RNA id: XM_026928034.2


Basic Information

Item Value
RNA id XM_026928034.2
length 2357
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC113534995
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3634700 ~ 3658044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacatacagtagtgCTTGGCAAGCACAGATGTCATACATCAAGCCAGATCAGAGTTCATCACCTCCGGAGACTGTACACGTTTGTCACTGACGGTTGATCTGAGCTACGctcctcactctctccatctctattTCTCCCTTTGTGGAGCCTCCTGGCTTTGAAACTGTGACCTGTCCACCTCCCACACAGTGGAAAGTATGTATCATAAAATACTGAACTGAGGGAGCAGACGGAGGGAGGAAACAGTCTGATAAGGAGTGAAGGACcgaaaaacacaacataaatCACAAGAAAAGACTATAAATACTCCTGACCCGGCTTCGTCATGATCGACCCCGCGGCCGAGCTGCCCTTCTTCTACGGCAGCATCAGCCGTTCAGATGCCGAGCAGTACCTGAAGCTGGCAGGGATGGGTGACGGACTCTTCCTGCTGCGTCAGTGTCTGCGCAGCCTGGGCGGATACGTGCTGTCTCTCGTCTGGAACCTGGAGTTTTATCACTACCCGGTGGAGAAGCAGCTGAATGGGACTTACTGCATCGCGGGTGGAAAGGCCCACTGCGGCCCAGCCGAGCTCTGCGAGTACTACAGCAAGGACGCAGATGGCCTGGTGTGTGTGCTCAAGAAGCCGTGCCTCCGCTCCGCAGAAACACCCATCAAGCCCGGCGTCTTCGAAAACCTTAGGGACAACATGCTGCGCGAGTACGTCCGGCAAACCTGGAACCTGGAGGGCGAGGCCATGGAGCAGGCCATTATCAGTCAGGCGCCTCAGTTAGAGAAGCTGATAGCCACCACGGCCCATGAGAAGATGCCCTGGTACCATGGCAGAGTCCCTCGTCAGGAAGGAGAGCGGCGACTCTACACGGGCTCTCAGCCAGACGGCAAGTTCCTagtgagagaaagagatgagtcTGGCACCTTCGCCTTGTCAGTGATGTATGGAAAGACCGTGTACCATTATCAGATCCTTCACGATAAATCAGGCAAATACTCCATGCCGGAAGGCACCAAGTTTGACACCGTGTGGCAGCTGGTTGAGTATCTGAAAATGAAGCCCGACGGTCTGGTCACGTTACTGCGGGAACCCTGCCTGAACCAGAACAGCGCAAACCAGACTCCAGCCGTGCCTGCATCGaggagAGCCAGAACTAATGGCTACACACCGCCCCctgaagtTCCTGGAGCGTGTAAGACTCTGACCTCGGGGCTGATGGACCGTCAGGCTCTGCCGATGGACAGCGATGAGTTCGTCAGCCCGTACGCCGATCCGAAGGAGCTCCAGGACAAGACGCTCTTCATTAAGCGTGATAAGCTGATGGTGGACGAGGTGGAGCTTGGATCGGGAAACTTCGGCTGCGTGAAGAAAGGCGTCTATAAGATGAAGAGcaAACACATCGACGTAGCCATAAAGGTTCTGAAGAGTGAGAACGAGAAGGCGGTGAAGGACGAGATGATGCGTGAGGCCGAGATCATGCACCAGCTGGATAACCCCTACATAGTGCGCATGATCGGCCTGTGCCAGGCGGAGGCTCTGATGCTGGTGATGGAAATGGCACCTGCCGGGCCGCTCAACAAATTCCTCTCCAGCAGGAAAGATCAGGTGTCGGTGGATAACGTGGTGGAGCTGATGCACCAGGTCTCATTGGGGATGAAGTATTTAGAGGAGAAGAACTTCGTGCACAGAGATTTGGCAGCTCGAAATGTGCTGCTGGTCAACCAACATTATGCCAAGATCAGCGACTTCGGCCTCTCCAAAGCGCTCGGCGCAGACGATAACTATTACAAGgCACGCACATTAGGCAAATGGCCTCTAAAATGGTACGCTCCAGAGTGCATCATGTACCACAAGTTCTCCAATAAAGGCGATGTGTGGAGCTTTGGGGTTACCATGTGGGAGGCGTTTTCCTATGGAGGAAAACCTTACAAGAAAATGAAGGGTCCCGAGGTGATCAGCTTCCTCCAGAACGGCAGTCGCATGGACAGTCCAGCTGGCTGCCCAGAGCCCATGTACGAGCTGATGAAAGAATGCTGGACATTCAAGTATGAAGACAGGCCAGGCTTCGTGAAAGTGGAGGAGAAGATGAGGACCTACTATTACTCCATTTCTAAGAAGAATGCCACTGAGGCAAATGGAGAGGCAGAGAAACCGGATAATTAGCAGCTCAGCTCTGaaagtttaatgtttttttttcaccaggaATTAGTAACAGCATGATGTGTTAAATCTTGTGTGTGAAAGAAGGCACAGAAATACAAAATCTACGCAGATTCGTCGCATTAGCCTGTTACAGGACTCGCTGTGCTTCAGAGCTCGAAATGTCCAAGCGAAAGCTTTGTGTTTATGAAATACATGAAGGCG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K07360 ZAP70; tyrosine-protein kinase ZAP-70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149410 lncRNA upstream 3068 3629802 ~ 3631632 (+) True G126408
TU149403 lncRNA upstream 59397 3568989 ~ 3575303 (+) True G126401
TU148609 lncRNA upstream 97411 3476321 ~ 3537289 (+) False acsbg2
TU148607 lncRNA upstream 143560 3476321 ~ 3491140 (+) False acsbg2
TU148610 lncRNA upstream 157647 3455317 ~ 3477053 (+) False acsbg2
TU149418 lncRNA downstream 26849 3684893 ~ 3701699 (+) False mknk2b
XR_004578595.1 lncRNA downstream 61298 3719342 ~ 3735098 (+) False LOC117597831
XR_004578594.1 lncRNA downstream 62150 3720194 ~ 3735098 (+) True LOC117597831
TU149452 lncRNA downstream 92460 3750504 ~ 3777490 (+) False wdr13
TU149472 lncRNA downstream 144500 3802544 ~ 3843737 (+) True G126461
XM_034306598.1 mRNA upstream 157626 3452558 ~ 3477074 (+) True acsbg2
XM_034306435.1 mRNA upstream 235273 3349812 ~ 3399427 (+) False fcho1
XM_034306436.1 mRNA upstream 235273 3360127 ~ 3399427 (+) True fcho1
XM_034306437.1 mRNA upstream 235273 3366129 ~ 3399427 (+) False fcho1
XM_026927948.2 mRNA upstream 286953 3336381 ~ 3347747 (+) False znf692
XM_034306860.1 mRNA downstream 1806 3659850 ~ 3667299 (+) True mob3a
XM_034306859.1 mRNA downstream 1814 3659858 ~ 3671689 (+) False mob3a
XM_026928036.2 mRNA downstream 1814 3659858 ~ 3671689 (+) False mob3a
XM_034306530.1 mRNA downstream 27481 3685525 ~ 3701703 (+) True mknk2b
XM_026928075.2 mRNA downstream 106855 3764899 ~ 3777004 (+) True wdr13
XR_003403572.2 other upstream 1402560 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1703282 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1827910 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2288115 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2528413 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 437225 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 562640 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1085195 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3098719 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3098719 6756763 ~ 6796076 (+) False phf19

Expression Profile