHL12, C3IP1; kelch-like protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153354 lncRNA upstream 25724 9450562 ~ 9495730 (+) True G129849
TU153371 lncRNA upstream 50177 9462088 ~ 9471277 (+) False cebpb
TU153374 lncRNA upstream 50237 9462088 ~ 9471217 (+) False cebpb
TU153355 lncRNA upstream 67045 9453034 ~ 9454409 (+) True G129850
TU153327 lncRNA upstream 183504 9324708 ~ 9337950 (+) True G129831
TU153514 lncRNA downstream 63085 9600195 ~ 9602532 (+) True G129971
TU153546 lncRNA downstream 124136 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 134957 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 178546 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 496240 10033350 ~ 10033565 (+) True G130231
XM_026922619.2 mRNA upstream 2196 9510939 ~ 9519258 (+) True adipor1b
XM_026922629.2 mRNA upstream 2196 9510939 ~ 9519258 (+) False adipor1b
XM_026929048.2 mRNA upstream 50175 9469630 ~ 9471279 (+) True cebpb
XM_026914420.2 mRNA upstream 225971 9294380 ~ 9295483 (+) True mc3r
XM_026914409.2 mRNA upstream 340624 9175099 ~ 9180830 (+) True LOC113526950
XM_026927664.2 mRNA downstream 1723 9538833 ~ 9543279 (+) True tuba5
XM_026915443.2 mRNA downstream 10196 9547306 ~ 9573038 (+) True kdm5bb
XM_034306582.1 mRNA downstream 10916 9548026 ~ 9573038 (+) False kdm5bb
XM_034306581.1 mRNA downstream 12526 9549636 ~ 9573038 (+) False kdm5bb
XM_026929718.2 mRNA downstream 37272 9574382 ~ 9582740 (+) True LOC113536035
TU152708 other upstream 1208798 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1549705 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2090457 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2093897 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2725378 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 820836 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 1019408 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1333024 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2085192 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2085200 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile