RNA id: XM_034306696.1


Basic Information

Item Value
RNA id XM_034306696.1
length 8433
RNA type mRNA
GC content 0.43
exon number 17
gene id mbd1a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4512555 ~ 4540256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcGAGCTCGAGACGGATACAGCTTAACGAGCGCGAGACGTCGATATCGGAGAGCGATGCTTTTTCATGCACGCGGGGTTTGAGCAGAGAAAAGAGCAGGGAGAGTTGGGATTGCAAAACGGGGGGCTGAGCTTCACTCCCActccacaacagcagaacagCGATTTCCTGTTCAACTTTGGCTCTGATGCCTCGCTTGGAACAAAACAATGACTTTTCTTGTCActtattttaacataaaaacaaaaaaccgcCCAGCGCGTGACTCGGATTCTTCCCCTGCTTCAGAAATGTTTGCACTGGACGCTTTTGCAAGTCCCGAGGGTCGCCCTAAGCTAGCTGTCTACAAAGTGCACAAGCTATTTCATACCTTCTTTACAATTAACCTctaatgcattttgtttttcttttttttttttttaactctcatCTCAATGTTGCTTCCAGTGTACCAAAGAGATATGCCTCAATTTCAGTGCACAAATCTGAAATATGAAACTTCACAACGTCTGTCTTGTTGACCCACTTTGACTTAGCAAATCGCCTAGCTAGATCTAGCTGTTTACACTCCACACAAcaGTTCAAAATGCAGCCTGCATCTACGTATCTTGCGGTCTGAAGCCGTCACAAGGTGAAAGGATGTGACTCCGTCTGGCATTCCGTCATCCTGCTATGAGCCGAGATCCATCGGCGTGAGAGCGTGAGATTAATGGAAGGTGTGACGGAAGAGTTGAGGGAACAGTTGGAGAAAGGGCAGGATGAGACAGGACCCACTTCAGTGAACGACACGCTTCCGATCGGGAAGGACGATCCGTCCATCCCTACGGTCATGGATCCGGGCGAGGACGAGACGGAGCCGcctcctgattggctggagcCGTTGGAGGACTGTGAAGATGAGGGTGATGAAGGTGTGGAGATTGACAGGAGCAGCAAGCGAAGAAGCAGAAGGGGCAATAATGCTTCGCGGAGACGAGGGAGGCCGTCAGTGTCTTCGAGCAGTACCTGGGTGGATTGTCCTGACCTGGGAAGTGGCTGGAAACGAAAAGTGATCCTTTGGCGTGCAGGCAAAAATGCTACGTATTACATGAGTCCCAAAGGTGTGCGCTTCAGGAGTAAAGTCCAACTTGCCAAACATCTCAAAGCTGACCTGGCTCTCTTTGACTATAAAGAAGGAAAGTTTGTGGATGCTATTATCCCAAGAAAGCGCCGAAAAGCTCGTGTGAAAGAAGGCACCAGGCGCTCCAGTTGTTCTTCCTCCAGAGTTGCTACTCCGGAACTGGACAAGGCTTGCACCTCTGAAAACTTGACCACGCCTCCTCAGAACGGTCCCCTCAGCTCCCAGAGACCCCATCTCATCCCTATACCACCGTCCACCTCTCCACCTCCAAAGAGCTCCTACAGAAGCCCCCCAGAGCTTACTCGCGTCTCCCCCACCATCCTCCAGCAGCCCAGCCCTTCATCCTCGCTCAAACTGGACGATCTCTCAGTTCAAACCAACCCGGTATCTCAGTCCTGGCTCCAGTCCTCTCTGGCCCCTGTTAGCCCCACCAAATCCACTGAGAGTGACTTCCCCACTTACCCAAATGGCCAGAGTGCCGTGAAAGACTCCCCGTATCTCCATCCACCCCCTCCGACTCAGCTGGCTCTGGACCCTGAAGAAGGAATGCAGGATCATGGCCTCCCTCCTCTCGAaggCTGTGCAAACTGTGGTTGTAAATACCCTGGGATGGGGAGTGGGAAGCAGCTGCTGTGTCCCAAATGCAGACcaAGGAGAAATCAGCATCCTCATATTATCTTCAGAAAGGTGGGACAGGATAGGTGGATTCTGGGAAACACCAAAAATGACAATTCCCTTaaaAAGAAGATACCTCCCTTAGGGAAGAGACGCCATCCTTCTAAGTCACTCAGATTGATGGCTcaacaggaaaaggaaaaggaagtgATTAAGAAGGAAGTGCAACAGGACAGTGACGAGGATGACGACGGGCCCGATGCTGGACctgatgatgacgacgatTGTGGTCCACGGAAGCGCAAACGGCGAATGTGTGGTCAGTGTAAAGCCTGCCTTCGTAACGAGAACTGTGGAAAATGCGATTTTTGCTTGGACAAGACCAGATACGGTGGCCCAAACAAGCTGAGGCAGAAATGTCGGTTTCGCCAGTGTCAGGTTCGGTCTCGCCTTCAGACAGGGTCACTTAAATATGCCAGATCTGTTGGTTTGGTGGACTCGGGACAAGGCGAGTCGAGCCCCCGAAAGCACGGCAGACACTGGGGGAGGCGAAAAATGAAGCGTCGCTCAAGAAGCAACAAATACTGTACGGACGACGAAAACGATGATGATGGCAAATGTGAAGGCAGGCGTTCGGTCAGGAAAGGACGAAGGGGCAGGCCGAAGAAATACGGGCGCCGCCTTAAACGAGTGAAGGACGAGGAAGGAGATAAGGTGTCGGATCCAGAGATTGAGGACGGAGGACCAGGTGATCTGGAGCAGGACCCAtttgtggtgtgtgatgatggcaGCAGTGGTTTTTACGAGTCTGAAGAGCTCTACTCAAACAACTACCTTCAGAATGGCACTGACCTTGATATGCTCAGGAGCAGTGGGCATCAGCCAGTGGAGGTGGAATACACTGAGCTTCCTCAGGGCCCACAACTGGTGTACACTGTACCAGGTCTGTCTGATGGTTCTCAGCTGCTGAGCTCAGTCCTGCCTAACGGTGTTCCACTACAGCTGAGTGCTGTGCCAGGCACACACGCGCCCCTGTTGCTGGATCACGTGCCGGGCAAAGCTGCCCCTCAGCAGCACCCTGAGGTCCTGCCGAGTAACGGTGCGTCCCTCCGGCTCAGTGATTTTCTGAGGAATCACGGATTGGAGCTGGTCGAGGTGGATACGACTATGTCACAGATCCTTACAGCTCCTTCCACAGCTCCTCCCATGGCTCCTCCCAGCCACGAACCAGAGCGCCAGGGTGAACCAGGGACTCTGGACACATCGCCTGAGATCTACAGCCTTCCAGACTCTACTGAGAGTGCCTCAATCCGGGACTCGGGGCTGCTGGAGCTGCTGACTTCTCTGCGCCGCACCATTCTCCCTGCGCACTGGGTGGGCGTGATGGCTAATGGCCCGATCCTGCAGCTCTTCCAGTGTTCCAAGCTTTCGCCCATGGCTGACACGGTGCTGCAGATCGAGCCGGACTTCTTCTACCAGATCAGCGTGCAGAACCAGCCGCTGCTGCCCACTCACGCCGTGTACGAACGCCATCCGGCCCGCCTTACATCCGTCAGCCAAGTGGTGACCCTGCTGCTTGACCTGGAGGAGCTGAACGTGTGTCAGGGCTACCAGAGCTTTGAGGCGAACTCGCAGCGAGAGCCGCTGCTGTGTGCGCGTGCCGCGTTGTGCCAGCTGCTCGTCCCGCAGGATGAGGACTGCTGCGATAAATGCCAGGAGTGCAACCCTCTCATAACAAGCTAGTGCGTGAAACTCAGTCAAAGTCTGTGATCAAACGGTTAGAAGGGGAGATCTGAAAGTCTTTTACAATTCACTGGTTTGTTGTTAAGTGTATAAAGTCAATACGATCATCCTACGTTAGAACCTTATTAATGCAGGGGGTTTGTGTTGATGTGTTAACAATGCCAAAACTCCAGGAAGCAAACtattttaaaggaatactccagtgttttccaAACTAATCTCTACACAAAAAATCTGTAGCGTATGTGTGATTCCTACAGACacaatatactataatatacatttccttctaaaaaaaaaaaaagaacaggaaatTAACAACTTTAagactcaataaataaataattaaaggatGAGGCAGACATGAGAGAATGTTAGGATTTTAAGGAGTGTTGTTATCTATGGACAATCAGGTGGaaactgattttatatatatataatattatatgtaatatagttaatatttaatttaaatgtggaaCCACTAATCAGTCCAAAtttggagcatgctgttataggaaaataatcaaagactgGGTGATGTGATGCGTTTCagtgcagagttactgttaccatgccgacggattttattctttttatatcacagcaattcgCCAACAGTTTttagaatgacacatcatattttttattcgtttataaTTACGGTTCATGTTGTAGAACGTCCGTgagacatgttagttcctgttatcgcttacattataacagctataaacaactgtTCGTTCACTAgtctctgtttttattctctcttttgaagtttgTCGTGTTTTAGAGAAACCACAAACCTGAACGTCCTGAACattttcctgtgtcagaaaactaaAGTTACAGATTTTACTTAAGGCTCTTTTAATAAATGCTAAttaggcaaatcacaggtttacattaagcTCAttataatacgttattgtttctatagtttCCTTACAGTAAACTTCGTCATTTCAACAGTTACACACGTTTATTTAATcaatttaagttttttttttatccatttaagtTCCTgtacaagttgttactatagaaacaataacgtattataaTGAGCtgaatgtaaacctgtgatttgccttgcagccggaactactatcagagcttcTGCTTTAGAAAATGAATCGACAGCTTATGACCAATCACGAGTGTTTATTGATGCTTCAGTGACTGCCCCTCATTAGACTTTCATCATAATTGAGTTTCCAGTAAACAGGTGTACTCAGAACATGaaaatgtgttgtatttattgtcctagtaatcacacacacagtacagattGAGTAGACAGAGATTATCTTGAAAAATTCTGGAGCGTGCTTTaaggtttgtgcatgttttgAAAGTTCTCCTGGCGGTGACGGCTCCGGCGGGATAGATGATATTCATCTCAGCATAGTCAAGCTTGCAAGCCTGAGCAAGCAAAGGAATATTCCTGGTGAGATTTGAGATTTCCCATTCAGTTCCCCAGGACACTTCCTGGAtgtttcagagattttttttttcttttttaatttattgattagTACTGTGACTTTGTACAGTGGTGCTCCAAGGGCTTGGTTTGATTTGACGTCTTCTTCAAATAGAAGTTACTCTGGAGCCGCTCCTGTTGTTCTAATGGTGCTTTTTCCCTGTCTACGTAGCTCTCTGTAGCAAAACATGTTTAGCGAGCCTGTGATGCTCATCCATGGCCAACCCTGCATCGTTTAGGCGTCCTTCATCCAGGCGTTCTTCGTCCAGACGGCTGTCTGTTCCTTTGTTCTCGATTTGCTCTCAGACGTGTGGAGAGAGTAAGGGAAGTCATTGACCTTTAACTACCTCTCAGTGATTCCTTGGTCCATCGCTGGTGTCCATAACTGTTAACATAACATAGCATTGCTGTTCTCATCTTTGCTTAGCTTTCACCTATGATGCACGTCaccttgtttttgttgttttatggctTTCCGTATGGAAGGTTATCAAGCTTTGACTTTTAGTTTAGTAATGATATACATCACCTGGTTTAATTCTAGGATGTTTagagtgctgctgtgtttttttttttttttttaaactgttaaatcccagagaaaattttattaaacaaatcacTTTTATGTAGAATGTAATACTTTATGGTATGTATCATCTTCCATTCTACAATGTCATTCTTTAGTATCGCAACACTGTAATGATAGTATTAGCACAgaaaacaagtgtttttttcctcacattgTCATACATTGCTATCTGacatgagctgtgtctcaaatcacatacttgtATACTATTCTAGACAACTTTTGAGTATCCAAAACTGTCTAGAACTGCTCACACagaaaaatatgaacaaatatctTAGAGTTAAAAGACCTGGATGGAATTTTTTCTGAATATATTTTGGAGTGATTGAGGCTCTTTCCCCATCATGCACCACGGAATTAAAGCAGGAGGGCCTTGTAGCAGATGAAGACGTGGCTACTACTGACAGcaggagagattttttttttctccaacgCCACCTCTGTCTCCATCTCAAACCTGCAACTGTTAATGAATCgtccattaaaattaaaaatacacaaagtacAGCATACATGGTTATCTAGCTAATGTCAGGTAGCACTGAATACAAACTACAACTATTGTTTATACCACGTTCATTTAAATCCAATTTCCCTCAAGTACAACACTGTTTGGATTTCATATATGAAcctatttaaaaataagcacTCAATGCTAAACATCTCGCTTAATGTTTAAAGGTTAAGTCAGCGATTTTTTTGGCAGCTTCTTCCTCTGAGattctattttattaatattttattgacagTTGCCAAAATCTGGTTAGAACTTCAGCAAATATTACAGAAAGTGTTCAGATTTAAAAATCGCTGGTTCCACCTTTAAGTATTAGGTCATGGTATGCAATCTGAGGCACAGCTATGATCAAATCACTCAATGAGGGTTCACGTTAAATCAGTTGTATTGTAATGTAACATAAagtacagatgggtgacaaattgaagggaaaaaaaacggtGACTCTGTTAAGCTGTGGAGggcatttatttcttttgctgGAATGATTTGGCTCAACTTGTCTCCTTAGAGTAAATGGTcattgcaaatcaatacaaagttcttctaacacatcacttttatcctatgatgaaacatttctgtccttatgggagtggtctcttccaggatgactccgcccctaTCTACCgggcacaagggctcactgaatggtttaatgaggctgaaaatgatgtaaaacatACACTTCACAATCCTTCACAATCACCAGATTGTAattgggagattttggagcaaggTGTTAGACACTGCTCTTCAtaaacatcatcaaaacatcaactgagggaattgttttttttttttttttttttggaaaagttgTGTTCTTGTTGAATTTATGCTAAACCACattaaagctgttctggtggcttgtggtggcccaacagCTTACTAACCCACTTAATGtttgcttttcctttaatttgtctcCTGTCTGTAAAAGAAATATTTGGTCATTGAGTTCTTCACACTCGGATTCTTCAGATCATGTCTTCTCTATTGCGTCTGCCAAAAAGATTTTGTCTGTGCTACTAAAAAGAGCCCAAAATGATGATCGATGTTAACCAAAAGCTCTACTGAAGCTGGGACAGGAGACTGGTTTCTAGCTAGTGATTAACATGAGTGTTTGCTGATGATGCTATTTTTACACTTGAGTACACCGTGTCCAGCATTGGTTTTGCTCCCCAATGCCACTTTTCCTTGACAGGTACACAAAAGTTCTCTAAGGCTCCTTTCacacttgctgtttttttgcttatatgacagaacacattttacATGCAATATCTTGGAAGGTGGCTGCTTTTTAAAAGCACTGCCAAAGGCATTTTTGTCACAGTGGAGCTTCCAAAGTTCTCAGAGCAGAGtgatgtcaattttttttttttttctttaaatatcagTCTTGTTAGTGAGCAAATATTAGGAAATTTACTACATGCTGAATAGAAATTAATCACTCAGATAATCAGCATAAAAATGCTCCCAGCCTGGTAACAAAACagcaagtgtgaaagcacccttaaGCATCGATACAACACTTGAGGTTGGTGTCTTGCACTACTGAATGAAAACATTACACGTTTGTGTCAATAAGCTGCTCATGCTAAAGGTGAGGTGAAGCATTCTAGTCCCAGAGAATGACAGTACACAGGGCAGTTTTGTGTTTTCCTGCTATTTTAGGACTACAGATATGTCTCAGTAGTGCTGTTGAAAATGTGGCTGAAGGGTGATACCATATAAATGAAGGGACTCATTACAGCCAGAgttacagtttggtgatttccctTTACTAATACACCTGGAAGGTTACAGTAAATCTACAACGATTCAACAAACTCTTCATACTTGCCTAAGGTGGTTTGGATGATTGTTGGTACCCTTATCACTTGTGCATTTATGAATGACAGAGCAAGTcagaaatgtgctttttttttcttttttttttttttttaaagcttttgccCCTCATAAAACACTGAACGGTTGCTTTCTTATGCCGTACTCATGACTGTTTccttgattttattattatgtaaacaaaaatgtgtatatgttAATAGTCATCattcctttaaaatattttgcagaaTTTGGTGTGTccccttttctccttttttgtaTAGTCACTGGCatgacagttaaaaaaaaaaaaaaggtaatacaAAGTTGttgattgaaatatttttattaaaatatttaaagaatctAAAAAGGTTACAGAGCTCCACATTTTATTATGAAGACACTGTAGCCATAGCATAATACTGTGTTGGGGTCCTGCTTTACCGCcagtttttaaaacatgatttctATGAGTGGTTAAAAGATTTATTAAATCCTCTCACttgtttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403565.2 lncRNA upstream 23151 4486271 ~ 4494004 (+) True LOC113535080
