RNA id: XM_026928020.2


Basic Information

Item Value
RNA id XM_026928020.2
length 1698
RNA type mRNA
GC content 0.46
exon number 5
gene id rhoaa
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1759988 ~ 1765042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTCCCCTGTAGCGGTAGCtctgctctgattggtcaggagggaCCGAACTGTGCTGAGGGGGCGGGGCCTTTGGGTCGCGAACAGGAAAAGAAAGCGGGAGGACATTCGAAAGCAAAACGATGGCTGCGATTCGCAAGAAGCTGGTGATCGTCGGAGACGGAGCGTGTGGAAAGACCTGTCTACTCATCGTTTTTAGTAAGGACCAGTTTCCTGAGGTCTACGTCCCCACAGTGTTTGAGAATTACGTCGCAGATATTGAGGTAGACGGTAAACAGGTGGAGCTGGCACTGTGGGACACGGCAGGACAGGAAGACTACGACAGACTGAGGCCACTCTCCTACCCCGACACTGATGTCATCCTCATGTGCTTCTCCATTGACAGCCCCGACAGTCTGGAGAACATTCCAGAGAAGTGGACACCAGAGGTGAAGCACTTCTGTCCGAATGTTCCCATCATCCTGGTGGGAAACAAAAAGGACCTCCGGAATGACGAACACACACGGCGGGAGCTTGCCAAGATGAAACAGGAACCTGTTAAAGCAGAAGAGGGCAGAGACATGGCCAATCGAATCAACGCCTCCGGTTATCTAGAGTGTTCTGCCAAAACTAAAGATGGCGTGAGGGAAGTGTTTGAAATGGCCACCAGGGCGGCGCTGCAGGCCAAGAAACGTAGCAAGAAGAACGCTTGCGCACTCCTATAAAGGAGGATGAGGGAATAACGAGGGAGTGGGGGAGGGAGGGACAGAAATACAGGCCACAGATAGGGAGAGATGCAGAAGTGAGAGAAGGGTGgattgagagacagaaagagagagagagagaaccctAGGGGTTAGATAAGCACCTGGGGGCAAATCATTTACTAAAGCAGGCCAAAGGACCCAAAGAGAGTGGGGTAACAATGTAAAAGGGATTGAGCCGTTTTCCCCCCGTGATATGCACTGTTCCCATAGCAACGTTCTCGAGTGTGAGCGGTCATGTGCTTCCATCAGCTGTCTAGAACCACGGTGGATGGAATCAtgtggtttatttaattaaggGAACTgctcattttacacacacacacacacacacacacacacacactgtagtggtgtttaatatGATCAGTGCTGtagtctcacacactctgaagTCCACTCAGTGATTTGGAGTTTAATCGCTCCAGATTAAAGCGCATTTAGCAGTAACAATACTAACgcctcacttttttttatacGCTCGATTATGTACTGTAACGTTTTTAAAAGCTGTTTCGGGTCGATTAGAGCTCGGCGCATTAAACTGAAGACGACTCGGACCTGCAGCTCCGGATGTGCACCATCTGTCACTGTTCAGCTGTAATGACGGCGCGTCTCAAagttatataatttttttttcctggtgttgttaggttgttgttttttttctacttccTGTCTGTGCTGTGTGCTTTAACAGCTATGTGACATTCTGCTGGCTTTTTCTGCATCACTTTcatttattcttaaaaaaagaaaaaaacttttaagaaaagttagtttaaaaaaaaaaatcaggattttTTCAGAGTTGTTTAATGCCATGCTATAAAACACAAATGATTTCTGGAGAGATTCTGCATTTtgttgttataaaataaaaaaaaaatcttttgatgCATCAATGATCTTTTGTATACAAAAGCAGATGGAAAATAAACTTTGTGTAACTCTG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147893 lncRNA upstream 63727 1686319 ~ 1696261 (+) True G125119
TU147886 lncRNA upstream 136983 1621257 ~ 1623005 (+) True G125117
TU147885 lncRNA upstream 141118 1617620 ~ 1618870 (+) True G125116
TU147867 lncRNA upstream 167095 1545694 ~ 1592893 (+) False G125098
TU147928 lncRNA downstream 46312 1811354 ~ 1813285 (+) True G125144
TU148000 lncRNA downstream 195562 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA downstream 201624 1966666 ~ 1987569 (+) False LOC113535242
TU148033 lncRNA downstream 294275 2059317 ~ 2256786 (+) True G125239
TU148075 lncRNA downstream 404519 2169561 ~ 2171015 (+) True G125276
XM_026928023.2 mRNA upstream 652 1755525 ~ 1759336 (+) True ndufb11
XM_034306302.1 mRNA upstream 6707 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA upstream 6707 1726859 ~ 1753281 (+) False def6a
XM_034306844.1 mRNA upstream 33627 1700988 ~ 1726361 (+) True sin3b
XM_034306566.1 mRNA upstream 66135 1628078 ~ 1693853 (+) True xpr1a
XM_026927979.2 mRNA downstream 10614 1775656 ~ 1784092 (+) True si:dkey-6n6.1
XM_026927980.2 mRNA downstream 10614 1775656 ~ 1784092 (+) False si:dkey-6n6.1
XM_026928618.2 mRNA downstream 24588 1789630 ~ 1802673 (+) False bgna
XM_026928616.2 mRNA downstream 24590 1789632 ~ 1802673 (+) True bgna
XM_026928619.2 mRNA downstream 38433 1803475 ~ 1806641 (+) False si:ch211-229n2.7
TU147818 other upstream 413403 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 653701 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 943331 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 38455 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 111999 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 451060 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2330227 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2455642 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile