RNA id: XM_026927919.2


Basic Information

Item Value
RNA id XM_026927919.2
length 6831
RNA type mRNA
GC content 0.44
exon number 21
gene id usp11
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4935966 ~ 4961116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATATACCAGTCCGGTGTTTCTATGCAGCGGGTGACTCTAGGAgctttttcaaatatttatgacTTATGGTTATGGCTACTAGCAGCACCGCGGCGGCCGCAGAGCCTCCTGGGTTAGAAACACAGCGGCGAGAAATCGAGAGTTTAATCCAGAACCAGGAGCTCCGGCTCGGGGACTGCTGGTATCTGGTGGGCAGAAGATGGTTCGGGTTGTGGAACGAGTACGTGAAGAGCGGCGATCAGAACTCCCCGTCATTTCCTGGAAAGATCGATAATACAGACCTGTTTGATGATTTGGACTCGTACAGGctgaaagagaggctggtagaAAGCGAGGACTTCATCCTGGTCCCAGCAGAAGCCTGGCGTAAACTGCTGTCATGGTACGGCATGGTGGATGACCAGCCTGCTCTTGAAAGAAAGGTCATCGATCTTCCCAGTACACTGAAAGTTGAGATCTATCCTGTGGAAATCTTCCTGTGTCTGCACAGTGACATGGACAGCATGGTAACGGCCCAGTTCAGCCGAGCAGACACCATACtcAGCATTCAGAAGGTTATACAGAGGGAGTTTGAGGTAGCGGAGGACGCTGAACCACGGCTGTGGATGAAAAGCTCTGATAACAACTGCGAGAGGCTACGAAACCTCCACATGACTGTGCTGGATGCTTGTCTGAACACGGGCAtgACAGTGATCATGGAGATGAGGAATGCAGATGGCACATGGCCCAGCTCCAGACCTCAGATCATGAGGAACTCTATGGAGGAGCAGGACATGTACCGAGGGCAGCCTGGAGTGTGTGGTCTCACTAACTTGGGCAACACCTGCTTCATGAACTCTGCTCTACAGTGTCTGAGCAACACACCCCCGCTGACGGAGTACTTCCTGAGAAACCTGTACCTAGACGAGCTGAACTTCACTAACCCTCTGGGCATGAAGGGTGAGATCGCAGAGGCCTACGCCGACGTCATCAAGCAGATGTGGTCGGGGAGACACTATTCTGTAGTGCCACGTGTTTTTAAAaccaAGGTGGGCCATTTTGCATCCCAGTTCCTGGGTTACCAGCAGCACGACTCCCAGGAGCTTCTGTCCTTCTTGCTGGACGGCCTGCATGAGGACCTGAACCGCGTCAAGAACAAAGAGTACATTGAGCTCAAGGACGCAGACGGCAGACCAGACCAGGAAGTGGCAGATGAGGCATGGTGTAACCACAGGCGACGGAACGACTCTGTGATCGTGGACACGTTTCACGGCCTCTTTAAATCCACACTGGTCTGCCCTGAGTGCAAAAAGGTGtctgtgacctttgaccctttCTGCTACTTGAGTGTTCCCCTGCCAGTCAGCAAGGAGAGGGTCATGGAGGTGTTCTTTGTTTCCCTCGACCCGCTGGCCAAACCTGTGCAGTACAGAGTGGTTGTGCCCAAAGCTGGCCGAGTGATGGACATATGCACTGCTCTGTCTCAAGCCACCGCTATCTCAGCAGAAAAGATGGTAGTGGCAGATGTATTCAACCATCGCTTCTACAAGATTTATCACGCTGATGAGTCTCTCAGCCTTATACTGGACAGAGATGACATCTTTGTgtaCGAGCTGAACAGCAGCGGCACTGTGGAtcaggatgaggaggaggtgCTGCTGGCTGTGTACATGCGGGAACGCTCCAACTACAGAGACTACAGCTCAGGGGGAAACAACTACAGCACGTCACTGTTCGGCCACCCGCTGCTAATGGCTGTGCCTCGTGCACAGTGCACCAGAGACGCCCTTTACCAGCTCTTTCTCCAGCGCCTCATACGATATGTGCATCAGCCAGACTCGACagaggaagtggaggaggaagaggaagaggaaaacgGTAGCGAAGAGAATGACGAAGAAGATGAGATATACAAAAATCAGACCAATGGACTGAGTGGTGATGAGGCTGAGGAACAGTCTGAGGAGGCAGGGCCATCCAAGACAGGAGAGCCTCCTCAGCAGAACAGCACCCAGTCAGAAGCGAGCCCCAGCAGCGAAGGAGAGGAGAAAGTGGAGGATGAGGAGTCGAACAGCGAAGCCGACAGGGGCAGCAGCACAGAGGAGGGCCAATCAGCATGCGGCAGCACGGACAACAACTCCCAAGATGCAGGAGACGGGGAACAGGCTGCTGCAGCAGAAACTTCTGGGAAAGAGGATGAGGATGGAGAAGAGGATGACGGAGAGTGTGGTGAGCCCGTTGCTCAGGCGAAGAAGACGAGTAGACGGTGTTGtgctgagaaaagaaagaagccGCTCTTCACTATACAGGCTGTGAACTCCAACGGCACCACAGATCGAGGCATTGGGGATGGAAACAGCACACTTTCCTTCAACAATCAGCTGTATGTGGCCATTGACTGGGACCCtgacatgaaaaagaaatattacgATGACACCGAGGCAGAGAAATATGTCAAGGATAAGAGCATGGACATCCCACAGCAGCAGACCACAGTGCATCTGCAGGAGTGTATCGAACTCTTCACCACTGTGGAGACACTCGAGGAAGAAAATCCCTGGTACTGTCCAACGTGTAAGAAGCACCAGCTCGCCACTAAGAAGCTGGATCTGTGGTCTCTTCCTGAGGTTCTCATCATCCACCTGAAACGCTTCTCCTACACCAAGTACTCCCGTGAGAAGCTGGACACCATCGTCGACTTCCCTCTCCGAAAGCTGGACTTCTCCGACTGCCTCTTGAGGAAGACAGGGAGAGACTCAGAGCCTCCCAGCAGATACGACCTCATCGGCGTGTCTAACCACTACGGCGGGCTCAGAGACGGACATTATACCAGCTACGCTCGGAACAAGGACAACGGCCAGTGGTATTATTTTGACGACAGTAAGGTGACCTACGCAAAAGAAGAACAAATTGTGACCAACGCTGCCTACCTTCTGTTCTACCAGCGCCAAGACAAGATCCGGCACCCCACCCTCGCCCCGCCTGACAATCACGTCGCTTCCACCAATCACGACGGACCGGGCGGGGCCATGGAGATAGACTGACACagctctgtttatttgtttgtttatttgttttcctcctttctttctttcttgcattCCATCCTTCCAACTCCCTCAATATATCTCCgttctctcctcctctcaggTTAATGAGGGAAtgtttttaattccttttttttttttttttttttttgtgcaaagaaaaaaaaacttgaatctTCTGCCTTTTCATTACCCAGGACAGGAAGTGAGAGGCAGAGGCTAGTGTCTCAGGCTGGTGCAGAGGCATCATGGGTAAAGGCTGTAGTTATTCCTTCACGAGAAGCTGCAGGAACAAGTTCGTCTAGTCGAGGCAATTTCAGATATGTGCTTCAGTTTGATGCTGGCTTGAGAATCTGCGTTGCTCTGGAGTGCAGCCAAGCGTTTGTGAACTTTGCGTCACTTGCTGCTTCTTCTGAATTTCAGAGCGCGATAcgctgctttttttcccctcatgcaTGATTTACACCTTTTGTTCATAAATATGTAGAGCTGTCACAGGTAAAAGAGCTGCACTCTCACTTTATACCTTTTAGCACACAATATTTAGACACATAGATGTCCTCGTTTTACCTGATTGTACTAAAACTtcaattttcattacattaaaGGAGTACTCCAGACTTTTCAACCTAAACTCTTAAATTTATCACATTTGAAGTGTATGAACGATTATTAAGAAACAATCATTGCAACACCTCTCGCTGTACTAGCTGTAAACTGGTTTACCTCAACCTGACTTATAAccgaagtctaagggcagttgttgaactGTAAAATACGAGACGATAGAAACCGCGGCGGTTAGACTCTAAGAATAAAGGATTTAAAACGAGACGCATGACTGAACGTCTTATCGAAGCTGTTCTTGTGGAGATTTATCCACCTTTAAACACTGGAGCAATATAGTAAAAAGCTGCTCGGATGGTTTACACTTTCCGGAAGGTTTTGCAATCTCTGTGCACCATTAGGTGGAAACTGAGGCACTGCAACCTTTTTACTAACAACACTTTTATTTTACCGACACCTTTGACAAAGTAATCCATAAAAGCGCTTTACAGAAACAGTGTTTCTCATAAATGTTTCTTGATGCcacaacaactgcccttagacttccattacaaGTGAGTTTTGGGTCAATATGTCATAAACAAGGGAACATTTTGAAATTGTTTGTAGTAATCACACATGCGTTACAGATGCAGTGAGTagaaattagtttttaaaaaaaaaaaaaaaaaaaaaactctggagTATCTatttaatctgtgtttagtgtaTTAGGTTTCAGCATTTAGTGGCTTTTGATTCCTTTCCAGCTAAATGCTACTGGAGTACTGGAGCCAGACGTTTTAAAGATACCAGCATCACCTTAGATTCTTCTCCAAAGCTATGCTTCAGACTAGGATGAAAAGACATGTCTAGTTGTACCCtctttttacaaattaatcATTTAACTACACACTCTTTGGACCTAAGGGTTTATCTATAAAGCTAAAACGAATGCCTAGCTTCAGACACATATCAAGCCTCGTTTTAAACTGAGTGACACTGTAAATCTTTTCAAGGTGTAAATTGGGTTTAGCAGGAAATAGGATTTATTTATGACATCCTTTAAATTCTGTGCAACCAAAATGACCCTGAGACatctttttaaaagcttttggCTTCAGACTGTGTATCTGTAACCTCAGTGCTTTTGCTTTGGCATGGTTTTGATTTTGCAGATGGAGACTGAGTACATCACACAGGTTATCATGCTAGCATGGCTAATAACAATGAACAAAAGCTACTAGACAAGTGCCACTTAGCCCTCCATTACTAATATTTTATGAGCTGTAGCTAAAGTTAAAACACATTAGGCCTACGTTTAATTTGACTTATAGTGTCAGGCCAAATGTTTTGAGGGAAAACATCAAATGCTGGGCTTAATTTGTGTCTGCAGAAAAGCTGGCACTCAGTTCATACTGAATATGTAATTACTCTTAATTCCTGTCCACCAAAAATGACTTTGTCCTCAATTTAGAGAGGCTTTATAACGATTTTAGCTACAGACTGTGTCTCTGTAACCTCCGTGCTTTTTCTCTGGGTTGATTTCGCAGACACAGGCGATCGAAAGCGCTTCACACATTCATGCTAACATGGCAGTGAACAGGCGTTACTGTGGAACTGTGTAGCATGCTAATTAGGGTTCATTCGCTAATGTTGGAGTTAAAAGGCTGTAGATTTCCATTAAATCTGCCCTTCCCTGATTTATACGTAATTTAGGGccagtttgtgtgttttaaaatttcggctctgtgtttgtctttgcttatgtgcactatatagggtaTAGGGAAGAATGATGCAGCctttgcagtgtgttttaagTAGAGCGCCATCTGAGATtaattttcagtttaaaaaaaaaaaaaaaagagggaccAAAAAGACCAGACAGACTGATGGATCATCAGAACTGTGGATCTTGGGTCAGTTTTTccaggaaacttttttttattttttaatttcaaccAAAAAGCTACCTTtgctaataatgaataaaacgtAGCGTTCAGTCAGCGTTGCGCGTGACATCACGGCTGTGTTGTCGTTTTATTCACCGTTAGCCACGTTAGCATTTTCACCCGAACGTTTCTTTTTCTCTCGGTGATATCAGGGATATATGTCAGAAACTGTTGCAATAAAAGTTCTGTGAAAATTCGTAAAGTATTTTTTAGGCGAATGTAAGAAAACAACTTTGCATAGTCTCACTCGtgatctatttatttttcttaactGCCGAGTGACTGATTCACGTCATCGAAGCTTCGATCTTCcataactgtgttttttttcctcctgttctCGTTATCTTTGATCGTTTTGGAAAAGACGCTCTGTTGCAGGACACAAACAGAGAAGAGATCTATTTTTCAGCAAGACGTTGTATTTTAAGCACAGACAGATTTAAcaggatataaatattattgaCTTTTCATCATTTGTGTGCAATTTCTATTGAACTCCTTGGAGCGATGAGAATGttgtttggttgtgttttttttgtaaaagtgcTTTCTGGATAGAGCtcttaatgatttttaaaatgcatctgTACAGTATTTTTGTATTGTAATAAATATCTTTGATTATTGCAGATTGAATGCAGGGACAGGGTGagcttttattttactttaagagatggaatatataattgtatactTCAATTTTGATATGAATAAATGAGAACTGTATATTAGtgaaattttatatttgtgcACTGTACGAATTTGACTTTCATCACCTCATGTACTTGTGACGTATAATCAGGGGTTTTTATAAAGAAGCTACATTACAGCAAAACCTTCAGCATGTCCCTTAACTACACACTGTTAAGATTTTTGGATTTCAAAATTACTTGTTGAAATTTTTGAATCTGCTTCTACAGCGAACGTATTTGTACTTTAATCAACATCACTGCATTTTTCACATCACTCTGTCTTTCGTATTTACATGTTGAATGAATACGTCaagccatgattttttttaaaaatgatttcctGGTCCTggacattgtacattttatccgtttatagttacatttaatgttgtggaatgtctgcgaTACAACACaggataaacagtcgttcccattactttctcttgaagttaataagaaaaataaatgcagctcgTTTTCAGAGAAACTACAAAATGCAGCATTACAAAGTTCcagttttacctctgagtgttacaaagcgcttggcactggagactccttccaaaaatgttaaataaacatctccttgctgaaaacttca

