RNA id: XM_026927870.2


Basic Information

Item Value
RNA id XM_026927870.2
length 3252
RNA type mRNA
GC content 0.43
exon number 13
gene id si:ch211-198n5.11
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11588824 ~ 11596613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGAAAGTTCCGTTTAACGTACCGTGGTCCGGAACGTTCCGTGTGGTGTTTTGTTTCCCTCCAGACACGTTTGAATGTATCACGgcgcaaaaataaaacaactttggACTCTTGCAGCCATGTACCGTTGTATGTCAGGCTTATTTCGAGTAAATGGAAGGACATGCTTCACAAACCAATTATGCACCCAAAGACTGTCAAGGACCACAGAAAAGAATTGCTGTCTATGTCAGTGCACTCATATCAGTTCACTGAAATACCTGAGACACAGTCTGCAGCCCCCCTGCACACATCAGGCAGTGTTACACCGGTGCATAAGCTCGAGTGTACGCAGAAGAAGCTTGCCAAGTGCCTTTCCAGTAGTAGATGGAGCATGCCAGCTTATTCACAGACATGTATTTGAAGCAAATTTACAGAACAGCCAGGCATGTCAGCAAAGgtATCTAGAGCTTAAGGAGAAAGTGTTAAAGGGAGGTGGGGAAAATGCCATTGCCCGACATACACAGAGAAACAAGAAGGTTCTAGTCAGAGACAGGCTTCAAATGCTgttggatgatgatgattatcTAGAGCTGTCTCCCTTTGCTGGAATGGGTTTACCCTATGGGGACATCCCATCAGCTGGCTGTCTCACAGGTATTGGTAAAATAAATgggctgtggtgtgtgttcatCGCTAATGATGCCACGGTGAAAGGAGGCACAGCATACCCTATTACAGTAAAGAAACAGCTTCGGGCCCAGGAAGTGGCCGTACAGAATCGGCTCCCCTGTGTCTACTTGGTTGACAGTGGGGGTGCTTTTTTACCTCTTCAGTCAGATATATTTCCTGATAAGAACCATGGTGGCCGTGTTTTTTACAATGAAGCTATAATGTCAGCAATGAAGATTCCACAGGTGGCAGTGGTGTGTGGGTCATGCACAGCTGGTGGAGCCTATGTCCCCACTATGGCAGAGGAGGCGATCATTGTGCACAGGATAGGGACCATATTTTTAGGTGGCCCTCCACTAGTGAAAGCTGCTACAGGTGAAGAAGTGACTCCTGAGGATCTTGGAGGGGCCAGGGTGCACTCAGAGGTGAGTGGCTGTGTTGATCATTTTGCTGCTGTGGAGAGTGAGGCATACGAGTGTACAAGGAACATCATCTCCACTCTGAACTTCAAGCTCCCAGAGGAGGACAGTGCTGAGATTGAGGAGCCCCTGTATAATGCTGAGGAGCTTATGGGCCTCGCACCAAAGAGCTACAATTTCAGCATGGATGTCAAACTGATTGTGAGTCGGCTGACTGATGGCAGTCGGTTTCAGGAGTTTAAGTCTCGCTATGGTACCACTCTTGTGACTGGATTTGCCAAAATTGAAGGACATTTGGTTGGCATGGTTGCCAATAACGGCAAGCTAACATATGAAGCCTGTCTgaaaggaagccattttgttcagcTGTGTGAGCAAAGAGACATCCCTCTCATCTTCCTTCAGAACACGGCCCCAGAGCCTTTGCACACTCTCTCCCAAGACAAGGCAGAGTCCAACACTATGGTACTCAAAGCTCAGGGATCCATGATGTCTGCTGTGGCCTGTGCTTCTACTCCTAAGATCACTGTGGTCATCGGAGGCTGCCATGGTGGTGACAGCTATGCTATGTGTGGAAGGGCTTTTGACCccaacttcctgtttctgtggCCCAATGCTAGAGTGTCGATTTTAGCCCCAGGCCACGCCGGTGGATTGGTGCAGGATGAAGAGGAGGCCAAACACATTAATGAGCAGCTGAAAGAAGAGAGCTCAGCATTCTTCTCATCGGGCAGACTATGGGACGATGGCGTGATTCTTCCACAAGATACAAGGAAGGTGTTGggcaaatgtttaaaaatcatcAAGCAACAGGAGTACCAGCTATCTCGAGGAAAACCAAAATCTATCCCTCTTCGAATGTAACATCTatggaaaaaaacatcttaCTAAAAATGTTTGGGCTACTTCCAATCATGAGGAATACCCCTGTAAACCAGCAAGGCAGGAGCCCTGTTTTtgcatggagaaaaaaatatatatatttgtacatataaatgtattttatgctaCTGTGAACATCAAGTGCTCTCAGCATAGGAAAGAGTTCTTTGCTGGCATTACCATGGTTCATATCTgttaacaatattttttaaaagcttaattctttttaattttaaattttaatttttagtgtCTTCCAACTAAACTATGGCGTCATCTGTGCAATTGAatatgagatgtttatttgtggtgtggatatactgtatatgcagcTATTTTTTCACTTGACAGTATCTGTAGATATTCATAACAAGCTGGTCAGTACCAAATCACCTGCAGGCAAATTTAATCGCCTCCTCTGTTCaagggtgagagtgtgtgtgtagaggatgCTGTTCTGGCTTGTTATTGTGTCTGAAAAAGAAGCCCTTCTAGGGCCAGGGTCCTTAACTCCAGTCCTGAGGACCCACTAATCTGCACAGGTTCCCTGTATGGGGAAATATAAATGGTTAGTAAGGAAAACTTGAAATTGTGCAGGGCATTGGGTCCCCAAGATAAATTAAGAAATCCTGCTCTACAATCccagaaaaaaagtgttttctaAGAGTTTTTTAGATGGTTAGCTTCCTAAAAGCATCCAGTGTAGAACCTGCTCCTAAAGGGAAACACACTGTTTTAGGGTTCTACGTAGAATCTTTAATGGTTCCTGCAGAGACACCAACCGAGGAAAGCTGTAACCTTTTTTAAGGTGTAGGCACAGCCGTTTATTTACTTAATGTATTGGACATGTATGCCTTTTACAAAACAAACTGAATGAAAATGACAAACGCTAAAAATTATTCAGAATCAGGCTCTATAAAACTATCATTCTTAGTAACTGTTGTACATACGCTCCTAATCAAAAGGGttccctgtgttttttttgggttttttttggatagttaaggatCATTGCCTTCCTAAATGGGTTTACTTGAACCCCTCTCCGATAGGGAAACCCAAACTCTCAGTAGTATGGTTCTGCAGAGAGTCTTTTAATGTTCAACCCTCACGATAAAACGAAGAAACATGGTGCTAGACTGAACTTTtctttctaagagtgtgtgttgcagttACTAATTGCTGTATTACTTTTTCTGTAcatgaataatattaaaatttctCCTGTGGAAGAAATGCAGTAGATGGCTGTTGAATTTTACCTTTTAATAAAGCTGAAAAATGTTAGCTTACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154619 lncRNA upstream 36793 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 229444 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 640478 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 672199 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 677449 10911164 ~ 10911375 (+) True G130611
TU154744 lncRNA downstream 81290 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 120219 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 385152 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 396206 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 397801 11994414 ~ 11994800 (+) False foxp3a
XM_026914924.2 mRNA upstream 140940 11436385 ~ 11447884 (+) False cdkn2c
XM_026914915.2 mRNA upstream 140940 11437452 ~ 11447884 (+) True cdkn2c
XM_026914932.2 mRNA upstream 140940 11442035 ~ 11447884 (+) False cdkn2c
XM_026922776.2 mRNA upstream 299906 11219554 ~ 11288918 (+) False elavl4
XM_034306312.1 mRNA downstream 1168 11597781 ~ 11608557 (+) False LOC113538016
XM_026932941.2 mRNA downstream 1297 11597910 ~ 11608557 (+) True LOC113538016
XM_034306314.1 mRNA downstream 1739 11598352 ~ 11608557 (+) False LOC113538016
XM_034306313.1 mRNA downstream 2344 11598957 ~ 11608557 (+) False LOC113538016
XM_026932859.2 mRNA downstream 2356 11598969 ~ 11608557 (+) False LOC113538016
TU154218 other upstream 714807 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 1025263 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 1230509 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 3276168 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 3617075 7968235 ~ 7971749 (+) True LOC113526371
XR_003403321.2 other downstream 25689 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 25697 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 25697 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 25697 11622310 ~ 11633844 (+) False LOC113530800
TU154756 other downstream 109042 11705655 ~ 11709432 (+) False porcn

Expression Profile