RNA id: XM_026928273.2


Basic Information

Item Value
RNA id XM_026928273.2
length 2345
RNA type mRNA
GC content 0.56
exon number 9
gene id otud5a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 5057674 ~ 5101511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTCTAATTTGACAGCgcatactatttagtacgcAAGTATTAAATTGTGGACGTTGCCTAGGAcactaagaagaagaaaaacggCTGCAAAAAGGAAGTGACGTGTACATGCCGTCACTCGTGTGTTGATGTTTTGTGGAAAGTGGAGAACGGACGGCGGACGGGAAGCGGtggctttgtttttgtttccaaCAGCGTCGCCTTTTAACGTTAAAAAGCCATTCAGCTTTTCAGTAAAACGTTCAAGGACGCGCACGCGGACAAAGAAGACGGTCACGTTGACTCTCGATCGAACGCAAAACGTTTAAACGGAGGACTCTTCCCCCTCCCCTTCCCCCCGACCCCAATCTGCTTTAAAtagacagctagctagccaacATGACGATTCTGCCCAAGAAGAAGCCGAGCTCGTCCGTTGGCGTTTCCGATCACACCGACGAACCCGACCGACGGAGCGGATCCGACCCGCACCCACATCCGCATCCACACCCGCATTCCCACGCCGTGCGGACGGGCGCCAGGCCCAGAGCTTCTCCGCCGCCGTGGTCGTATCAGACCGCTCCGCCTTCGTCCAGGGAGGACAGGCGGAATGAGCCGAGCTCCCGGCCGCAGCAGGCCTCGCCTCCGCCGGTAGGTTCGGGTTCCCCGGCCGGGCCGGGAGACGGAAGCGGGATCTCCGGGGTTCGCGGAGAGCTCGCGGGCGGTGTAGGATGCGGCGGTGCTGGTGGAATCGGGATTGGGAGTTGCTGCTCCGGCCCGGGGCTCAGCAAGAGGCGGCGTCAGGCGACTTGCACCGGCGGAGTAGCGGGCGGAGGGACCGGACCCGGCGTGTCTGGAGGCGGTGGAGTCGGTCCGAGCTCGGATCCCGAGGAAGGCGCCGGTTATAACAGCGAGGATGAGTATGAGAATGCTTCCAGACTGCAGTCGGAGGATCCGGCGACGGTTGAACAGcaGGAGCACTGGTTCGAGAAAGCACTTAGAGAAAAGAAAGgatttgtgattaaaaaaatgaaggaagacGGTGCGTGCCTCTTCAGAGCTGTCGCTGATCAAGTTTACGGAGACCAAGATATGCACGAAGTCGTTCGCAAACACTGCATGGACTACTTGATGAAGAACGCAGACTACTTCTCAAACTACGTgacagaagacttcaccacaTACAtcaacaggaaaagaaaaaacaactgtCACGGGAACCACATTGAGATGCAGGCCATGGCGGAGATGTACAACCGGCCGGTGGAGGTGTACCAGAACGGCACAGAACCAATCAACACGTTCCACGGGATCCACCAAAACAATGACGAACCAATCAGAGTCAGTTACCATCGGAACATTCACTACAATTCAGTGGTGAACCCTAATAAAGCCACGATCGGAGTGGGGCTCGGCCTTCCTGCCTTTAAACCGGGATACGCGGACCAGTCTCTGATGAAGAACGCTATCAAGACATCGGAGGAGTCGTGGATCGAGCAGCAGATGCTGGAGGATAAAAAGAGGGCCACTGATTGGGAGGCTACCAATGAGGCAATCGAGGAGCAGGTGGCCCGCGAGTCGTACCTGCAGTGGCTCCGGGATCAGGAGAAACAGGCACGGCAGCCGCGTAAGGCCAGCGCCACATGTAGCTCTGCCACTGCTGCAGCCTCCAGCGGACTGGAGGAGTGGAGCGCACGGTCCCCACGGCACCGGAGCTCCGCCCCCTCCCCCGAGAACCCAGACCCGGCCCACTCGGACCCAGCGCCCAAGCCTCCCTCCCCGGCTGGAGCGGCTCTCGCGCTGTCCAAACCTCCCTCGCCTTGCGCTCCTGGGCCCAGTAACCAAGCCTGTGTTGGAGCAGACAGACCCACCTCATCGTCTCTGGTGTCTCTGTACCCCGCGCTGGGCTACCGTGCCATCATGCAGGACATGTCGCCAACGGCTTTTGgTCTGACAGATTGGGAGGATGACGAGATTTTGGCCTCGGTCCTGGCCGTATCACAACAGGAGTACCTCGACAGCATGAAGAAGAACGCCATGCATAGGGAACCGTCTCCAGACAGCAGTTGATAAAGGGACGAAGGCGCTCCGAAGCCCTCTCGCAGTACAGGAGAAGGCACAAACCCGGGGATCAATCAAACGTCATCTTGTCCATCATCATAGAAATCCCATTTCCCTCTCACTCTCCCCTCATGTCCTGATCACTATCATCTATCAGTAATAATGACCGTCACTGTAAGACTTCCCCTCACCATTACCTTACTTTCTTTTGCCACTAATGCCAAGATTGGACTTCTTTATTAGGTGCATGTTTAAACCAACATAACTGAtctcatagaaaaaaaacatgaggaaaaaaaaaaa

Function

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150340 lncRNA upstream 1848 5055633 ~ 5055834 (+) True G127198
XR_004578588.1 lncRNA upstream 3855 5051231 ~ 5053827 (+) True LOC117597829
TU150287 lncRNA upstream 118296 4885020 ~ 4939386 (+) True G127155
TU150279 lncRNA upstream 215548 4841426 ~ 4842134 (+) True G127147
TU150236 lncRNA upstream 262426 4772794 ~ 4795256 (+) True G127105
TU150355 lncRNA downstream 96415 5197926 ~ 5202226 (+) True G127210
TU150450 lncRNA downstream 476266 5577777 ~ 5594115 (+) True G127293
TU150944 lncRNA downstream 805734 5907245 ~ 5907946 (+) False tbc1d22b
TU151322 lncRNA downstream 1523176 6624687 ~ 6625322 (+) True G128072
XR_004578522.1 lncRNA downstream 1558353 6659864 ~ 6687416 (+) True LOC117597772
XM_026928179.2 mRNA upstream 6474 5022384 ~ 5051208 (+) False si:ch211-180f4.1
XM_026928014.2 mRNA downstream 1429 5102940 ~ 5107022 (+) True pim2
XM_026928012.2 mRNA downstream 9007 5110518 ~ 5130870 (+) True slc35a2
XM_034306454.1 mRNA downstream 30923 5132434 ~ 5159096 (+) False bcap31
XM_026928516.2 mRNA downstream 30926 5132437 ~ 5159096 (+) False bcap31
XM_026928517.2 mRNA downstream 30928 5132439 ~ 5159096 (+) True bcap31
XR_004578621.1 other upstream 294691 4743239 ~ 4762991 (+) False srpk3
TU149628 other upstream 779605 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 955993 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2825542 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 3126264 1877041 ~ 1931418 (+) False LOC113535242
XR_004578572.1 other downstream 1655252 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 1655252 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2322512 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2322512 7424023 ~ 7430997 (+) True mrps36
TU152202 other downstream 2866724 7968235 ~ 7971749 (+) True LOC113526371

Expression Profile