RNA id: XM_026928012.2


Basic Information

Item Value
RNA id XM_026928012.2
length 2462
RNA type mRNA
GC content 0.44
exon number 5
gene id slc35a2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 5110518 ~ 5130870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGAAAGACGTTCCTGTAGACGTCGACGCTTTCGTCTGAAGCGCCAGTGGGCTACTTTACTTTACGTCTTAggtcgtgtgtgtatgtgtatgcgtgtTTTTTTGGGAAATGTCACGGAGTATTTAGCATTTGGAGAACTTTTCATTATGAAATGAAACTGTCGGGATTAATTTAGTTAGCTTGTGGCTAACGGTTAGCCTGGAGAAAGCCCCATTAGGCGCTGTTAGCTGGTAGCTGGTAgctgtgtcagtgtcagtccGGGGATTTAGACGTCAGTGCCAACATGGCAGCAGGTAACAAGGGTCCAGACTCGGCAGGTGAAGACAAGACGCCTTCCCGCAGACAGACTGACGTTAACAGGAAGTTGAAGTACATCAGTTTGACCGTTTTAGTGATCCAGAATGCCTCGCTCATCCTCAGCATCCGTTACGTGCGGACGTTGCCAGGAGACCGCTTCTTCGCCACGTCCGCCGTGGTCATGGCAGAGGTCCTGAAGGTCTTCACCtgcctcatcatcatcctgttCCAGAAGAGAGGAAATATCAGGGACTTTGTGGCCTTGCTGTATGACTCTATCGTGGTGCAGTATTGGGACACGCTGAAGCTGGCGGTTCCGTCACTTATCTACACACTACAGAACAACCTGCAGTATGTGGCCATCTCTAATTTACCAGCCGCTACGTTCCAGgTAACATATCAGCTGAAGATTTTAACGACAGCGCTCTTCTCTGTGCTCATGCTGAGGAAGAGTCTGTCGCGCGTCCAGTGGATCTCTCTGCTCCTCTTGTTCACCGGTGTGGCCATCGTCCAGGTGGAGCAAGACGGCAGCAAGAAGAAGGAGACCATCGTCTCGGCCGCCTCTCAGAGCTATGTGAAAGGCCTGCTGGCTGTGGTGGTGTCGTGTCTGTCGTCGGGCTTCGCAGGTGTTTACTTTGAGAAGATCTTGAAGGGCAGCAGCGCCTCACTGTGGCTCCGCAACGTGCAGCTGGGGCTCTTCGGGACGCTCCTGGGCCTGCTCGGCCTGTGGTGGAACGACGGCGCGCAGATCGCCGAGAACGGCTTCCTGTTCGGCTACACGCCCATGGTATGGGGCGTGATTTTTAACCAGGCGTTCGGCGGCCTGCTGGTGGCCGTGGTGGTCAAATACGCCGATAACATCCTCAAGGGCTTCGCCACCTCCTTCTCCATCGTGGTGTCCACGGTCACGTCTGTCTACCTCTTCGGCTTCCACGTGGACATTCTGTTCACGCTCGGCGCTGGCCTCGTCATCGGCGCCGTCTACATGTACAGTCTACCCAAACCTGCGGCTCCGCCCTCCGGCGCCGGCTCCTtcccttcctcttcctcctcctcttcctcgcAGACGGACGGGTTCCTTCCAAAGAGCCtagaaaaggagaaaggaagCTAAAACATGGAGAAAGAAGAGGATGGGAACCTGATGAACCTGATGAGTCTTAGGGTGCTACTTCAGATaatatttcttacattttttttaatataactaAGTTAGTTCTTCCTGGAACACTACAGAATGTACTGGATGATTGTTCTCtaacatttaatgtatttttgctattttaaaatTCCACTGTGccgtttatatatatatatgcaggcagtgacttgcataagtattcaccccccttttCCAGTTTGATTATGTATcacaaatctacacaaaatattgtgtattgtaacACTACAGactgtggaaaagttcaagagaaaaggtgtgaatacttatgcaaggcattgTACACTTTTATTGGAGatatctctattttttttttttagatgttagAAGATACAACCcagaaattcataaaaaaaaaaaaagtttcattatGTCTGAATTCTGCCCCGAGGGGGAAAAACAAAATTgctgccttttctttttaacatttcattttctctcatgCTCGTTTCTGTCTAAAGAAaaatttgtgtaattaaaaaaaatattaatttttaatgttgtaatgacGTCTATGTAAAAagcagaggtttttttttttcctctctgcttCTACACAGATGTTTCAGCTCCTGATCATGGAAGCTTTAATTCTACtctttttaaatacacttttaatattaatagtgAAGACATAAGACTGTGAAAATAATGTGGAATTAGGTACAGAGTGGGACGAAATGTTTTAAAGTACATGAATACGATCTTTTAGGATTGTTATTAGCAGAGGAAAAGGGAagatatgtattttattttattttttttatggagCTGAATTCATGAGATATGCatcaactttatttatattcatctcGGGAAGCACATTTCAAGCTTTTTACTGTatctttttaatgttgtttgcttttgtttttgtaaccATCATTTAAAGATGTTCTTAATGTTTATAACACTAAGCTGCCTTACatgatgtttaaatatatatagtgttcATTTACATGAAAAGATTAAATGATACACTTCAA

Function

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150340 lncRNA upstream 54684 5055633 ~ 5055834 (+) True G127198
XR_004578588.1 lncRNA upstream 56691 5051231 ~ 5053827 (+) True LOC117597829
TU150287 lncRNA upstream 171132 4885020 ~ 4939386 (+) True G127155
TU150279 lncRNA upstream 268384 4841426 ~ 4842134 (+) True G127147
TU150236 lncRNA upstream 315262 4772794 ~ 4795256 (+) True G127105
TU150355 lncRNA downstream 67056 5197926 ~ 5202226 (+) True G127210
TU150450 lncRNA downstream 446907 5577777 ~ 5594115 (+) True G127293
TU150944 lncRNA downstream 776375 5907245 ~ 5907946 (+) False tbc1d22b
TU151322 lncRNA downstream 1493817 6624687 ~ 6625322 (+) True G128072
XR_004578522.1 lncRNA downstream 1528994 6659864 ~ 6687416 (+) True LOC117597772
XM_026928014.2 mRNA upstream 3496 5102940 ~ 5107022 (+) True pim2
XM_026928274.2 mRNA upstream 9007 5057674 ~ 5101511 (+) True otud5a
XM_026928273.2 mRNA upstream 9007 5057682 ~ 5101511 (+) False otud5a
XM_034306660.1 mRNA upstream 59310 5038457 ~ 5051208 (+) False si:ch211-180f4.1
XM_034306454.1 mRNA downstream 1564 5132434 ~ 5159096 (+) False bcap31
XM_026928516.2 mRNA downstream 1567 5132437 ~ 5159096 (+) False bcap31
XM_026928517.2 mRNA downstream 1569 5132439 ~ 5159096 (+) True bcap31
XM_026928290.2 mRNA downstream 95270 5226140 ~ 5244126 (+) False pnck
XM_026928289.2 mRNA downstream 95896 5226766 ~ 5244126 (+) True pnck
XR_004578621.1 other upstream 347527 4743239 ~ 4762991 (+) False srpk3
TU149628 other upstream 832441 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 1008829 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2878378 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 3179100 1877041 ~ 1931418 (+) False LOC113535242
XR_004578572.1 other downstream 1625893 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 1625893 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2293153 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2293153 7424023 ~ 7430997 (+) True mrps36
TU152202 other downstream 2837365 7968235 ~ 7971749 (+) True LOC113526371

Expression Profile