RNA id: XM_026928197.2


Basic Information

Item Value
RNA id XM_026928197.2
length 3193
RNA type mRNA
GC content 0.48
exon number 11
gene id tfe3a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4450576 ~ 4479625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACACCTCTGATGTTTTACAACTCTCATGAGTCACATCGGTTACATCATCAGCGTGGAACCACTTTTACCCGAGTCAGGAATCGTCGCTGACATCGAGGTGGACGGCATCCTCACGTCTGATTCAGACACCTTTTATCAGCTCAAGAGTCAGCCCATTACAGTCAGTGGCTCAGTTGCCCCCGCTGCTCCTGCTGTGACCCTGAGCACATCCGCCATGTCCTCACGGGTGTTGATGAGGCAGGAGCTGATGAGGCAGCAGGCGCAGGaccaggagaggagagaagccCAGCAGCAGGCGTCCAGCGCTCAGCTTCGGCCCATCGACTCCACTCCCGCCATCTCCGTCTCGTCCTCTCTGCCCAACACTCGGCCCACGACCACACAGGTCCCCGTGGAGGTGCTGAAGGTTCAGACTCACCTGGAAAACCCGACTAAGTATCACATCCAGCAGGCTCAGAGGCAGCAGGTGAAGCAATACCTCTCCCACACCCTCGGCAACAGAGTGGCCAGTCAGACGCTGGCCATGTCACCCTCGCCCCAGTCAGGCTCCGCCCCCGAGCTGGCCCCGGCCGCCAGCAGCACTCCCAGCAGCCCCCTGGCTGTGCTGAGCCTCAGCTCCAACAAAGAGGAGATTGATGGTGTaattgatgacatcatcagcctGGAGTCCAGTTTGAATGATGAGTTCATGACGCTGATCGACACCGGCCTGCAGCTGCCCAACACGCTGCCAGTCTCAGGAAATCTCCTGGATGTGTACAGCAGTGCTGGGATGACCACACCCACCATTACCGTCAGCAACTCCTGTCCCGCAAACCTGCAGAACGTTAAGACGGAGCTGACAGTTGGTGCTTCACAGACATCTCCTGAGCGTCAGTCTTTGAAATTAAGCAGTTATCATGCTGAGGCTAAAGCTCTCATCAAGGAACGGCAGAAAAAAGACAACCACAACCTCATCGAGAGACGGAGGAGATTCAACATCAATGACCGCATTAAGGAACTGGGAGAGCTCGTTCCCAAATCCAGCGACCCTGAGATGCGCTGGAACAAGGGCACCATCCTGAAGGCGTCGGTGGATTACATCCGTAAGCTGCAGAAGGAGCAGCAAAGGGCTAAAGAGATGGAGCAGAGGCAGAAGAAGCTAGAGCACACCAACCGTGCGCTGCTGCTCCGCATACAGGAGTTGGAGATGCAGGCTCGTCTCCACGGCCTCGCTCCCTCTCAGGTTTCAGACTCCATTGTcacccagcagcagcagcagcagcagctcacaTCTGTGCAGTCCAGCGCTGAGCCTGTCTCCAAAACACTCCTCACTCTGGGCGGCCCAACAGTAAACCACACCCACGTCTCTTCTTTACTCTCCCCTCCCCCTTCGGCCTCTCCAGTGGGCGGGGCCATGACTGTCCCGCTGGACCTGGGCACTCTGACCTTCGGTGAGCTGGATGACCACGCCTCCTCCATGTTCAGCCCCGGTCTGATGGCCGGAGAAATGGGCCTGGGCGATATTCTGATGGATGATGGCGGCGCCGACCCCCTGCTGTCCTCCGTCTCGCCCGGAGCATCCAAGACCAGCAGCCGCAGGAGCAGCTTCAGCATGGAGGAGGATTTGTGATGGACGATTGTGTGATTTAACTCTGATTAGTGGGCTCTGTTAGGCAAACTGAGCTAATACAAGGCCTAACGTCTCTATTCCTGCTTGTGCGTGTCGCAAAACTGGCCAATAGTGGGCAGTGTATCCTGAGGTCAGTTGTCATAGTAATCGTagtactgtttaaaaaaaaaaaaaacaaacaaacaaaaaaagatcaaCATGCAGCATGGCTCTTGACTCCTGCGCTGATGAAGAGACGCACTCTACAACTTTTACCTCGGCATTTTAGGGGTACTGGAGTTTACAAAGGATTGTAGGAGCGGAGTTGTTAAGAAGACGACGTATGATGCTAGCAGATGTGCGTAGATTATAAAAGGATTATAAGCAGCTGTTTTAAGATTTTATGACTCTATTGTTCTGCGTTAGAAGCAGGAGTAggcattttatatttctgtgcTCACTGACCAAGCAAACGCATGTATCAtgtacaccttttttttttttcttttaaagcagCACCATGCTCATCCCCCTTCTCCCATCTCTCCTCAATTCTTACAAAGACAACAACACAGTATAGCTCTTCATACAGGATTCTATGATGTGCATAAAACGACTTATGAACAGGGATCGTATTTTCTGGACTATAAGCTGCACTGGATCGTAAGACATGCCCTAGGTAATGATTAAATTTAACACTTATATGGCACGTCATGATGAGTTTTCCAGACACATGTCTGTTTAATAACGATTCATTCAGCATATGAGATCTCTGTGTAAATTAGAGATGGGAGCGTCTGTATAATTGTACAAACATTATCCCAGATCAAAAAACAAACTTGTATCTTTTAATGCAAGAGGACTGCTTTGACCTTTATCATAACAACTTGTTATAGGGATCATGTCCATTCGTGACAGTAGGCTACATGTCCTATAGCCAATATGTCCTACaccaaataatgaaatatactGGTCAATGTTGCCTCTATTTCATTACTTGATGTTCTAAACTCATCCCTTGTTGGTGTGGTTTGGATTGGATTGGTTTTGGGAGAATGCTTCCTAGTATGTCTTCCATAATTAAGaaaaggtgggaaaagaaaaaagaaactttcTCCCATTGATTCATTTGGGATTATTTTCTGGGGTTATTAATAGAGGTCAATAATTTATAGTAGATAAAAATGTACCTCAGAGACCAtgaaaaatgactgacatgacaGATTAGAGTGGGACTAAAATCACAGAGAAAGCAAACATTGTCAGTGTATTAATTTTAATCTCTGATGTGCGGTGTACATAGTAGTAATCTTGCATAGAACGTCGACACTCGATCTGGGGAAGAAGAGCTCGTCTATGCAAAGAGTTTAACCAACACTATAAGACAGAACCTTAGACACTGTCCTGTTGTTTTAATAGGACAGTAAAGACAAggggaaatatatataaaactatatatatatgcataacaaatgaatattgtttattttgtgaaacCTTTTTAATGTAGTTAACTCAGGCTACTCTTCATAGTAAGAAGGCCATGAACTACTCTAAAGCTGCATCCATGATTAAAGTCACGTCTGCCAACTACAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149676 lncRNA upstream 95450 4318210 ~ 4358056 (+) True G126628
TU149636 lncRNA upstream 198744 4253744 ~ 4254762 (+) True G126591
TU149580 lncRNA upstream 268426 4111574 ~ 4185080 (+) True G126549
TU149551 lncRNA upstream 320837 4069691 ~ 4132669 (+) True G126529
TU149545 lncRNA upstream 392440 4060279 ~ 4061066 (+) True G126525
XR_003403565.2 lncRNA downstream 6646 4486271 ~ 4494004 (+) True LOC113535080
TU150205 lncRNA downstream 146508 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA downstream 183354 4662979 ~ 4672874 (+) False plxnb3
TU150236 lncRNA downstream 293169 4772794 ~ 4795256 (+) True G127105
TU150279 lncRNA downstream 361801 4841426 ~ 4842134 (+) True G127147
XM_026928602.2 mRNA upstream 8084 4394348 ~ 4445422 (+) True fgd1
XM_026928603.2 mRNA upstream 9408 4417421 ~ 4444098 (+) False fgd1
XM_026928364.2 mRNA upstream 64556 4376634 ~ 4388950 (+) False LOC113535168
XM_026928362.2 mRNA upstream 64556 4376816 ~ 4388950 (+) True LOC113535168
XM_034306373.1 mRNA upstream 64556 4377996 ~ 4388950 (+) False LOC113535168
XM_026927918.2 mRNA downstream 21160 4500785 ~ 4504839 (+) True ntpcr
XM_026928564.2 mRNA downstream 25788 4505413 ~ 4512377 (+) True cxxc1a
XM_026928565.2 mRNA downstream 26505 4506130 ~ 4512377 (+) False cxxc1a
XM_026928215.2 mRNA downstream 32930 4512555 ~ 4540256 (+) True mbd1a
XM_026928213.2 mRNA downstream 37105 4516730 ~ 4540256 (+) False mbd1a
TU149628 other upstream 175429 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 351817 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2221366 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2522088 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2646716 1803497 ~ 1806790 (+) True si:ch211-229n2.7
XR_004578621.1 other downstream 263614 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2277138 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2277138 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2944398 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2944398 7424023 ~ 7430997 (+) True mrps36

Expression Profile