RNA id: XM_026928230.2


Basic Information

Item Value
RNA id XM_026928230.2
length 1473
RNA type mRNA
GC content 0.42
exon number 5
gene id rab3c
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7483160 ~ 7492065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTCCTGTATGCAATCCCTGCCAGAAAATTGCGAAATTcggagtttaaaaaaacaaaaaacaaaaaacagggtTTTAATATATGAGGTTCAGATTGTGTTTGTAACTACAGAAGCATGTGATTGTCTTTTCTTGTACTGTAAAGGCCTAAACTCAAGCATATTTGGATCGAAACAGTGTTTTCTCTGGACAGACTTAGGATGGCTGCCACTCAAGATGGTAAACAGAAAGATAACTCAGATCAAAACTTTGACTACATGTTCAAACTGTTAATCATCGGGAACAGCAGTGTTGGTAAAACATCATTCCTGTTCCGCTACGCCGATGACTCTTTTACATCAGCTTTCGTCAGCACTGTGGGGATCGACTTCAGGGTCAAAACCGTGTACAGGAACGACAAGAGCATCAAGTTGCAGATCTGGGACACAGCAGGCCAGGAGCGCTACAGGACCATCACTACAGCTTACTATCGTGGAGCCATGGGATTCATCCTCATGTATGATATCACTAATGAGGAGTCCTTCGCTGCTGTGCAAGACTGGTCAACTCAGATTAAGACTTACTCATGGGACAATGCCCAGGTGATCCTAGTTGGAAACAAATGTGACATGGAGGAGGAGAGAATAGTGTCTGTGGACAGTGGAAGACTCCTGGCAGAACAGCTGGGTTTCGAGTTCTTTGAGACAAGTGCGAAGGACAATATTAACGTCAAGCAGACGTTTGAGTGCCTGGTGGACGTTATCTGCGATAAAATGGCTGACAGCCTTGAGAGCAACCCTGCTGAAACCACAGGAACACCCACAACCAAACTGAGCGACAACGCTGTACCGCCCCAGCAGTCTGAGTGCAGCTGCTAGTGATACCtacacaggctgtgtgtgtgtgtgtgtgtgtatatgtgtgtgatttctgtgcTGTTGCCAATCTTtcaaagacaaaaatacatcacCAAACCCCAAGGCCAAACTGTAGGCTGGCTAGAAGCTTTGCAAAATTGTGGGAAAAAATAGGAACCATTTTCCAGTCTTATCTATAACTCTAGACTACAGTTATCAATGCGGAACTCTCAGCTTAGATTACTATTGTTGAAAAAACTCAAGGATATGATGTTGTGCCAAAATATCACAGTGTCAGAGGTCCCCTGTGTGATTACATCACTGTAAAGGCCTTATCTTATGCATTGAGGTTTAGATAATCACAGTAGATCTCCTAAACTGTGCAATATGCTGTTTGTGTCAtttaatatgaagaaaaaaaaaagccatgaaCTGAAATAGCAGCTGTGCTTATTCCCACTCGCCTCAGGGGAATTACTTATGTGTGTATTGCTTTCTTTCTACctaatgtacatatataatTGGTAAGCTTTTGTTATATCCTAACTAACGAGTGTTTTGTTGATTGAAGTCTATTACAATATGTATTGAAAAGCTGCCATTATAGATGAATAAATGTGGCCTTAAAACCTGTAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151945 lncRNA upstream 13564 7466341 ~ 7470181 (+) True G128629
TU151917 lncRNA upstream 107180 7376139 ~ 7376565 (+) True G128612
TU151640 lncRNA upstream 165952 7317544 ~ 7317793 (+) True G128358
TU151608 lncRNA upstream 256955 7225011 ~ 7226790 (+) False LOC117597844
XR_004578608.1 lncRNA upstream 256971 7224874 ~ 7226774 (+) True LOC117597844
TU151955 lncRNA downstream 283 7492348 ~ 7496816 (+) True G128638
TU151959 lncRNA downstream 9492 7501557 ~ 7502007 (+) True G128642
TU151998 lncRNA downstream 58502 7550567 ~ 7552283 (+) True G128678
TU152002 lncRNA downstream 71980 7564045 ~ 7564343 (+) True G128682
TU152023 lncRNA downstream 125480 7617545 ~ 7689228 (+) True G128703
XM_026928192.2 mRNA upstream 56161 7424001 ~ 7427584 (+) False mrps36
XM_026928193.2 mRNA upstream 56161 7424003 ~ 7427584 (+) False mrps36
XM_026928183.2 mRNA upstream 63369 7414349 ~ 7420376 (+) True pola2
XM_026928182.2 mRNA upstream 72850 7395565 ~ 7410895 (+) True kif2a
XM_026928361.2 mRNA downstream 192930 7684995 ~ 7687338 (+) True ndufaf2
XM_026928502.2 mRNA downstream 202668 7694733 ~ 7696569 (+) True LOC113535261
XM_026916283.2 mRNA downstream 364446 7856511 ~ 7861570 (+) False smim1
XM_026916265.2 mRNA downstream 365638 7857703 ~ 7861570 (+) False smim1
XM_026916274.2 mRNA downstream 366010 7858075 ~ 7861570 (+) False smim1
TU151932 other upstream 52748 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 56188 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 678435 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 687669 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 2720754 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 476170 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 815099 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2865881 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 3064453 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 3378069 10870134 ~ 10874017 (+) False mrpl55

Expression Profile