TU149676 lncRNA upstream 159099 4318210 ~ 4358056 (+) True G126628
TU149636 lncRNA upstream 262393 4253744 ~ 4254762 (+) True G126591
TU149580 lncRNA upstream 332075 4111574 ~ 4185080 (+) True G126549
TU149551 lncRNA upstream 384486 4069691 ~ 4132669 (+) True G126529
TU150205 lncRNA downstream 85877 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA downstream 122723 4662979 ~ 4672874 (+) False plxnb3
TU150236 lncRNA downstream 232538 4772794 ~ 4795256 (+) True G127105
TU150279 lncRNA downstream 301170 4841426 ~ 4842134 (+) True G127147
TU150287 lncRNA downstream 344764 4885020 ~ 4939386 (+) True G127155
XM_026928564.2 mRNA upstream 4778 4505413 ~ 4512377 (+) True cxxc1a
XM_026928565.2 mRNA upstream 4778 4506130 ~ 4512377 (+) False cxxc1a
XM_026927918.2 mRNA upstream 12316 4500785 ~ 4504839 (+) True ntpcr
XM_026928196.2 mRNA upstream 37530 4450578 ~ 4479625 (+) False tfe3a
XM_026928323.2 mRNA downstream 3284 4543540 ~ 4603365 (+) False si:ch211-169p10.1
XM_026928322.2 mRNA downstream 30767 4571023 ~ 4603365 (+) True si:ch211-169p10.1
XM_026928321.2 mRNA downstream 30768 4571024 ~ 4603365 (+) False si:ch211-169p10.1
XM_034306747.1 mRNA downstream 31947 4572203 ~ 4603365 (+) False si:ch211-169p10.1
XM_026928049.2 mRNA downstream 64560 4604816 ~ 4623910 (+) True abcd1
TU149628 other upstream 239078 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 415466 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2285015 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2585737 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2710365 1803497 ~ 1806790 (+) True si:ch211-229n2.7
XR_004578621.1 other downstream 202983 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2216507 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2216507 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2883767 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2883767 7424023 ~ 7430997 (+) True mrps36

Expression Profile