Function

GO: NA

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150279 lncRNA upstream 93832 4841426 ~ 4842134 (+) True G127147
TU150236 lncRNA upstream 140710 4772794 ~ 4795256 (+) True G127105
TU150205 lncRNA upstream 263092 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA upstream 263092 4662979 ~ 4672874 (+) False plxnb3
XR_003403565.2 lncRNA upstream 441962 4486271 ~ 4494004 (+) True LOC113535080
XR_004578588.1 lncRNA downstream 90115 5051231 ~ 5053827 (+) True LOC117597829
TU150340 lncRNA downstream 94517 5055633 ~ 5055834 (+) True G127198
TU150355 lncRNA downstream 236810 5197926 ~ 5202226 (+) True G127210
TU150450 lncRNA downstream 616661 5577777 ~ 5594115 (+) True G127293
TU150944 lncRNA downstream 946129 5907245 ~ 5907946 (+) False tbc1d22b
XM_026928341.2 mRNA upstream 11202 4859207 ~ 4924764 (+) True grm6a
XM_026927996.2 mRNA upstream 94914 4833118 ~ 4841052 (+) True comta
XM_026927997.2 mRNA upstream 108072 4818221 ~ 4827894 (+) False comta
XM_026927924.2 mRNA downstream 7110 4968226 ~ 4972284 (+) False uxt
XM_026927923.2 mRNA downstream 7686 4968802 ~ 4972284 (+) True uxt
XM_026927925.2 mRNA downstream 7997 4969113 ~ 4972284 (+) False uxt
XM_034306665.1 mRNA downstream 14812 4975928 ~ 5001520 (+) True elk1
XM_026927951.2 mRNA downstream 14812 4975928 ~ 5001520 (+) False elk1
XR_004578621.1 other upstream 172975 4743239 ~ 4762991 (+) False srpk3
TU149628 other upstream 657889 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 834277 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2703826 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 3004548 1877041 ~ 1931418 (+) False LOC113535242
XR_004578572.1 other downstream 1795647 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 1795647 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2462907 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2462907 7424023 ~ 7430997 (+) True mrps36
TU152202 other downstream 3007119 7968235 ~ 7971749 (+) True LOC113526371

Expression Profile