RNA id: XM_034306860.1


Basic Information

Item Value
RNA id XM_034306860.1
length 3568
RNA type mRNA
GC content 0.41
exon number 3
gene id mob3a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3659850 ~ 3671689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGTGTGTACAGTACGGCTGCGTGACGTTGTCATGAGAGGAAGTGGACTTTGTTCAGTGGGTTTACACCGAGGCGCTTGTTGCTCTCTTTAACAAACTCTAAACATATCAAAAGCTTCCTAACAGTCTATGAATAGCGGCTGTGCTAACCAGAACAACACCACAGGAGTTATTGGGGTATCAATAATGTAGCTTTCGGAGTTGATGGACATTTTTTACAGAGCTCTTCGCGGATAAATTAGATTTAACAGCGTCCAAAAGGCGGTAACATCAAAGCGGAAGTAGAAAGTATCCGACGCTGCTCGaaTTTCTCTCTGGAACTGCAAAACAGCTGTCACTGACTTGAGCAACAGCCTTCCCGTTAGcgtttgtttttattcctcacttatcCTCTTTCAATAAACCACAGCGTCCTCACGCCATGTCTCTGGCCCTGAAGCAAGTCTTCAACAAAGACAGAACGTTCCGGCCCAAGCGGAAGTTCGAGCCAGGCACGCAGCGTTTCGAGCTGCACAAGAAGGCGCAGGCTTCCCTGAACGCAGGTCTGGACCTGAAGCTGGCCGTGCAGCTGCCTCACGGCGAGGACCTGAGCGACTGGGTGGCCGTGCACGTGGTGGACTTCTTCAACCGCATCAACCTGATCTACGGCACCATCAGCGAGTCTTGCACCGAGCAGACATGCCCCATCATGTCCGGAGGGCCCAAATACGAGTACCGCTGGCAGGACGAGCACAAGTACAAGAAGCCCACAGCGCTTTCTGCCCCAAAGTACATGAGTCTCTTGATGGAGTGGATTGAGGTACAGATCAACAACGAGCAAATCTTCCCCACCAATGTCGattttctccctaatttagtcttgacCAATGTCCATCCACAAGCCAGCTCTCGTTTATCGTATGACACCTACAAACCCAGAAAAGTGAAGACTATCACGTGCGTCCTTTGAGACACATGAATCCAGCCAtccgcatcttttcaaactgctgctcatgctacgtcGCGGGTTGGTGTAACACATTTGGAAGAAAGCGCTATGCACCCTCATCTGCATACGTGAGCTctcagatgcccatgattggccagtgtcgctgtgattgacaggggagagagtatgccacccctcccaccTAGAGAGCACGGCCAcatttgctctcttggactcttggccgggattcaaactcacaatctccagaTGATAAGGCGAACACTTGTTCTGTTGTGCCTCTCAGGGGCCCCAGAAATTATTTTACCTGGTTCCTTCATAAGTTCTTTCACAGCTTCAACTTCATAAGGATTTTATCTGTGTTTCATAAGCAGCATAAATTGATCTCCGTCTGCTTCGGCTTATTGTTGCTTATTTGGTTGCTTAGTGACCAGTGCTATTTCTAGGCATAAGCTAATACACCAAAGCCAGAGACATATGAGACATATCCTGATACAGGCTTCGTGAGATGATAATGGCATCACATGATattgacacaaataaaatataaactttaatacatttattttgtaatgacaacAACTCACTGCAATGTTAGTACATTGTAAGATATCTAGATCAGGGTTTTAATATAAGATGTCATTTTCCCgtattattaacatgttattttaatcatgatcaatgtcataaatgtattGGCCacgttattaatatggaaagattgtttgGCAGTAAGTTGTGCTTTAAAGATTAGgctaaataacaaatttgtgtCTTCATCACTCCTAAtgctgtctgacatccacctGAGGTACATGAGCACGTCACGCTTACcagtttaattgtacagatcaggAAAAAAGCAGCGATCTAATTTTGTATACTTTCTCATCCCACCAAAATTAATTACGCCACTgccaacacaaaacacaacatgctTCTGAATTCTTTTTTGAGACgcgagtgtgacttacatcaagcgcAGCACACAGGTGTTGATTTTGACCTGCGATTCAGTGCGGAGTCTAGGAAACTGCCATAGAAAGCAGAATCCGTGTTTATACGGCAATTTATAATAACTATCTTCAGAAATGTTCATATTTCTAGAAATGTACAAATTTGACTTTAGAAGTTTATTTCAATTCTGTGAGTTAACTGCTGTCTTGCACAGACAAAATCAGCACATAGATTAAAAGTATTGTACTAAAAactaaagacatttaaaaaaaacctcagattTTAAGGAAATATTGTACAAATGAGAAAGATTTAGATTTGGAATCATTGTTTAAAACATCCAGTGATCCTGTAGCAACATGGGCTGGCTTTTTTCTGACTTCTGACAGATACAGACTTGGTTTTTAAGACCTGCTTTGCATTCAAATTATATGCAAAGATAAAAAGCACAGTGACACCCAGCAGGACTGACTGTAATTGCACACCGAATCAGAAAGATATACTGAAGAAtactatttaattaaaatactacacatttaaaaagaagcaaataaaAGGTTTCTAAGAAAGCAGCAGGGTTGTTCCAGATGACTCAGGCTTTTCCCTGCCTTCGTCTCAGTGTCACCCTAAACCTGGCGTCTTGCTGCTCCTGCACTCATCCAAGCGTCACCTTTCAAATCAGGTGACGCAGTCCAGCTCAGGATATAAATACACCTTTTCAAAACGCTGCCAACATAGAGCTTAATGGCTTAATTAAATCTTCATCAGTTCGCTATTTATAAACCACACAAAGGCACAGCGATACTTAAGAGTGGCCCACATGGCAAAAATAATCATACTGTGATACATGAAGACATCTTCATGATACGTGATATGCAGTATAGGACAGGGCAAAATGATGATATGATATCAGTATTGTGATAGAATAATAACGTTTATAACTCCTTTCTTAATCACTGTAACAGGTATTGactttaaaatctatttttgcaCAGATTACTTCGTTGCTTTcctttcctttgttaaatagttcatttttttttctatattttggaCACAAATCTATGAAATTACAGCAGTCCTGGTGGGTGCTTTGTTAACAAAACCTCAGCAagattatatattgtatatcatAAAGATGTTTTCAAGTAAGAAGAAATGAGACGtcatatttttgccatatcgtCTGGAAGATACCACTTGTAGCTACATGGGGTTGTGTACATTTATTCAAATAACTGGTTACCTGTTTGAGATGCCAGTATTTGAAAACTGTGCCTTAataagagtgcattaatataaacgtattgtttgaattacagctggctgttatgtaaggaataatacaaGACAGACCATGcagttacacaaaaataatccaggcctgggtggtgtgatgcagcacaacGCGACGCGGAGTGCCGTTACCTCCCTGAAATGGGGTGCAcgatctggagtgtgttattccacttataccacaatgatttgccaatgattacaatgtttaatttattaatgaatgacacatcacacattttaactgtttatggttaagattttatgttgtggaaacGTCCGCGAAGACAATTTAGTTCCTTATAGCCATGACAAAtagttattccctcaccagcattctctctctctctctctctctttctctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149410 lncRNA upstream 28218 3629802 ~ 3631632 (+) True G126408
TU149403 lncRNA upstream 84547 3568989 ~ 3575303 (+) True G126401
TU148609 lncRNA upstream 122561 3476321 ~ 3537289 (+) False acsbg2
TU148607 lncRNA upstream 168710 3476321 ~ 3491140 (+) False acsbg2
TU148610 lncRNA upstream 182797 3455317 ~ 3477053 (+) False acsbg2
TU149418 lncRNA downstream 17594 3684893 ~ 3701699 (+) False mknk2b
XR_004578595.1 lncRNA downstream 52043 3719342 ~ 3735098 (+) False LOC117597831
XR_004578594.1 lncRNA downstream 52895 3720194 ~ 3735098 (+) True LOC117597831
TU149452 lncRNA downstream 83205 3750504 ~ 3777490 (+) False wdr13
TU149472 lncRNA downstream 135245 3802544 ~ 3843737 (+) True G126461
XM_026928034.2 mRNA upstream 1806 3634700 ~ 3658044 (+) True LOC113534995
XM_026928033.2 mRNA upstream 1806 3634700 ~ 3658044 (+) False LOC113534995
XM_034306598.1 mRNA upstream 182776 3452558 ~ 3477074 (+) True acsbg2
XM_034306435.1 mRNA upstream 260423 3349812 ~ 3399427 (+) False fcho1
XM_034306436.1 mRNA upstream 260423 3360127 ~ 3399427 (+) True fcho1
XM_034306530.1 mRNA downstream 18226 3685525 ~ 3701703 (+) True mknk2b
XM_026928075.2 mRNA downstream 97600 3764899 ~ 3777004 (+) True wdr13
XM_026928072.2 mRNA downstream 110998 3778297 ~ 3791621 (+) True haus5
XM_026928561.2 mRNA downstream 135357 3802656 ~ 3807484 (+) False dohh
XM_026928560.2 mRNA downstream 135372 3802671 ~ 3807484 (+) False dohh
XR_003403572.2 other upstream 1427710 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1728432 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1853060 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2313265 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2553563 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 427970 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 553385 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1075940 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3089464 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3089464 6756763 ~ 6796076 (+) False phf19

Expression Profile