RNA id: XM_026928275.2


Basic Information

Item Value
RNA id XM_026928275.2
length 3293
RNA type mRNA
GC content 0.49
exon number 9
gene id si:ch73-233m11.2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4095269 ~ 4104819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCACAGCCCAAGAAGTTTACTTCCTGTTGTCTCCAGAAGCAGTGAGGTGTGTATTCACTGCAGAAGAGTTTGGACTTCAGTTTGTTTCATCCAGAGGAACATCTGacataagaaacaaaatcaGGAAGCAGAAATCTATGAGATTATGGAGGCGAGTTTGGATTATCTCCCTGATGTGCAGAAGTTGCACAAGGAGGTCATGAGGAATGGTGTGACGAAGTCCACCCAGGTCAGCTCCCTTTTAGGTGGCCAGTCAATCAAAGATGTGATTTTAAACAAATGCTACATTCCCCTTTCAGTCAGCATAGACAATAGAGGCTGTCTGACGAACAATGTCAAAAAGTTGGAAAGTGTGATTTCACAGGAGTTTGGAGCAGGCACTGAGGGTGGGAAGTTGCTCCTGTGTGGAGGACCCGGGATGGGCAAGACCACAGCGGTGGAACAGCTCATTTGGGACTGGGCCTCTGGAAGCCATCTTCAGTGCTACACGTTTATCCTGCGATTGTGTTCGAGTGTGCTGCGTGGATCTGAACAGAGTCTGCATAGCACGCTTCtcagcacacacatgcatatctCTGATGAGCATCTTGAGATGATCTTGAAGACGCCTCACACAATACTTTTAGTGTTGGACGACGTCCAGAACCTTCTATCTAATTCTCCTGAATCCGGTAAGCTGGTGTGTGACCCACGTCAGCCAGCAGGGGGTACCGTGTTGGTGCGCAGTTTACTAGAGGGGTCTTTGCTGCCCGGTGTGTCGTTACTGCTCACCTCCAGAGAAGCTGTCAAGCTGGAATCTGTGCGTTTTGCTCACCTGATGGGTTTCTCCAGCTCCCAAAGGAAAGCATTCTTCCAACGCTTCTTTGACAACAAGGAAAAAGGAGAGCAGATTCTCCATCACTGCGAACAAGCTGTGGGCGTGGAGGAGATTTGTGCTTGTCCTGGATTTTGCTGgacactgtgctgtgtgtgcaaaGAGCGACTGGAGCATCAAAATTGTGTTCCGGAGACACTGAGCGAGCTCCACTGCatgatcacacactctctactgCAGGAGCATAAGGTGAGCGTGGAGACAGCAAAGGAGCTGATTTACGGTTTGGGGAAACTCGCAGAACAGTGCACATCTGTCACCTGCACACACTCTGACATCATCAAATGTGACCTTCAACCCTTCCTGGGCTCCCAGATCCTGTCTGCTATCCTGCGCCTCAACGCTGATGATGCCACTTCCCCTGATGCTACGTTCTCCTTCCCGTCTCCGACATTCAAAGACTTCTTAAGGGCGGCCTCCTTTTACCTTGACCATGATGATGGCAAGATCCTAGAAAGTCCCCTGGAAATCCACAACTaccatttttttcttgctgGGCTTTCAGACCCTATGCAGAGGAAGCTTCTGGAAGCCTCCACAGGCCGCTTCGGCAGCGGCCGTCTCTCCGAGTTCCACCGCTGGCTCATGAGTACGGTTGCAGAAGTGCTACCAGGCATAGACAAGATAAATCACTGGCATGTTTTGCGTATCCTCTACCACACACTCAGCCCCACACTGGTCAGGGAGAGCGTGCGCTCGTGCGAGTGGAGGATGCGCAGCTATGATGGCATGCAGGAAGCAGACTGTGCAGCGCTGGCGTTTGTGGTGCGATGTTTAGGAGAACTGCAGTACCTGAACCTGTACAGGAGCTCCCTGACAGAGGAGCAGGCAGAGAAGCTCATGACTGTCTTCCGCTTGGCCAAAACCATCGACTTGACTCAAAGTACAGTGAGTGTGGGTGTGATCAGACATTTTGCTCGGGCGCTGAAAGACGGACGAGCCACCGATGTCAACCTGACCCACTGCAAACTGGGAGACGAAGCAATAAAGATCCTGTGTTCCTCCATCCCACACTCCAGCCTGCATACACTCAAccTGTGGGACTGCCGCCTGACACCGGCGTGTAGTGAAGCGCTCGCTGAGATGTTGTCCACTTctaagctgtgtgtgttgaacCTGGGAGCTAACGAGATAAACGATGAAGGACTCAATCGACTCATCGGTGCACTCGGGACGTCCACGTGCACGCTGCAGGATctttgTTTGGATCTCTGTCCTTTGACTGGATCATGCTTGGCTGCACTGTCGTCTGCCCTGACATCTTCTCTCTCTGAGCTGAGGAAACTGGTCCTGAGTAGGAACAGCCTGGATGATGACACTCTGGAACATCTCTCACAAGCGCTACAAAGTGGCCGCTGCAAACTCAAGAAtctgagTTTATATTCTTGTGAGCTGACCGGTTCCTGCTGCCCGTCCCTAGCAGCCGCACTTCAGTCAGAACACTGCTCTCTGACCAAGCTGGACCTATCCGTGAACCCGCTCGACGAATCAAACACGCTCCTCATCTGTGATGCCCTGAAATCCCCCAATTGTTCACTGGAGAagttaggtatgaATGCGTGTGAGCTGACGGAGCCGGTGTTCAGCGCACTGGgcagtgtgttgatgtgtggAGCGTCCAGGCTGAAGAAACTTCTCATCGGAATAAACAGAGTAGGGGACGCTGCAGTCAAACACATCTGGAAGGCCCTGAAACACCCTCACTGCCAGCTGCAACATCTCGATCTTGAGATGGTGGCTCTGACGGATGCCAGTGTCAACGAGCTGTGTGAAGCCGTCATGGCTTGTGGCTCCTTAACGAGCCTGATTCTGAAGAACAACAACctcactgacatttctgttccCCGATTGGTCAAGCTCGTTCAAGACCGTCCAGGCTTGGAACTGAAtgtGCAGTATAATGACTTCAGCGAGGATGTATTTGAGCTGATGGACGCCTACGAAACAATACAATATTAACACAACATGTGCTTTCACGCAGCAAGAAGAAGCTTATAGACTGAAAAGTGGTTGAATATACGTGTGTTATTAATGCCTCATTTACTGGGAATTCAGTACTAATGCACTCTGTGTGGTTTAATGTGTCCACTAAACCAGAGGCAGGTTTACTGATTTTGGCATAAAAATGGGTAAGGGCTGTCTGTATGATACGAAACATAAGTGTATTTAAAAACTAAGCACAGTATTCTCAGTGTATTACATTGCGTTATACACCATTACATTTGATCATATAATAGTTGCTTGCTAAGAACCGAAGTGAATTTGTTTATTAGCGGgctataatgtgtgttttttttttttttttttttattagagacCCTATGCTGTCTACACTCATGCGAAAGTTCCCTAAAGTTCTTATTTGTATTAGCATTACTTTGTCTTTCTGTGTTTTACAAAATAAGTATGAACTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149545 lncRNA upstream 34207 4060279 ~ 4061066 (+) True G126525
TU149465 lncRNA upstream 121989 3970379 ~ 3973284 (+) True G126454
TU149510 lncRNA upstream 131177 3907079 ~ 3964096 (+) True G126493
TU149472 lncRNA upstream 251536 3802544 ~ 3843737 (+) True G126461
TU149462 lncRNA upstream 256638 3833678 ~ 3838635 (+) True G126453
TU149580 lncRNA downstream 6755 4111574 ~ 4185080 (+) True G126549
TU149636 lncRNA downstream 148925 4253744 ~ 4254762 (+) True G126591
TU149676 lncRNA downstream 213391 4318210 ~ 4358056 (+) True G126628
XR_003403565.2 lncRNA downstream 381452 4486271 ~ 4494004 (+) True LOC113535080
TU150205 lncRNA downstream 521314 4626133 ~ 4672874 (+) False plxnb3
XM_034306950.1 mRNA upstream 274182 3818404 ~ 3821091 (+) True smim24
XM_026928561.2 mRNA upstream 287789 3802656 ~ 3807484 (+) False dohh
XM_026928560.2 mRNA upstream 287789 3802671 ~ 3807484 (+) False dohh
XM_034306948.1 mRNA upstream 287789 3802726 ~ 3807484 (+) True dohh
XM_034306949.1 mRNA upstream 287789 3802827 ~ 3807484 (+) False dohh
XM_026928566.2 mRNA downstream 14216 4119035 ~ 4131370 (+) True abtb1
XM_026928207.2 mRNA downstream 48218 4153037 ~ 4177850 (+) False slc6a6a
XM_026928206.2 mRNA downstream 48219 4153038 ~ 4177850 (+) True slc6a6a
XM_026928208.2 mRNA downstream 48221 4153040 ~ 4177850 (+) False slc6a6a
XM_034306914.1 mRNA downstream 115831 4220650 ~ 4232485 (+) True ssuh2rs1
XR_003403572.2 other upstream 1863133 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2163855 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2288483 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2748688 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 2988986 1103735 ~ 1106287 (+) False lonrf1l
TU149628 other downstream 115865 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 638420 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2651944 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2651944 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 3319204 7424023 ~ 7427557 (+) False mrps36

Expression Profile