RNA id: XM_026927980.2


Basic Information

Item Value
RNA id XM_026927980.2
length 2917
RNA type mRNA
GC content 0.48
exon number 10
gene id si:dkey-6n6.1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1775656 ~ 1784092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcacaaacacacacacacacagctcagcaCTTAAGTAAATctgacatacatacacacatcatgTACTTGCGTTTAGTctacacgtgtgtgtgtctgtctgtgtgcgtgAGTGTCACATACGGCCTACGAGCGAGCCGGAGGGATGAGAGACAGAAGAGCCGCGCTGTGGCAGCAACAGCTGGATTTAACACACCTGTACATCCAGcgcCTAGTGCTCAGTGCCTGGTGAACGGGATCTTCCTCTTTGAGGGAGCTGTTTGGTCTCCAGATGCGTGTAACATGTGCCAGTGTAGAAACGGTGCAGTTCAGTGCCATGGAGTGCCCTGCCTGGAtatagCTTTACCTGCCTCGAGGCTTCAGGATGGCCACCAGAAACCAGCCCGTGGAGTGAAGCTGGTGAAAATGAGTGGACAGAAGAAAGTCTATCCACAGACTGGAAAGAAGAAAGCGTCACAGGGAAAGGTCATCGTGGAGGTCAAGCCGGAGACAGCACGAAAAAGACCagttaaagctCCTCCACCTGCACAGAAGAAGCatgcaccaccaccaccaccaccaccaccacgaCCGAAGATGAAACAGCAAGCACCTGAAGTAGGAATTGGGAATTTTCCAGTGGCCGCTCGTCAGGACACGTTCCCAGATCTATTTGACTACGATGACCACGACGATGACGACTATCTGGAAGACGATAGTGATGCTGACGAGGATGACGATGATGTCCCAGTCTTACGTAACAGCCGCACCAAAAGTTCATCAGTCAGCAGAAATGCTGCGTCTCTCGCCCGGAAGCCGGCGATATCTGTATTGCAAaggcccctccctcctcccacAAAGCAACCCAGAGTTTTAGCACCTAGTGGAGGTGTTAGAGCTGGAGGGGGTGTGGTTAGAGGCAGAGGGGGCGGGGCCAATGTTGTGGGTCGTCCTGTTATCCGTCCTTCCACTTATATGGCGTCCCTCCCGGCAGGATGTCTGCTGTCTGACGCTCTGATCGCATGCGGCAGCACCGGATTAACCAGCCTGCCTCTCATCAAAGATGCCGGCATCCGAACCCTTTACCTGGCAGaTAATAAGATCAGTAAGATCCCCATGAGAGCGCTGCATGGACTGCCCAATCTACAGTGGCTCGACTTGAGCAAGAACAAACTGGATGACACCTCACTGGGGCTGGATGTGTTCcggaatcTGACCAAACTGCGTCGTCTGAATCTGGACGGGAACAATCTGACCAAAATCCCCCCGCTGCCGCCTTCACTGCTGGAGCTGAAGATCAACGACAACAAACTGAGCGGACTCACACCTCacagctttaaagGTCTGTCCCAGCTGCTCACTCTGGAGCTGGAGGACAATCATTTCCATGATGGGAACGTCTCCCCTCTGGCGTTCAGGCACCTCAAGAAACTCATTTACCTCAGACTGGATGATAACGACTTCAGAGCCATTCCCTCCGGCCTGCCTGCATCACTAAAGgagCTGCATCTGTCAGATAACCGGATTGAAGTGGTTCACGCTGGACTCCTCAATAAGACAGTGAACCTGCGAATCCTAAATCTGAGCCATAATAAAATCCGAGAGGACCGAATCGCACCGAGAGCGTGGATACACTTACGTAAGTTGGAGACGTTGGATCTGTCCCATAATAAACTGGTCCACGTCCCGTCCTTCCTGCCGGTCGGTCTCGTCCAGCTCACGCTGCACCACAATCAGATCGAGAGGATCCCGGGATACGTGTTCGCTCACATGCAGCCCGGCCTCGTCTCCATCCACCTGTCATACAACCGCCTGAGGGAGGACGGCATCAACGAGGTGTCCTTCCTCGGCCTCCAGCACTCCCTGAACGAGCTGCTGCTGGACCACAACCAGCTTCGAGAGATTCCACGAGGGATAGTCCAACTCCGCGCCCTCCACGTCCTCCGCCTCAACCACAACTACATCAGttcGGTACCCGTGAATGCTCTGTGTGACATCACCGCCCGTGACGACTCCCCTCTGCTCTCCGTTCACCTGCAGAATAACCTGATTGATCGGCGTTTAGTCCCGCCCACTGCACTCACCTGTATTAAAGAGTACAGCAGCGTGATCCTGCATCCTCAGAGACACGAACAGGTCTAcgagtgaacacacactcacattcggTTCTTATCCAAAATATATTCACATACGGAACCGAGGAACAGGTGACAACAGGGCCTAGGGGGCGGGGTCATTtcatcaccatgacaacaatTCAGACATCTCAAGTTATTTACATGACAATAGTAATgcaatctttattttttaagtatgtTTCATGGTGAGTACAAAATCGCAGCGTGCTTATGCTTATGATCAAGACTGAGaaagctcatttttattttactaaccTGTTTAAAGTGTACACAAGATTTTAGCTGGATTCCAGTTTTCACTTAAAAATGTATCAAGCTATACCAGTGAGACAGAAGACGAGTAAACGTGTTAATCTGATTATAACAAaaagcttatttttttaaaaaaaaacacatttcactgagAATAATTTTgtgataacacacacaacagactttCACAGATCAGTGTAAcaaatattgttattttatagaatcacttttaaaaacatgtgtatGACAAGTGCATATTTTTGCATAgcttaatgaataaaattttaagtcaaaattactaaaaaaaaacgtTAAGTCAAAACTAGTATgatgtgagtgatgtgtgtgagatgacTCATGTAAAGTCTGAGAAAAATGGcgaaaataatttttaaagaatgttaTTTCAACACAATCCATGGGTAATGACTATTCCTTAGGGTCATctaaagtttttattatttagtttatttacatatttaaagttattagaaattaaataaggCTGCTTTAAAAGTCACAGgctgtcagaaaaaaattttttgcacAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147909 lncRNA upstream 12331 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA upstream 12331 1762304 ~ 1763325 (+) True G125129
TU147893 lncRNA upstream 79395 1686319 ~ 1696261 (+) True G125119
TU147886 lncRNA upstream 152651 1621257 ~ 1623005 (+) True G125117
TU147885 lncRNA upstream 156786 1617620 ~ 1618870 (+) True G125116
TU147928 lncRNA downstream 27262 1811354 ~ 1813285 (+) True G125144
TU148000 lncRNA downstream 176512 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA downstream 182574 1966666 ~ 1987569 (+) False LOC113535242
TU148033 lncRNA downstream 275225 2059317 ~ 2256786 (+) True G125239
TU148075 lncRNA downstream 385469 2169561 ~ 2171015 (+) True G125276
XM_026928020.2 mRNA upstream 10614 1759988 ~ 1765042 (+) True rhoaa
XM_026928023.2 mRNA upstream 16320 1755525 ~ 1759336 (+) True ndufb11
XM_034306302.1 mRNA upstream 22375 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA upstream 22375 1726859 ~ 1753281 (+) False def6a
XM_034306844.1 mRNA upstream 49295 1700988 ~ 1726361 (+) True sin3b
XM_026928618.2 mRNA downstream 5538 1789630 ~ 1802673 (+) False bgna
XM_026928616.2 mRNA downstream 5540 1789632 ~ 1802673 (+) True bgna
XM_026928619.2 mRNA downstream 19383 1803475 ~ 1806641 (+) False si:ch211-229n2.7
XM_034306587.1 mRNA downstream 24922 1809014 ~ 1811333 (+) True dedd
XM_026927931.2 mRNA downstream 36099 1820191 ~ 1851550 (+) True atp2b3a
TU147818 other upstream 429071 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 669369 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 958999 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 19405 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 92949 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 432010 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2311177 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2436592 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile