RNA id: XM_026928255.2


Basic Information

Item Value
RNA id XM_026928255.2
length 2025
RNA type mRNA
GC content 0.50
exon number 8
gene id slc35a3a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3036229 ~ 3055064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AggaagtcacacacacacacacacacacacactctctctctctctcacacacacacacacacacacacacagagaggctGCAGTTTTTAAACCCAGCTCTCAGCTTTACTTTCATCCAGGAAGCGTTTCTTTAAAGCGGCATCAAATCAGGACGCGAGCAGAAAGAGGAAGATGGAGGAGTTTAGTGCAGGAAGTGAGattagcattagcgttagcgTTAGCATGTGTCTGAGCACCACAACAACCTGGAGCAGAGGGACAGAGAGTCACACTGCAGCTTAACACACTTACTCAacctcctctttctttctttctttcattcattcattattgttGTTTAGCCTCCATTCAGCGCAGGACAAACCTGGCATCTGTTCCTCTTTTCTCCTCAATCATTCACTTCCGGATTAGCTGAAGAAGTCTTGCCTCGGCTGTGGCTCGCCCCTGAGGGATCGCTAGGCCATGACGTCGGTACGGCTGAAGTACCTCTCTCTGGGTGTGCTGGTGTTCCAGACGACCTCTCTGGTGCTGACCATGCGATACTCGCGCACTCTGCAGGCTGATGGGCCACGTTACCTCGCTTCCTCCGCCGTGGTGCTGGCTGAGCTGCTCAAGATCCTCACCTGCGTCTGCCTCGTCTGCAAAGAGCACAGTTACAGTGTCCGTGCTCTGAGCACCGTCCTCAGGCAGGAGATCCTCCATAAGCCAGTGGAGACGCTGAAGCTGGCCATTCCCTCAGGAATCTACACGCTGCAGAACAACCTGCTGTACGTGGCACTTTCCAACCTCGACGCTGCTACATACCAGGTGACCTACCAGCTGAAGATCCTCACCACTGCGCTGTTTTCTGTCTCCATGTTGGGTCGCAGGCTTGGTCTCTATCAATGGCTCTCGCTCATCATTTTGATGACTGGAGTAGCTCTTGTGCAGtggCCCACGGACTCTTCCTCCGAGAAGCAGCAGCCCACAACGGGGTCTCCGTTCGTGGGTTTGGTGGCCGTGTTGGTGGCCTGCTGCTCCAGCGGCTTTGCTGGTGTTTATTTTGAGAAGATCCTCAAAGAGACCAAGCAGAGTGTGTGGGTCAGAAACATCCAGCTCGGTCTGTTTGGTCTGGTTTTTGGCCTGTTTGGAATGTTACTGTATGacggagagagagtgaaggagcaTGGAATGCTCCAGGGCTACAACTCCGTCACCTGGACTGTGGTTTCATTACAGGCGTTGGGAGGTCTGGTCATAGCCGCTGTTATTAAATACGCAGATAATATTCTGAAAGGTTTCGCCACGTCCCTGTCCATCATCCTGTCTACGCTCATTTCCTACTTCTGGCTGCAGGACTTTGAGCCGACGAGCATCTTCTTCCTGGGAGCCGTGTTGGTCATAGTTGCGACGTTTTTGTACGGCTACGAAAGCAAACCTGCGTCCAACCCGAGCCGAGCATGATGGGAAGCCGGGGACACCAGAGAGCTGATGGAGGTCCAGGATGGAGCTAAAGAGATGGACGGAAGCGCAAGAATGaactgaggaggaggaggaggaggaggacggaGGAGGAAGGAAGGTTGATGGAGATGTCCCTTGTTTCGAAGTGACTTGTTAATTGAGCGAGAGTGTGCACTCATCTGAGAGATCAGAGGCGGAGAGCCGTGGGGAGCCAAACAGGCCTATACCATCAGCGTACATGAAGAGGAAACCTCGGAAAATGATAAAACTAATGTTATATACGCCATAACTCAAGTACTTGAGGAAAGCACTGGAGTGCCATTcggttcagtgtgtgtgtgagatgatccAAGCAATCTGTGATGAGATGATAATataagattgtgtgtgtgcgtgtgtgtgtgtttgtgttttttttaaagccatgtCATGCATCTAACTGCAGGAATTCTTTCCCAAGTACAGCCAGGTGGATTGGCTTTTCACCCATGAACAAACCCCAGACACTGAAAATGCAATGATTATTATAATCTATTCAAACTTGAAgagaaattaatattaaataattttagtaagtatgga

Function

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148427 lncRNA upstream 123845 2875322 ~ 2912384 (+) False LOC113535041
TU148431 lncRNA upstream 159083 2845709 ~ 2877146 (+) False LOC113535041
TU148429 lncRNA upstream 159083 2848899 ~ 2877146 (+) False LOC113535041
TU148442 lncRNA upstream 180454 2854757 ~ 2855775 (+) True G125593
TU148365 lncRNA upstream 293945 2741998 ~ 2742284 (+) True G125525
TU148573 lncRNA downstream 281357 3336421 ~ 3338476 (+) False znf692
TU148612 lncRNA downstream 389951 3445015 ~ 3458860 (+) False acsbg2
TU148610 lncRNA downstream 400253 3455317 ~ 3477053 (+) False acsbg2
TU148607 lncRNA downstream 421257 3476321 ~ 3491140 (+) False acsbg2
TU148609 lncRNA downstream 421257 3476321 ~ 3537289 (+) False acsbg2
XM_034306697.1 mRNA upstream 4504 2951421 ~ 3031725 (+) True notch2
XM_026928605.2 mRNA upstream 109897 2920866 ~ 2926332 (+) True sec22bb
XM_026928606.2 mRNA upstream 109897 2920867 ~ 2926332 (+) False sec22bb
XM_034306258.1 mRNA upstream 117998 2911721 ~ 2918231 (+) False LOC113535041
XM_026928409.2 mRNA downstream 22056 3077120 ~ 3087181 (+) True foxe3
XM_026927866.2 mRNA downstream 34517 3089581 ~ 3098224 (+) True foxd2
XM_034306266.1 mRNA downstream 34517 3089581 ~ 3098224 (+) False foxd2
XM_026927946.2 mRNA downstream 281316 3336380 ~ 3347747 (+) True znf692
XM_026927947.2 mRNA downstream 281316 3336380 ~ 3347747 (+) False znf692
XR_003403572.2 other upstream 804089 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 1104811 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 1229439 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 1689644 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 1929942 1103735 ~ 1106287 (+) False lonrf1l
XR_004578620.1 other downstream 1040205 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1165620 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 1688175 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 3701699 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 3701699 6756763 ~ 6796076 (+) False phf19

Expression Profile